dmlc--dgl
0227ddfb66
* WIP: TypedLinear and new RelGraphConv * wip * further simplify RGCN * a bunch of tweak for performance; add basic cpu support * update on segmm * wip: segment.cu * new backward kernel works * fix a bunch of bugs in kernel; leave idx_a for future * add nn test for typed_linear * rgcn nn test * bugfix in corner case; update RGCN README * doc * fix cpp lint * fix lint * fix ut * wip: hgtconv; presorted flag for rgcn * hgt code and ut; WIP: some fix on reorder graph * better typed linear init * fix ut * fix lint; add docstring
184 行
6.9 KiB
Python
184 行
6.9 KiB
Python
"""Various commonly used linear modules"""
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# pylint: disable= no-member, arguments-differ, invalid-name, W0235
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import math
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import torch
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import torch.nn as nn
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from ...ops import segment_mm, gather_mm
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__all__ = ['TypedLinear']
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class TypedLinear(nn.Module):
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r"""Linear transformation according to types.
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For each sample of the input batch :math:`x \in X`, apply linear transformation
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:math:`xW_t`, where :math:`t` is the type of :math:`x`.
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The module supports two regularization methods (basis-decomposition and
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block-diagonal-decomposition) proposed by "`Modeling Relational Data
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with Graph Convolutional Networks <https://arxiv.org/abs/1703.06103>`__"
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The basis regularization decomposes :math:`W_t` by:
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.. math::
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W_t^{(l)} = \sum_{b=1}^B a_{tb}^{(l)}V_b^{(l)}
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where :math:`B` is the number of bases, :math:`V_b^{(l)}` are linearly combined
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with coefficients :math:`a_{tb}^{(l)}`.
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The block-diagonal-decomposition regularization decomposes :math:`W_t` into :math:`B`
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block-diagonal matrices. We refer to :math:`B` as the number of bases:
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.. math::
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W_t^{(l)} = \oplus_{b=1}^B Q_{tb}^{(l)}
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where :math:`B` is the number of bases, :math:`Q_{tb}^{(l)}` are block
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bases with shape :math:`R^{(d^{(l+1)}/B)\times(d^{l}/B)}`.
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Parameters
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----------
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in_size : int
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Input feature size.
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out_size : int
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Output feature size.
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num_types : int
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Total number of types.
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regularizer : str, optional
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Which weight regularizer to use "basis" or "bdd":
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- "basis" is short for basis-decomposition.
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- "bdd" is short for block-diagonal-decomposition.
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Default applies no regularization.
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num_bases : int, optional
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Number of bases. Needed when ``regularizer`` is specified. Typically smaller
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than ``num_types``.
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Default: ``None``.
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Examples
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--------
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No regularization.
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>>> from dgl.nn import TypedLinear
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>>> import torch
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>>>
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>>> x = torch.randn(100, 32)
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>>> x_type = torch.randint(0, 5, (100,))
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>>> m = TypedLinear(32, 64, 5)
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>>> y = m(x, x_type)
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>>> print(y.shape)
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torch.Size([100, 64])
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With basis regularization
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>>> x = torch.randn(100, 32)
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>>> x_type = torch.randint(0, 5, (100,))
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>>> m = TypedLinear(32, 64, 5, regularizer='basis', num_bases=4)
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>>> y = m(x, x_type)
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>>> print(y.shape)
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torch.Size([100, 64])
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"""
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def __init__(self, in_size, out_size, num_types,
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regularizer=None, num_bases=None):
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super().__init__()
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self.in_size = in_size
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self.out_size = out_size
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self.num_types = num_types
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if regularizer is None:
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self.W = nn.Parameter(torch.Tensor(num_types, in_size, out_size))
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elif regularizer == 'basis':
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if num_bases is None:
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raise ValueError('Missing "num_bases" for basis regularization.')
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self.W = nn.Parameter(torch.Tensor(num_bases, in_size, out_size))
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self.coeff = nn.Parameter(torch.Tensor(num_types, num_bases))
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self.num_bases = num_bases
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elif regularizer == 'bdd':
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if num_bases is None:
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raise ValueError('Missing "num_bases" for bdd regularization.')
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if in_size % num_bases != 0 or out_size % num_bases != 0:
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raise ValueError(
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'Input and output sizes must be divisible by num_bases.'
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)
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self.submat_in = in_size // num_bases
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self.submat_out = out_size // num_bases
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self.W = nn.Parameter(torch.Tensor(
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num_types, num_bases * self.submat_in * self.submat_out))
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self.num_bases = num_bases
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else:
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raise ValueError(
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f'Supported regularizer options: "basis", "bdd", but got {regularizer}')
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self.regularizer = regularizer
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self.reset_parameters()
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def reset_parameters(self):
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"""Reset parameters"""
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with torch.no_grad():
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# Follow torch.nn.Linear 's initialization to use kaiming_uniform_ on in_size
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if self.regularizer is None:
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nn.init.uniform_(self.W, -1/math.sqrt(self.in_size), 1/math.sqrt(self.in_size))
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elif self.regularizer == 'basis':
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nn.init.uniform_(self.W, -1/math.sqrt(self.in_size), 1/math.sqrt(self.in_size))
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nn.init.xavier_uniform_(self.coeff, gain=nn.init.calculate_gain('relu'))
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elif self.regularizer == 'bdd':
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nn.init.uniform_(self.W, -1/math.sqrt(self.submat_in), 1/math.sqrt(self.submat_in))
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else:
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raise ValueError(
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f'Supported regularizer options: "basis", "bdd", but got {regularizer}')
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def get_weight(self):
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"""Get type-wise weight"""
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if self.regularizer is None:
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return self.W
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elif self.regularizer == 'basis':
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W = self.W.view(self.num_bases, self.in_size * self.out_size)
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return (self.coeff @ W).view(self.num_types, self.in_size, self.out_size)
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elif self.regularizer == 'bdd':
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return self.W
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else:
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raise ValueError(
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f'Supported regularizer options: "basis", "bdd", but got {regularizer}')
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def forward(self, x, x_type, sorted_by_type=False):
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"""Forward computation.
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Parameters
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----------
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x : torch.Tensor
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A 2D input tensor. Shape: (N, D1)
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x_type : torch.Tensor
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A 1D integer tensor storing the type of the elements in ``x`` with one-to-one
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correspondenc. Shape: (N,)
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sorted_by_type : bool, optional
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Whether the inputs have been sorted by the types. Forward on pre-sorted inputs may
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be faster.
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Returns
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-------
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y : torch.Tensor
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The transformed output tensor. Shape: (N, D2)
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"""
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w = self.get_weight()
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if self.regularizer == 'bdd':
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w = w.index_select(0, x_type).view(-1, self.submat_in, self.submat_out)
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x = x.view(-1, 1, self.submat_in)
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return torch.bmm(x, w).view(-1, self.out_size)
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elif sorted_by_type:
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pos_l = torch.searchsorted(x_type, torch.arange(self.num_types, device=x.device))
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pos_r = torch.cat([pos_l[1:], torch.tensor([len(x_type)], device=x.device)])
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seglen = (pos_r - pos_l).cpu() # XXX(minjie): cause device synchronize
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return segment_mm(x, w, seglen_a=seglen)
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else:
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return gather_mm(x, w, idx_b=x_type)
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def __repr__(self):
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if self.regularizer is None:
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return (f'TypedLinear(in_size={self.in_size}, out_size={self.out_size}, '
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f'num_types={self.num_types})')
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else:
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return (f'TypedLinear(in_size={self.in_size}, out_size={self.out_size}, '
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f'num_types={self.num_types}, regularizer={self.regularizer}, '
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f'num_bases={self.num_bases})')
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