6568d0aaf6
[Example] Recommend NFS over copy files ( #2689 )
...
* Update README to use NFS, rather than copying files
* Update README.md
* Update README.md
* Update README.md
* Add ParMetis
* Update README.md
* fix directory.
* fix
* redo.
* fix.
* update.
* add more descriptions
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2021-02-25 20:20:52 +08:00
491d908b55
[Example] Add ARMA for Node Classification ( #2694 )
...
* [example] arma
* update
* update
* update
* update
* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-02-25 17:38:43 +08:00
583aa76621
[Example] Pytorch Seal example ( #2638 )
...
* add seal example
* 1. add paper infomation in examples/README
2. adjust codes
3. option test
* use latest `to_simple` to replace coalesce graph function
* remove outdated codes
* remove useless comment
2021-02-25 15:53:35 +08:00
0526b885ee
[Distributed] Fix the path for distributed partitioning. ( #2700 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
2021-02-24 20:41:41 -08:00
ff64bd0de8
add warning for a bug in README ( #2665 )
2021-02-16 00:16:40 -08:00
e46983f662
[Bug Fix][Example] fix dataloader bug in gxn ( #2631 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-10 11:21:34 +08:00
e4ff484494
[Distributed] Distributed METIS partition ( #2576 )
...
* add convert.
* fix.
* add write_mag.
* fix convert_partition.py
* write data.
* use pyarrow to read.
* update write_mag.py
* fix convert_partition.py.
* load node/edge features when necessary.
* reshuffle nodes.
* write mag correctly.
* fix a bug: inner nodes in a partition might be empty.
* fix bugs.
* add verify code.
* insert reverse edges.
* fix a bug.
* add get node/edge data.
* add instructions.
* remove unnecessary argument.
* update distributed preprocessing.
* fix readme.
* fix.
* fix.
* fix.
* fix readme.
* fix doc.
* fix.
* update readme
* update doc.
* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
2021-02-08 17:19:18 -08:00
48d357b8f6
Fix numbers ( #2641 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-08 14:05:30 +08:00
ae18d7f04e
[Example]Add dependencies for GNN-Film and dagnn ( #2633 )
...
* add dependencies for GNN-Film and dagnn
* fix
* fix
* fix
2021-02-08 10:42:32 +08:00
3cf42fd199
[Bug Fix][Example] hgp-sl: More info for running ( #2634 )
...
* [Bug Fix][Example] hgp-sl: More info for running
* change list to table
* change dataset summary in gxn and sagpool
* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-05 18:26:33 +08:00
3ca52b1e59
[Fix] Various Fix after Bug Bash ( #2620 )
...
* update
* Misc fix
* Update
2021-02-05 17:34:16 +08:00
f8c9d58aed
[Bug] Hardgat enable gpu training ( #2632 )
...
* add multihead in DotGatConv
* Fix spacing issue
* Add Unit test for dotgat
* Modified Unit test for dotgat
* Add transformer like divisor
* Update dotgatconv.py
* Update hgao.py
* Update train.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 16:52:41 +08:00
23afe911b2
[Bug Fix] Fix several sparse optimizer bugs ( #2596 )
...
* Fix pytorch TCP kvstore bug
* lint
* Fix
* upd
* Fix lint
* Fix
* trigger
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-05 11:49:41 +08:00
2f71bc507a
[Example] Neural Graph Collaborative Filtering (NGCF). ( #2612 )
...
* ngcf
* ngcf
* update
* ngcf
* ngcf
* remove data
* update
* data
Co-authored-by: zhjwy9343 <6593865@qq.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 00:32:21 +08:00
94ab9709a7
[Bugfix] fix a typo in consis_loss function ( #2616 )
2021-02-04 11:59:41 +08:00
ff345c2e22
[Example] update PointNet and PointNet++ examples for Part Segmentation ( #2547 )
...
* [Model] update PointNet example for Part Segmentation
* Fixed issues with pointnet examples
* update the README
* Added image
* Fixed README and tensorboard arguments
* clean
* Add timing
* Update README.md
* Update README.md
Fixed a typo
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 22:15:46 +08:00
b1840f49fa
[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 ( #2592 )
...
* Update
* Update
* Update
* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 21:00:45 +08:00
b04cf65b2b
[Bugfix] Fix sparseadam bug in metapath2vec(pytorch) ( #2607 )
...
It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by:
optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr)
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-02-03 17:27:20 +08:00
a7e941c379
[Feature] Add support for sparse embedding ( #2451 )
...
* Add sparse embedding for dgl and update rgcn example
* upd
* Fix
* Revert "Fix"
This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.
* Fix
* upd
* upd
* Fix
* Add unitest and update impl
* fix
* Clean up rgcn example code
* upd
* upd
* update
* Fix
* update score
* sparse for sage
* remove model sparse
* upd
* upd
* remove global norm
* revert delete model_sparse.py
* update according to comments
* Fix doc
* upd
* Fix test
* upd
* lint
* lint
* lint
* upd
* upd
* clean up
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-01-28 00:26:49 +08:00
8e981db960
[Example] Add Graph Cross Net (GXN) example for pytorch backend ( #2559 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
* [Example] add graph classification example HGP-SL
* [Example] fix sagpool
* fix bug
* [Example] change tab to space in README of hgp-sl
* remove redundant files
* remote redundant network
* [Example]: change link from code to doc in HGP-SL
* [Example] in HGP-SL, change to meaningful name
* [Example] Fix path mistake for 'hardgat'
* [Bug Fix] Fix undefined var bug in LegacyTUDataset
* upt
* [Bug Fix] Fix cache file name bug in TUDataset
* [Example] Add GXN example for pytorch backend
* modify readme
* add more exp result
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-01-27 18:14:27 +08:00
8900450d9e
[Example] DAGNN ( #2545 )
...
* dagnn
* dagnn
* Update README.md
* Update README.md
* fixed some details
* fixed some details
* Update README.md
* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-01-26 17:06:32 +08:00
6c23fba8fa
[Doc][Org] move edge_softmax to functional ( #2442 )
...
* move edge_softmax to functional
* change examples
* fixes
* revert
* fix
* fix
* remove
* fix
* test
* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-26 12:46:37 +08:00
25ac334403
[Distributed] Heterogeneous graph support ( #2457 )
...
* Distributed heterograph (#3 )
* heterogeneous graph partition.
* fix graph partition book for heterograph.
* load heterograph partitions.
* update DistGraphServer to support heterograph.
* make DistGraph runnable for heterograph.
* partition a graph and store parts with homogeneous graph structure.
* update DistGraph server&client to use homogeneous graph.
* shuffle node Ids based on node types.
* load mag in heterograph.
* fix per-node-type mapping.
* balance node types.
* fix for homogeneous graph
* store etype for now.
* fix data name.
* fix a bug in example.
* add profiler in rgcn.
* heterogeneous RGCN.
* map homogeneous node ids to hetero node ids.
* fix graph partition book.
* fix DistGraph.
* shuffle eids.
* verify eids and their mappings when loading a partition.
* Id map from homogneous Ids to per-type Ids.
* verify partitioned results.
* add test for distributed sampler.
* add mapping from per-type Ids to homogeneous Ids.
* update example.
* fix DistGraph.
* Revert "add profiler in rgcn."
This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676.
* add tests for homogeneous graphs.
* fix a bug.
* fix test.
* fix for one partition.
* fix for standalone training and evaluation.
* small fix.
* fix two bugs.
* initialize projection matrix.
* small fix on RGCN.
* Fix rgcn performance (#17 )
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix.
* fix test.
* fix lint.
* test partitions.
* remove redundant test for partitioning.
* remove commented code.
* fix partition.
* fix tests.
* fix RGCN.
* fix test.
* fix test.
* fix test.
* fix.
* fix a bug.
* update dmlc-core.
* fix.
* fix rgcn.
* update readme.
* add comments.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
* fix.
* fix.
* add div_int.
* fix.
* fix.
* fix lint.
* fix.
* fix.
* fix.
* adjust.
* move code.
* handle heterograph.
* return pytorch tensor in GPB.
* remove some tests in example.
* add to_block for distributed training.
* use distributed to_block.
* remove unnecessary function in DistGraph.
* remove distributed to_block.
* use pytorch tensor.
* fix a bug in ntypes and etypes.
* enable norm.
* make the data loader compatible with the old format.
* fix.
* add comments.
* fix a bug.
* add test for heterograph.
* support partition without reshuffle.
* add test.
* support partition without reshuffle.
* fix.
* add test.
* fix bugs.
* fix lint.
* fix dataset.
* fix for mxnet.
* update docstring.
* rename to floor_div
* avoid exposing NodePartitionPolicy and EdgePartitionPolicy.
* fix docstring.
* fix error.
* fixes.
* fix comments.
* rename.
* rename.
* explain IdMap.
* fix docstring.
* fix docstring.
* update docstring.
* remove the code of returning heterograph.
* remove argument.
* fix example.
* make GraphPartitionBook an abstract class.
* fix.
* fix.
* fix a bug.
* fix a bug in example
* fix a bug
* reverse heterograph sampling.
* temp fix.
* fix lint.
* Revert "temp fix."
This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381.
* compute norm.
* Revert "reverse heterograph sampling."
This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9.
* fix.
* move id_map.py
* remove check
* add more comments.
* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
2021-01-24 19:18:00 -08:00
2c6d071617
[Feature] QM9 Dataset Support ( #2521 )
...
* [Model] MixHop for Node Classification task
* [docs] update
* [docs] update
* [fix] remove seed option
* [fix] update readme
* [feature] support qm9 dataset
* [style] update
* [docs] fix the details
* [fix] indexing only support int
* [style] update
* [fix] multiple backends support
* [docs] add qm9
* [fix] Z type: float32 -> int32
* [fix] Z type: int32 -> long
* [docs] add ref
* [docs] fix
* [docs] update
* [docs] update
* [fix] test eval
* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-01-21 01:33:30 +08:00
8a2b54d1d4
Add a TensorFlow example for SGC ( #2480 )
...
This is a TensorFlow implementation of Simple Graph Convolution. For
simplicity, we use the implementation of AdamW in TensorFlow Addons
that differs from Adam in PyTorch. This results in worse performance
on the evaluation datasets.
Co-authored-by: Josh Carty <joshuac@spotify.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-01-20 15:35:32 +08:00
b36b6c268e
[Example] Add HGP-SL example for pytorch backend ( #2515 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
* [Example] add graph classification example HGP-SL
* [Example] fix sagpool
* fix bug
* [Example] change tab to space in README of hgp-sl
* remove redundant files
* remote redundant network
* [Example]: change link from code to doc in HGP-SL
* [Example] in HGP-SL, change to meaningful name
* [Example] Fix path mistake for 'hardgat'
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
2021-01-18 17:01:52 +08:00
673cc64c8c
[Example] Add hardGAT example ( #2486 )
...
* Add hgat example
* Add experiment
* Clean code
* clear the code
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Change the code title and folder name
* Ready to merge
* Prepare for rebase and change message passing function
* use git ignore to handle empty file
* change file permission to resolve empty file
* Change permission
* change file mode
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com >
2021-01-15 16:58:19 +08:00
b1fb3c15ec
Update example README.md
2021-01-14 17:19:13 +08:00
a9e16c177c
[Example] GNN-FiLM ( #2476 )
...
* gnnfilm
* update
* readme
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-01-13 22:34:14 +08:00
80fdcfdf83
[Example] Graph Random Neural Network ( #2502 )
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* Add Implementation of GRAND
* Performance updated
* Update README.md
add indexing entries
* add indexing entries for grand
* change grand from 2021 to 2020
* [Example] fix some bugs
* [Examples] fix bug
Co-authored-by: 张恒瑞 <hengrui@macbook.local >
Co-authored-by: 张恒瑞 <hengrui@192.168.124.35 >
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-01-13 14:06:47 +08:00
1502c56d51
[Doc] Fix typo of datasets ( #2517 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-13 12:34:47 +08:00
71283997ce
Integrate Regression Test with Jenkins ( #2448 )
...
* add bench jenkins
* instance type
* fix
* fix
* fix
* 111
* test
* 111
* 111
* fix
* test
* run
* fix
* fix
* fix
* fix
* fix
* publish results
* 111
* regression
* launch ec2 script
* fix
* add
* run on master
* change
* rrr
* run gpu
* fix
* fix
* try fix
* fix
* ff
* fix
* fix
* fix
* refactor
* fix
* fix
* update
* fix
* fix
* fix
* fix
* remove import torchtext
* add shm size
* update
* fix
* fix
* fix
* fix
* fix this!!!!
* 111
* fix
* remove verbose
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* update readme
* fix
* fix
* fix
* change asv default to head
* commit sage and rgcn
* fix
* update
2021-01-11 16:01:51 +08:00
a9f8f2589c
[Doc] Update GraphDataLoader in our docs ( #2504 )
...
* update graphdataloader in docs
* fix
* update examples
* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-11 13:11:19 +08:00
400687d7a8
add venue label filename; delete redundant code ( #2491 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-08 17:05:33 +08:00
79940695de
[Examples][Bug] fix a silly typo in JTNN ( #2505 )
2021-01-07 20:14:45 +08:00
80de340d86
Update README.md ( #2485 )
2021-01-04 15:29:24 +08:00
a8ce095724
update the code of examples/pytorch/metapath2vec.py ( #2463 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-02 01:02:01 +08:00
927d2b319b
[Example] Move Data to GPU before Minibatch Training ( #2453 )
...
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-28 21:26:32 +08:00
72ef642f29
[Example] Add sagpool example for pytorch backend ( #2429 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
2020-12-28 17:44:55 +08:00
0018e90c5a
[Doc] Implementation Index Page ( #2443 )
...
* Update
* Update
* Update
* Update README.md
* Update README.md
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-26 14:37:04 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
...
* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
5c77b61184
[Model] MixHop for Node Classification task ( #2426 )
...
* [Model] MixHop for Node Classification task
* [docs] update
* [docs] update
* [fix] remove seed option
* [fix] update readme
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-12-18 19:28:46 +08:00
0ceb6751a0
Correct error when using enisum ( #2417 )
...
* correct error when using enisum
* Correct error when using enisum
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-13 01:00:03 +08:00
ee8a0e6628
correct error when using enisum ( #2406 )
...
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-08 23:16:10 +08:00
6c0cc1fb76
modify code with buildin function ( #2394 )
...
* modify code with buildin function
* use enisum
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-08 12:46:09 +08:00
62b4bbb494
[Fix] Enable mini-batch rgcn for CPU ( #2345 )
2020-11-16 17:27:54 +08:00
cb2bc69b55
Fix a bug in the data loading of GraphWriter ( #2343 )
...
In the bucket sampler, the length array should be recovered after random picking samples.
2020-11-13 22:33:12 +08:00
88a042d34a
fix reddit self loop ( #2330 )
2020-11-09 14:40:21 +08:00
b8cc26e34a
[Model] SIGN for OGB dataset ( #2316 )
...
* sign for ogbn products, arxiv, mag
* texts
* fix
* update ogb folder readme
* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-11-03 10:28:31 +08:00
269983dbcd
[Fix] typo ( #2265 )
...
* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
Ligeng Zhu