dmlc--dgl
8651be54c2
* refactor. * accelerate update_all in nodeflow. * fix. * refactor. * fix lint. * fix lint. * reorganize. * reorg. * remove. * add doc. * impl block_incidence_matrix * fix lint. * fix. * simple fix. * fix test. * fix interface. * fix eid. * fix comments.
839 行
29 KiB
Python
839 行
29 KiB
Python
"""For different schedulers"""
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from __future__ import absolute_import
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from .. import utils
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from .._ffi.function import _init_api
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from ..base import DGLError
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from .. import backend as F
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from ..frame import frame_like, FrameRef
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from ..function.base import BuiltinFunction, BundledFunction
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from ..udf import EdgeBatch, NodeBatch
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from . import ir
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from .ir import var
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from . import degree_bucketing as db
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from . import spmv
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__all__ = [
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"schedule_send",
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"schedule_recv",
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"schedule_update_all",
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"schedule_snr",
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"schedule_apply_nodes",
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"schedule_apply_edges",
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"schedule_group_apply_edge",
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"schedule_push",
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"schedule_pull"
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]
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def schedule_send(graph, u, v, eid, message_func):
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"""get send schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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u : utils.Index
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Source nodes
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v : utils.Index
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Destination nodes
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eid : utils.Index
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Ids of sending edges
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message_func: callable or list of callable
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The message function
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"""
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# TODO(minjie): support builtin message func
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message_func = _standardize_func_usage(message_func, 'message')
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# vars
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var_nf = var.FEAT_DICT(graph._node_frame)
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var_ef = var.FEAT_DICT(graph._edge_frame)
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var_mf = var.FEAT_DICT(graph._msg_frame)
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var_u = var.IDX(u)
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var_v = var.IDX(v)
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var_eid = var.IDX(eid)
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msg = _gen_send(graph, var_nf, var_nf, var_ef, var_u, var_v, var_eid, message_func)
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ir.WRITE_ROW_(var_mf, var_eid, msg)
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# set message indicator to 1
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graph._msg_index = graph._msg_index.set_items(eid, 1)
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def schedule_recv(graph,
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recv_nodes,
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reduce_func,
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apply_func,
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inplace):
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"""Schedule recv.
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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recv_nodes: utils.Index
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Nodes to recv.
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reduce_func: callable or list of callable
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The reduce function
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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"""
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src, dst, eid = graph._graph.in_edges(recv_nodes)
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if len(eid) > 0:
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nonzero_idx = graph._msg_index.get_items(eid).nonzero()
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eid = eid.get_items(nonzero_idx)
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src = src.get_items(nonzero_idx)
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dst = dst.get_items(nonzero_idx)
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if len(eid) == 0:
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# Downgrade to apply nodes if
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# 1) all recv nodes are 0-degree nodes
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# 2) no send has been called
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if apply_func is not None:
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schedule_apply_nodes(graph, recv_nodes, apply_func, inplace)
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else:
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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# sort and unique the argument
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recv_nodes, _ = F.sort_1d(F.unique(recv_nodes.tousertensor()))
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recv_nodes = utils.toindex(recv_nodes)
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var_recv_nodes = var.IDX(recv_nodes, name='recv_nodes')
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# reduce
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reduced_feat = _gen_reduce(graph, reduce_func, (src, dst, eid),
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recv_nodes)
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# apply
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final_feat = _apply_with_accum(graph, var_recv_nodes, var_nf,
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reduced_feat, apply_func)
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_nf, var_recv_nodes, final_feat)
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else:
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ir.WRITE_ROW_(var_nf, var_recv_nodes, final_feat)
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# set message indicator to 0
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graph._msg_index = graph._msg_index.set_items(eid, 0)
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if not graph._msg_index.has_nonzero():
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ir.CLEAR_FRAME_(var.FEAT_DICT(graph._msg_frame, name='mf'))
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def schedule_snr(graph,
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edge_tuples,
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message_func,
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reduce_func,
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apply_func,
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inplace):
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"""Schedule send_and_recv.
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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edge_tuple: tuple
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A tuple of (src ids, dst ids, edge ids) representing edges to perform
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send_and_recv
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message_func: callable or list of callable
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The message function
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reduce_func: callable or list of callable
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The reduce function
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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"""
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u, v, eid = edge_tuples
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recv_nodes, _ = F.sort_1d(F.unique(v.tousertensor()))
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recv_nodes = utils.toindex(recv_nodes)
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# create vars
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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var_u = var.IDX(u)
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var_v = var.IDX(v)
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var_eid = var.IDX(eid)
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var_recv_nodes = var.IDX(recv_nodes, name='recv_nodes')
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# generate send and reduce schedule
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uv_getter = lambda: (var_u, var_v)
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adj_creator = lambda: spmv.build_adj_matrix_uv((u, v), recv_nodes, graph.number_of_nodes())
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inc_creator = lambda: spmv.build_inc_matrix_dst(v, recv_nodes)
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reduced_feat = _gen_send_reduce(graph, graph._node_frame, graph._node_frame,
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graph._edge_frame, message_func, reduce_func,
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var_eid, var_recv_nodes,
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uv_getter, adj_creator, inc_creator)
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# generate apply schedule
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final_feat = _apply_with_accum(graph, var_recv_nodes, var_nf, reduced_feat, apply_func)
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_nf, var_recv_nodes, final_feat)
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else:
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ir.WRITE_ROW_(var_nf, var_recv_nodes, final_feat)
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def schedule_update_all(graph,
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message_func,
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reduce_func,
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apply_func):
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"""get send and recv schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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message_func: callable or list of callable
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The message function
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reduce_func: callable or list of callable
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The reduce function
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apply_func: callable
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The apply node function
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"""
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if graph.number_of_edges() == 0:
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# All the nodes are zero degree; downgrade to apply nodes
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if apply_func is not None:
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nodes = utils.toindex(slice(0, graph.number_of_nodes()))
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schedule_apply_nodes(graph, nodes, apply_func, inplace=False)
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else:
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# TODO is the eid here correct?
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eid = utils.toindex(slice(0, graph.number_of_edges())) # shortcut for ALL
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recv_nodes = utils.toindex(slice(0, graph.number_of_nodes())) # shortcut for ALL
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# create vars
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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var_recv_nodes = var.IDX(recv_nodes, name='recv_nodes')
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var_eid = var.IDX(eid)
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# generate send + reduce
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def uv_getter():
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src, dst, _ = graph._graph.edges()
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return var.IDX(src), var.IDX(dst)
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adj_creator = lambda: spmv.build_adj_matrix_graph(graph)
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inc_creator = lambda: spmv.build_inc_matrix_graph(graph)
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reduced_feat = _gen_send_reduce(graph, graph._node_frame, graph._node_frame,
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graph._edge_frame, message_func, reduce_func,
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var_eid, var_recv_nodes,
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uv_getter, adj_creator, inc_creator)
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# generate optional apply
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final_feat = _apply_with_accum(graph, var_recv_nodes, var_nf, reduced_feat, apply_func)
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ir.WRITE_DICT_(var_nf, final_feat)
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def schedule_apply_nodes(graph,
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v,
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apply_func,
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inplace):
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"""get apply nodes schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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v : utils.Index
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Nodes to apply
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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Returns
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-------
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A list of executors for DGL Runtime
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"""
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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var_v = var.IDX(v)
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v_nf = ir.READ_ROW(var_nf, var_v)
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def _afunc_wrapper(node_data):
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nbatch = NodeBatch(graph, v, node_data)
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return apply_func(nbatch)
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afunc = var.FUNC(_afunc_wrapper)
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applied_feat = ir.NODE_UDF(afunc, v_nf)
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_nf, var_v, applied_feat)
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else:
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ir.WRITE_ROW_(var_nf, var_v, applied_feat)
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def schedule_nodeflow_apply_nodes(graph,
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layer_id,
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v,
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apply_func,
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inplace):
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"""get apply nodes schedule in NodeFlow.
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Parameters
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----------
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graph: NodeFlow
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The NodeFlow to use
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layer_id : int
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The layer where we apply node update function.
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v : utils.Index
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Nodes to apply
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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Returns
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-------
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A list of executors for DGL Runtime
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"""
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var_nf = var.FEAT_DICT(graph._get_node_frame(layer_id), name='nf')
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var_v = var.IDX(v)
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v_nf = ir.READ_ROW(var_nf, var_v)
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def _afunc_wrapper(node_data):
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nbatch = NodeBatch(graph, v, node_data)
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return apply_func(nbatch)
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afunc = var.FUNC(_afunc_wrapper)
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applied_feat = ir.NODE_UDF(afunc, v_nf)
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# TODO we need to avoid index_copy here.
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_nf, var_v, applied_feat)
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else:
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ir.WRITE_ROW_(var_nf, var_v, applied_feat)
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def schedule_apply_edges(graph,
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u, v, eid,
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apply_func,
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inplace):
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"""get apply edges schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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u : utils.Index
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Source nodes of edges to apply
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v : utils.Index
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Destination nodes of edges to apply
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eid : utils.Index
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Ids of sending edges
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apply_func: callable
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The apply edge function
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inplace: bool
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If True, the update will be done in place
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Returns
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-------
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A list of executors for DGL Runtime
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"""
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# vars
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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var_ef = var.FEAT_DICT(graph._edge_frame, name='ef')
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var_u = var.IDX(u)
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var_v = var.IDX(v)
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var_eid = var.IDX(eid)
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# schedule apply edges
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fdsrc = ir.READ_ROW(var_nf, var_u)
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fddst = ir.READ_ROW(var_nf, var_v)
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fdedge = ir.READ_ROW(var_ef, var_eid)
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def _efunc_wrapper(src_data, edge_data, dst_data):
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ebatch = EdgeBatch(graph, (u, v, eid), src_data, edge_data, dst_data)
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return apply_func(ebatch)
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_efunc = var.FUNC(_efunc_wrapper)
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new_fdedge = ir.EDGE_UDF(_efunc, fdsrc, fdedge, fddst)
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_ef, var_eid, new_fdedge)
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else:
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ir.WRITE_ROW_(var_ef, var_eid, new_fdedge)
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def schedule_nodeflow_apply_edges(graph, block_id,
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u, v, eid,
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apply_func,
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inplace):
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"""get apply edges schedule in NodeFlow.
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Parameters
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----------
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graph: NodeFlow
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The NodeFlow to use
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block_id : int
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The block whose edges we apply edge update function.
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u : utils.Index
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Source nodes of edges to apply
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v : utils.Index
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Destination nodes of edges to apply
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eid : utils.Index
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Ids of sending edges
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apply_func: callable
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The apply edge function
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inplace: bool
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If True, the update will be done in place
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Returns
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-------
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A list of executors for DGL Runtime
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"""
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# vars
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in_var_nf = var.FEAT_DICT(graph._get_node_frame(block_id), name='in_nf')
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out_var_nf = var.FEAT_DICT(graph._get_node_frame(block_id + 1), name='out_nf')
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var_ef = var.FEAT_DICT(graph._get_edge_frame(block_id), name='ef')
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var_u = var.IDX(u)
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var_v = var.IDX(v)
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var_eid = var.IDX(eid)
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# schedule apply edges
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fdsrc = ir.READ_ROW(in_var_nf, var_u)
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fddst = ir.READ_ROW(out_var_nf, var_v)
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fdedge = ir.READ_ROW(var_ef, var_eid)
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def _efunc_wrapper(src_data, edge_data, dst_data):
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ebatch = EdgeBatch(graph, (u, v, eid), src_data, edge_data, dst_data)
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return apply_func(ebatch)
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_efunc = var.FUNC(_efunc_wrapper)
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new_fdedge = ir.EDGE_UDF(_efunc, fdsrc, fdedge, fddst)
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# TODO we need to avoid index_copy here.
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_ef, var_eid, new_fdedge)
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else:
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ir.WRITE_ROW_(var_ef, var_eid, new_fdedge)
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def schedule_push(graph,
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u,
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message_func,
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reduce_func,
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apply_func,
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inplace):
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"""get push schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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u : utils.Index
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Source nodes for push
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message_func: callable or list of callable
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The message function
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reduce_func: callable or list of callable
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The reduce function
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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"""
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u, v, eid = graph._graph.out_edges(u)
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if len(eid) == 0:
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# All the pushing nodes have no out edges. No computation is scheduled.
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return
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schedule_snr(graph, (u, v, eid),
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message_func, reduce_func, apply_func, inplace)
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def schedule_pull(graph,
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pull_nodes,
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message_func,
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reduce_func,
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apply_func,
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inplace):
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"""get pull schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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pull_nodes : utils.Index
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Destination nodes for pull
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message_func: callable or list of callable
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The message function
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reduce_func: callable or list of callable
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The reduce function
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apply_func: callable
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The apply node function
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inplace: bool
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If True, the update will be done in place
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"""
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# TODO(minjie): `in_edges` can be omitted if message and reduce func pairs
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# can be specialized to SPMV. This needs support for creating adjmat
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# directly from pull node frontier.
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u, v, eid = graph._graph.in_edges(pull_nodes)
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if len(eid) == 0:
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# All the nodes are 0deg; downgrades to apply.
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if apply_func is not None:
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schedule_apply_nodes(graph, pull_nodes, apply_func, inplace)
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else:
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pull_nodes, _ = F.sort_1d(F.unique(pull_nodes.tousertensor()))
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pull_nodes = utils.toindex(pull_nodes)
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# create vars
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
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var_pull_nodes = var.IDX(pull_nodes, name='pull_nodes')
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var_u = var.IDX(u)
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var_v = var.IDX(v)
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var_eid = var.IDX(eid)
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# generate send and reduce schedule
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uv_getter = lambda: (var_u, var_v)
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adj_creator = lambda: spmv.build_adj_matrix_uv((u, v), pull_nodes, graph.number_of_nodes())
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inc_creator = lambda: spmv.build_inc_matrix_dst(v, pull_nodes)
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reduced_feat = _gen_send_reduce(graph, graph._node_frame, graph._node_frame,
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graph._edge_frame, message_func, reduce_func,
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var_eid, var_pull_nodes,
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uv_getter, adj_creator, inc_creator)
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# generate optional apply
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final_feat = _apply_with_accum(graph, var_pull_nodes, var_nf, reduced_feat, apply_func)
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if inplace:
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ir.WRITE_ROW_INPLACE_(var_nf, var_pull_nodes, final_feat)
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else:
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ir.WRITE_ROW_(var_nf, var_pull_nodes, final_feat)
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def schedule_group_apply_edge(graph,
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u, v, eid,
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apply_func,
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group_by,
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inplace):
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"""group apply edges schedule
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Parameters
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----------
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graph: DGLGraph
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The DGLGraph to use
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u : utils.Index
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Source nodes of edges to apply
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v : utils.Index
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Destination nodes of edges to apply
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eid : utils.Index
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Ids of sending edges
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apply_func: callable
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The apply edge function
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group_by : str
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Specify how to group edges. Expected to be either 'src' or 'dst'
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inplace: bool
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If True, the update will be done in place
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Returns
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-------
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A list of executors for DGL Runtime
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"""
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# vars
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var_nf = var.FEAT_DICT(graph._node_frame, name='nf')
|
|
var_ef = var.FEAT_DICT(graph._edge_frame, name='ef')
|
|
var_out = var.FEAT_DICT(name='new_ef')
|
|
# TODO (lingfan): check if apply_func is a DGL builtin
|
|
db.gen_group_apply_edge_schedule(graph, apply_func, u, v, eid, group_by,
|
|
var_nf, var_ef, var_out)
|
|
var_eid = var.IDX(eid)
|
|
if inplace:
|
|
ir.WRITE_ROW_INPLACE_(var_ef, var_eid, var_out)
|
|
else:
|
|
ir.WRITE_ROW_(var_ef, var_eid, var_out)
|
|
|
|
|
|
def schedule_nodeflow_update_all(graph,
|
|
block_id,
|
|
message_func,
|
|
reduce_func,
|
|
apply_func):
|
|
"""get update_all schedule in a block.
|
|
|
|
Parameters
|
|
----------
|
|
graph: NodeFlow
|
|
The NodeFlow to use
|
|
block_id : int
|
|
The block where we perform computation.
|
|
message_func: callable or list of callable
|
|
The message function
|
|
reduce_func: callable or list of callable
|
|
The reduce function
|
|
apply_func: callable
|
|
The apply node function
|
|
"""
|
|
# A NodeFlow shouldn't have 0 edges.
|
|
assert graph.block_size(block_id) > 0
|
|
eid = utils.toindex(slice(0, graph.block_size(block_id))) # shortcut for ALL
|
|
dest_nodes = utils.toindex(slice(0, graph.layer_size(block_id + 1))) # shortcut for ALL
|
|
# create vars
|
|
var_nf = var.FEAT_DICT(graph._get_node_frame(block_id + 1), name='out_nf')
|
|
var_dest_nodes = var.IDX(dest_nodes, name='dest_nodes')
|
|
var_eid = var.IDX(eid)
|
|
# generate send + reduce
|
|
def uv_getter():
|
|
# TODO get all edges in the block.
|
|
src, dst, _ = graph.block_edges(block_id)
|
|
return var.IDX(utils.toindex(src)), var.IDX(utils.toindex(dst))
|
|
adj_creator = lambda: spmv.build_block_adj_matrix_graph(graph, block_id)
|
|
inc_creator = lambda: spmv.build_block_inc_matrix_graph(graph, block_id)
|
|
reduced_feat = _gen_send_reduce(graph, graph._get_node_frame(block_id),
|
|
graph._get_node_frame(block_id + 1),
|
|
graph._get_edge_frame(block_id),
|
|
message_func, reduce_func,
|
|
var_eid, var_dest_nodes,
|
|
uv_getter, adj_creator, inc_creator)
|
|
# generate optional apply
|
|
final_feat = _apply_with_accum(graph, var_dest_nodes, var_nf, reduced_feat, apply_func)
|
|
ir.WRITE_DICT_(var_nf, final_feat)
|
|
|
|
|
|
def schedule_nodeflow_compute(graph,
|
|
block_id,
|
|
u, v, eid,
|
|
dest_nodes,
|
|
message_func,
|
|
reduce_func,
|
|
apply_func,
|
|
inplace):
|
|
"""get flow compute schedule in NodeFlow
|
|
|
|
Parameters
|
|
----------
|
|
graph: NodeFlow
|
|
The NodeFlow to use
|
|
block_id : int
|
|
The block where we perform computation.
|
|
u : utils.Index
|
|
Source nodes of edges to apply
|
|
v : utils.Index
|
|
Destination nodes of edges to apply
|
|
eid : utils.Index
|
|
Ids of sending edges
|
|
message_func: callable or list of callable
|
|
The message function
|
|
reduce_func: callable or list of callable
|
|
The reduce function
|
|
apply_func: callable
|
|
The apply node function
|
|
inplace: bool
|
|
If True, the update will be done in place
|
|
"""
|
|
# TODO(minjie): `in_edges` can be omitted if message and reduce func pairs
|
|
# can be specialized to SPMV. This needs support for creating adjmat
|
|
# directly from pull node frontier.
|
|
if len(eid) == 0:
|
|
# All the nodes are 0deg; downgrades to apply.
|
|
if apply_func is not None:
|
|
schedule_nodeflow_apply_nodes(graph, block_id + 1, dest_nodes, apply_func, inplace)
|
|
else:
|
|
# create vars
|
|
var_nf = var.FEAT_DICT(graph._get_node_frame(block_id + 1), name='out_nf')
|
|
var_dest_nodes = var.IDX(dest_nodes, name='dest_nodes')
|
|
var_u = var.IDX(u)
|
|
var_v = var.IDX(v)
|
|
var_eid = var.IDX(eid)
|
|
# generate send and reduce schedule
|
|
uv_getter = lambda: (var_u, var_v)
|
|
adj_creator = lambda: spmv.build_adj_matrix_uv((u, v), dest_nodes,
|
|
graph.layer_size(block_id))
|
|
inc_creator = lambda: spmv.build_inc_matrix_dst(v, dest_nodes)
|
|
reduced_feat = _gen_send_reduce(graph, graph._get_node_frame(block_id),
|
|
graph._get_node_frame(block_id + 1),
|
|
graph._get_edge_frame(block_id),
|
|
message_func, reduce_func,
|
|
var_eid, var_dest_nodes,
|
|
uv_getter, adj_creator, inc_creator)
|
|
# generate optional apply
|
|
final_feat = _apply_with_accum(graph, var_dest_nodes, var_nf, reduced_feat, apply_func)
|
|
if inplace:
|
|
ir.WRITE_ROW_INPLACE_(var_nf, var_dest_nodes, final_feat)
|
|
else:
|
|
ir.WRITE_ROW_(var_nf, var_dest_nodes, final_feat)
|
|
|
|
def _check_builtin_func_list(func_list):
|
|
"""Check whether func_list only contains builtin functions."""
|
|
for fn in func_list:
|
|
if not isinstance(fn, BuiltinFunction):
|
|
raise DGLError("If specify multiple message/reduce functions, \
|
|
all of them must be builtin")
|
|
|
|
def _standardize_func_usage(func, func_name):
|
|
"""Standardize usages of message and reduce functions
|
|
Message or reduce funtion can be:
|
|
1. a UDF
|
|
2. a dgl builtin function
|
|
3. a list of dgl builtin function
|
|
|
|
This function checks if func meets the requirement, and merges last two cases
|
|
by putting builtin function in case 2 into a list
|
|
|
|
Returns:
|
|
One single UDF function or a list of builtin function
|
|
"""
|
|
|
|
if utils.is_iterable(func):
|
|
# func is a list of builtin
|
|
_check_builtin_func_list(func)
|
|
return func
|
|
elif isinstance(func, BuiltinFunction):
|
|
# func is one builtin-in
|
|
return [func]
|
|
else:
|
|
# func is one UDF
|
|
if not callable(func):
|
|
raise DGLError('User-defined %s function must be callable.'
|
|
' Got: %s' % (func_name, str(func)))
|
|
return func
|
|
|
|
def _apply_with_accum(graph, var_nodes, var_nf, var_accum, apply_func):
|
|
"""Apply with accumulated features.
|
|
|
|
Paramters
|
|
---------
|
|
var_nodes : var.IDX
|
|
The nodes.
|
|
var_nf : var.FEAT_DICT
|
|
The node features.
|
|
var_accum : var.FEAT_DICT
|
|
The accumulated features.
|
|
apply_func : callable, None
|
|
The apply function.
|
|
"""
|
|
if apply_func:
|
|
# To avoid writing reduced features back to node frame and reading
|
|
# it again for apply phase. Instead, we first read the the node
|
|
# features and "merge" it with the reduced features.
|
|
v_nf = ir.READ_ROW(var_nf, var_nodes)
|
|
v_nf = ir.UPDATE_DICT(v_nf, var_accum)
|
|
def _afunc_wrapper(node_data):
|
|
nbatch = NodeBatch(graph, var_nodes.data, node_data)
|
|
return apply_func(nbatch)
|
|
afunc = var.FUNC(_afunc_wrapper)
|
|
applied_feat = ir.NODE_UDF(afunc, v_nf)
|
|
final_feat = ir.UPDATE_DICT(var_accum, applied_feat)
|
|
else:
|
|
final_feat = var_accum
|
|
return final_feat
|
|
|
|
def _gen_reduce(graph, reduce_func, edge_tuples, recv_nodes):
|
|
"""
|
|
graph : DGLGraph
|
|
reduce_func : callable
|
|
edge_tuples : tuple of utils.Index
|
|
recv_nodes : utils.Index
|
|
"""
|
|
_, dst, eid = edge_tuples
|
|
rfunc = _standardize_func_usage(reduce_func, 'reduce')
|
|
rfunc_is_list = utils.is_iterable(rfunc)
|
|
# Create a tmp frame to hold the feature data.
|
|
# The frame has the same size and schemes of the
|
|
# node frame.
|
|
# TODO(minjie): should replace this with an IR call to make the program
|
|
# stateless.
|
|
tmpframe = FrameRef(frame_like(graph._node_frame._frame, len(recv_nodes)))
|
|
|
|
# vars
|
|
var_msg = var.FEAT_DICT(graph._msg_frame, 'msg')
|
|
var_nf = var.FEAT_DICT(graph._node_frame, 'nf')
|
|
var_out = var.FEAT_DICT(data=tmpframe)
|
|
|
|
if rfunc_is_list:
|
|
# UDF message + builtin reducer
|
|
# analyze e2v spmv
|
|
spmv_rfunc, rfunc = spmv.analyze_e2v_spmv(graph, rfunc)
|
|
inc = spmv.build_inc_matrix_eid(graph._msg_frame.num_rows, eid, dst,
|
|
recv_nodes)
|
|
spmv.gen_e2v_spmv_schedule(inc, spmv_rfunc, var_msg, var_out)
|
|
|
|
if len(rfunc) == 0:
|
|
# All mfunc and rfunc has been processed.
|
|
return var_out
|
|
|
|
# convert the remaining rfunc to UDFs
|
|
rfunc = BundledFunction(rfunc)
|
|
|
|
# gen degree bucketing schedule for UDF recv
|
|
db.gen_degree_bucketing_schedule(graph, rfunc, eid, dst,
|
|
recv_nodes, var_nf, var_msg, var_out)
|
|
return var_out
|
|
|
|
def _gen_send_reduce(
|
|
graph,
|
|
src_node_frame,
|
|
dst_node_frame,
|
|
edge_frame,
|
|
message_func,
|
|
reduce_func,
|
|
var_send_edges,
|
|
var_reduce_nodes,
|
|
uv_getter,
|
|
adj_creator,
|
|
inc_creator):
|
|
"""Generate send and reduce schedule.
|
|
|
|
This guarantees that the returned reduced features are batched
|
|
in the *unique-ascending* order of the edge destination node ids.
|
|
|
|
Parameters
|
|
----------
|
|
graph : DGLGraph
|
|
The graph
|
|
src_node_frame : NodeFrame
|
|
The node frame of the source nodes.
|
|
dst_node_frame : NodeFrame
|
|
The node frame of the destination nodes.
|
|
edge_frame : NodeFrame
|
|
The frame for the edges between the source and destination nodes.
|
|
message_func : callable, list of builtins
|
|
The message func(s).
|
|
reduce_func : callable, list of builtins
|
|
The reduce func(s).
|
|
var_send_edges : var.IDX
|
|
The edges (ids) to perform send.
|
|
var_reduce_nodes : var.IDX
|
|
The nodes to perform reduce. This should include unique(v) + 0deg nodes.
|
|
uv_getter : callable
|
|
A function that returns a pair of var.IDX (u, v) for the triggered edges.
|
|
adj_creator : callable
|
|
A function that returns the adjmat and the shuffle index.
|
|
inc_creator : callable
|
|
A function that returns the incmat and the shuffle index.
|
|
|
|
Returns
|
|
-------
|
|
var.FEAT_DICT
|
|
The reduced feature dict.
|
|
"""
|
|
# NOTE: currently, this function requires all var.IDX to contain concrete data.
|
|
reduce_nodes = var_reduce_nodes.data
|
|
|
|
# arg vars
|
|
var_src_nf = var.FEAT_DICT(src_node_frame, name='nf')
|
|
var_dst_nf = var.FEAT_DICT(dst_node_frame, name='nf')
|
|
var_ef = var.FEAT_DICT(edge_frame, name='ef')
|
|
var_eid = var_send_edges
|
|
|
|
# format the input functions
|
|
mfunc = _standardize_func_usage(message_func, 'message')
|
|
rfunc = _standardize_func_usage(reduce_func, 'reduce')
|
|
mfunc_is_list = utils.is_iterable(mfunc)
|
|
rfunc_is_list = utils.is_iterable(rfunc)
|
|
|
|
# Create a tmp frame to hold the feature data.
|
|
# The frame has the same size and schemes of the
|
|
# node frame.
|
|
# TODO(minjie): should replace this with an IR call to make the program stateless.
|
|
tmpframe = FrameRef(frame_like(dst_node_frame._frame, len(reduce_nodes)))
|
|
var_out = var.FEAT_DICT(data=tmpframe)
|
|
|
|
if mfunc_is_list and rfunc_is_list:
|
|
# builtin message + builtin reducer
|
|
# analyze v2v spmv
|
|
spmv_pairs, mfunc, rfunc = spmv.analyze_v2v_spmv(graph, mfunc, rfunc)
|
|
adj = adj_creator()
|
|
spmv.gen_v2v_spmv_schedule(adj, spmv_pairs, var_src_nf, var_ef, var_eid, var_out)
|
|
|
|
if len(mfunc) == 0:
|
|
# All mfunc and rfunc have been converted to v2v spmv.
|
|
return var_out
|
|
|
|
if mfunc_is_list:
|
|
# Two cases:
|
|
# - mfunc is builtin while rfunc is UDF.
|
|
# - mfunc and rfunc are both builtin but some combinations
|
|
# fall through from the v2v spmv analysis.
|
|
# In both cases, convert the mfunc to UDF.
|
|
mfunc = BundledFunction(mfunc)
|
|
|
|
# generate UDF send schedule
|
|
var_u, var_v = uv_getter()
|
|
var_mf = _gen_send(graph, var_src_nf, var_dst_nf, var_ef, var_u, var_v, var_eid, mfunc)
|
|
|
|
if rfunc_is_list:
|
|
# UDF message + builtin reducer
|
|
# analyze e2v spmv
|
|
spmv_rfunc, rfunc = spmv.analyze_e2v_spmv(graph, rfunc)
|
|
inc = inc_creator()
|
|
spmv.gen_e2v_spmv_schedule(inc, spmv_rfunc, var_mf, var_out)
|
|
|
|
if len(rfunc) == 0:
|
|
# All mfunc and rfunc has been processed.
|
|
return var_out
|
|
|
|
# convert the remaining rfunc to UDFs
|
|
rfunc = BundledFunction(rfunc)
|
|
|
|
# gen degree bucketing schedule for UDF recv
|
|
mid = utils.toindex(slice(0, len(var_v.data))) # message id is from 0~|dst|
|
|
db.gen_degree_bucketing_schedule(
|
|
graph, rfunc, mid, var_v.data, reduce_nodes, var_dst_nf, var_mf, var_out)
|
|
return var_out
|
|
|
|
def _gen_send(graph, src_nfr, dst_nfr, efr, u, v, eid, mfunc):
|
|
"""Internal function to generate send schedule."""
|
|
fdsrc = ir.READ_ROW(src_nfr, u)
|
|
fddst = ir.READ_ROW(dst_nfr, v)
|
|
fdedge = ir.READ_ROW(efr, eid)
|
|
def _mfunc_wrapper(src_data, edge_data, dst_data):
|
|
ebatch = EdgeBatch(graph, (u.data, v.data, eid.data),
|
|
src_data, edge_data, dst_data)
|
|
return mfunc(ebatch)
|
|
_mfunc_wrapper = var.FUNC(_mfunc_wrapper)
|
|
msg = ir.EDGE_UDF(_mfunc_wrapper, fdsrc, fdedge, fddst)
|
|
return msg
|
|
|
|
_init_api("dgl.runtime.scheduler")
|