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Minjie Wang 0227ddfb66 [NN] Rework RelGraphConv and HGTConv (#3742)
* WIP: TypedLinear and new RelGraphConv

* wip

* further simplify RGCN

* a bunch of tweak for performance; add basic cpu support

* update on segmm

* wip: segment.cu

* new backward kernel works

* fix a bunch of bugs in kernel; leave idx_a for future

* add nn test for typed_linear

* rgcn nn test

* bugfix in corner case; update RGCN README

* doc

* fix cpp lint

* fix lint

* fix ut

* wip: hgtconv; presorted flag for rgcn

* hgt code and ut; WIP: some fix on reorder graph

* better typed linear init

* fix ut

* fix lint; add docstring
2022-02-23 12:10:20 +08:00

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# Relational-GCN
* Paper: [Modeling Relational Data with Graph Convolutional Networks](https://arxiv.org/abs/1703.06103)
* Author's code for entity classification: [https://github.com/tkipf/relational-gcn](https://github.com/tkipf/relational-gcn)
* Author's code for link prediction: [https://github.com/MichSchli/RelationPrediction](https://github.com/MichSchli/RelationPrediction)
### Dependencies
* PyTorch 1.10
* rdflib
* pandas
* tqdm
* TorchMetrics
```
pip install rdflib pandas
```
Example code was tested with rdflib 4.2.2 and pandas 0.23.4
### Entity Classification
For AIFB, MUTAG, BGS and AM,
```
python entity.py -d aifb --wd 0 --gpu 0
python entity.py -d mutag --n-bases 30 --gpu 0
python entity.py -d bgs --n-bases 40 --gpu 0
python entity.py -d am --n-bases 40 --n-hidden 10 --gpu 0
```
### Entity Classification with minibatch
For AIFB, MUTAG, BGS and AM,
```
python entity_sample.py -d aifb --wd 0 --gpu 0 --fanout='20,20' --batch-size 128
python entity_sample.py -d mutag --n-bases 30 --gpu 0 --batch-size 64 --fanout='-1,-1' --use-self-loop --n-epochs 20 --dropout 0.5
python entity_sample.py -d bgs --n-bases 40 --gpu 0 --fanout='-1,-1' --n-epochs=16 --batch-size=16 --dropout 0.3
python entity_sample.py -d am --n-bases 40 --gpu 0 --fanout='35,35' --batch-size 64 --n-hidden 16 --use-self-loop --n-epochs=20 --dropout 0.7
```
### Entity Classification on multiple GPUs
To use multiple GPUs, replace `entity_sample.py` with `entity_sample_multi_gpu.py` and specify
multiple GPU IDs separated by comma, e.g., `--gpu 0,1`.
### Link Prediction
FB15k-237 in RAW-MRR
```
python link.py --gpu 0 --eval-protocol raw
```
FB15k-237 in Filtered-MRR
```
python link.py --gpu 0 --eval-protocol filtered
```