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Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00

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4.4 KiB
Python

"""MXNet Module for NNConv layer"""
# pylint: disable= no-member, arguments-differ, invalid-name
import mxnet as mx
from mxnet.gluon import nn
from mxnet.gluon.contrib.nn import Identity
from .... import function as fn
from ....utils import expand_as_pair
class NNConv(nn.Block):
r"""Graph Convolution layer introduced in `Neural Message Passing
for Quantum Chemistry <https://arxiv.org/pdf/1704.01212.pdf>`__.
.. math::
h_{i}^{l+1} = h_{i}^{l} + \mathrm{aggregate}\left(\left\{
f_\Theta (e_{ij}) \cdot h_j^{l}, j\in \mathcal{N}(i) \right\}\right)
Parameters
----------
in_feats : int or pair of ints
Input feature size.
If the layer is to be applied on a unidirectional bipartite graph, ``in_feats``
specifies the input feature size on both the source and destination nodes. If
a scalar is given, the source and destination node feature size would take the
same value.
out_feats : int
Output feature size.
edge_func : callable activation function/layer
Maps each edge feature to a vector of shape
``(in_feats * out_feats)`` as weight to compute
messages.
Also is the :math:`f_\Theta` in the formula.
aggregator_type : str
Aggregator type to use (``sum``, ``mean`` or ``max``).
residual : bool, optional
If True, use residual connection. Default: ``False``.
bias : bool, optional
If True, adds a learnable bias to the output. Default: ``True``.
"""
def __init__(self,
in_feats,
out_feats,
edge_func,
aggregator_type,
residual=False,
bias=True):
super(NNConv, self).__init__()
self._in_src_feats, self._in_dst_feats = expand_as_pair(in_feats)
self._out_feats = out_feats
if aggregator_type == 'sum':
self.reducer = fn.sum
elif aggregator_type == 'mean':
self.reducer = fn.mean
elif aggregator_type == 'max':
self.reducer = fn.max
else:
raise KeyError('Aggregator type {} not recognized: '.format(aggregator_type))
self._aggre_type = aggregator_type
with self.name_scope():
self.edge_nn = edge_func
if residual:
if self._in_dst_feats != out_feats:
self.res_fc = nn.Dense(
out_feats, in_units=self._in_dst_feats,
use_bias=False, weight_initializer=mx.init.Xavier())
else:
self.res_fc = Identity()
else:
self.res_fc = None
if bias:
self.bias = self.params.get('bias',
shape=(out_feats,),
init=mx.init.Zero())
else:
self.bias = None
def forward(self, graph, feat, efeat):
r"""Compute MPNN Graph Convolution layer.
Parameters
----------
graph : DGLGraph
The graph.
feat : mxnet.NDArray or pair of mxnet.NDArray
The input feature of shape :math:`(N, D_{in})` where :math:`N`
is the number of nodes of the graph and :math:`D_{in}` is the
input feature size.
efeat : mxnet.NDArray
The edge feature of shape :math:`(N, *)`, should fit the input
shape requirement of ``edge_nn``.
Returns
-------
mxnet.NDArray
The output feature of shape :math:`(N, D_{out})` where :math:`D_{out}`
is the output feature size.
"""
with graph.local_scope():
feat_src, feat_dst = expand_as_pair(feat)
# (n, d_in, 1)
graph.srcdata['h'] = feat_src.expand_dims(-1)
# (n, d_in, d_out)
graph.edata['w'] = self.edge_nn(efeat).reshape(-1, self._in_src_feats, self._out_feats)
# (n, d_in, d_out)
graph.update_all(fn.u_mul_e('h', 'w', 'm'), self.reducer('m', 'neigh'))
rst = graph.dstdata.pop('neigh').sum(axis=1) # (n, d_out)
# residual connection
if self.res_fc is not None:
rst = rst + self.res_fc(feat_dst)
# bias
if self.bias is not None:
rst = rst + self.bias.data(feat_dst.context)
return rst