e2e894c3f4
update version
2021-02-25 18:31:32 +00:00
e5aa149e80
update version
2021-02-25 18:31:10 +00:00
bbf4d8d4de
update version
2021-02-25 18:31:10 +00:00
6568d0aaf6
[Example] Recommend NFS over copy files ( #2689 )
...
* Update README to use NFS, rather than copying files
* Update README.md
* Update README.md
* Update README.md
* Add ParMetis
* Update README.md
* fix directory.
* fix
* redo.
* fix.
* update.
* add more descriptions
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2021-02-25 20:20:52 +08:00
99751d4960
[Doc] Rename block to message flow graph ( #2702 )
...
* rename block to mfg
* revert
* rename
2021-02-25 18:26:19 +08:00
491d908b55
[Example] Add ARMA for Node Classification ( #2694 )
...
* [example] arma
* update
* update
* update
* update
* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-02-25 17:38:43 +08:00
583aa76621
[Example] Pytorch Seal example ( #2638 )
...
* add seal example
* 1. add paper infomation in examples/README
2. adjust codes
3. option test
* use latest `to_simple` to replace coalesce graph function
* remove outdated codes
* remove useless comment
2021-02-25 15:53:35 +08:00
0526b885ee
[Distributed] Fix the path for distributed partitioning. ( #2700 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
2021-02-24 20:41:41 -08:00
7ab3d993a4
Change the absolute path to relative one in part_config.json ( #2690 )
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* Update partition.py
* fix lint.
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-02-24 16:12:19 -08:00
1686106390
change __repr__ ( #2696 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-25 00:21:00 +08:00
704ec68576
[Benchmark] Fix benchmark tests and add script to generate excel result ( #2681 )
...
* add script
* 21
* log
* fix regression tests
* add iter time
* fix
* Revert "fix"
This reverts commit 9b4587ad61dfeb82dcce6d1de188809f62947663.
* fix
* fix
* add
* add ogb instruction
* add cu11 dockerfile
* fix
* fix
* more iter apply_edge
* add iteration time
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-24 19:41:49 +08:00
71d53d9eef
add thumbnails for tutorials ( #2695 )
...
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-23 20:33:35 +08:00
da2f690a5a
[Doc] Clarify link prediction tutorial ( #2673 )
...
* link prediction clarification
* fix
2021-02-23 19:41:54 +08:00
7298173ac1
[Doc]Improve docstring for GINDataset ( #2676 )
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* add docstring for gin
* update doc
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-02-23 15:14:10 +08:00
174dd18905
[hotfix] A bunch of fix for SetTransformer ( #2658 )
...
* upd
* lint
* upd
* fix
* fix
* upd
* upd
* fix
* warning
* upd
* upd
2021-02-23 14:19:51 +08:00
48a1794f85
[Doc] Fix the user guide for distributed partitioning. ( #2684 )
...
* fix doc.
* explain the schema file.
* fix.
2021-02-22 18:59:15 -08:00
80c26877de
[Bug Fix] Fix munmap bug in sparse optimizer ( #2675 )
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* Fix munmap bug
* lint
* update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-22 11:33:44 +08:00
16e324daf3
[Bug Fix] Add warning for invalid input graph of edge UDF ( #2682 )
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* Add warning for invalid graph of edge UDF
* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-22 10:12:40 +08:00
72a16b22e4
[bugfix] Fix the behavior of select_topk ( #2688 )
...
* fix
* lint
* lint
2021-02-21 18:52:35 +08:00
e6bf54cdcb
[Feature] Support aggregate multiple edge features in to_simple. ( #2623 )
...
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* fix
* refactor
* upd test
* large feat_len or n in segment reduce
* lint
2021-02-21 10:05:42 +08:00
8a07ab7737
[Doc] Tutorials re-organization ( #2683 )
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* reorg
* change titles
* rm some stale API doc; minor fix
* fix docs
* add warning
* rm new-tutorial run in ci
* lint
2021-02-20 17:42:45 +08:00
0fc649523b
[Doc] Distributed heterogeneous graph training ( #2654 )
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* update DistGraph docstrings.
* add user guide.
* add doc string.
* fix.
* fix.
* fix.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-02-19 10:48:05 -08:00
453d358d2c
[Doc] Fix docs for sparse optimizer ( #2680 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-19 14:07:35 +08:00
9e04a52abd
[Doc] Reorganize tutorial ( #2678 )
2021-02-19 13:49:13 +08:00
dda103d9f6
Fix bug in EdgeConv implementation ( #2669 )
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* Update edgeconv.py
* update edgeconv to builtin
* add explanation on why ReLU is not there
* remove redundant code
2021-02-19 13:07:21 +08:00
d93a975997
revert ( #2672 )
2021-02-19 12:05:42 +08:00
ff64bd0de8
add warning for a bug in README ( #2665 )
2021-02-16 00:16:40 -08:00
0cbaa1fbcb
[Doc] Make the docstring of nn.glob more informative. ( #2649 )
...
* upd
* fix weight and sum
* upd sortpool
2021-02-12 12:29:22 +08:00
9e630101a1
fix and lots of tests ( #2650 )
2021-02-12 11:40:05 +08:00
cf8a3fb305
[hotfix] Address the performance issue of topk. ( #2628 )
...
* upd
* fix
* upd
* upd
* udp
* upd
* upd
* upd
* upd
* upd
* upd
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-02-11 00:00:39 +08:00
e46983f662
[Bug Fix][Example] fix dataloader bug in gxn ( #2631 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-10 11:21:34 +08:00
22ccf4365a
[Test] Tweak end2end benchmarks to be more reasonable ( #2643 )
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* change timeout to reasonable ranges
* rgcn ns
* fix all ns speed tests
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-02-09 11:08:55 +08:00
e4ff484494
[Distributed] Distributed METIS partition ( #2576 )
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* add convert.
* fix.
* add write_mag.
* fix convert_partition.py
* write data.
* use pyarrow to read.
* update write_mag.py
* fix convert_partition.py.
* load node/edge features when necessary.
* reshuffle nodes.
* write mag correctly.
* fix a bug: inner nodes in a partition might be empty.
* fix bugs.
* add verify code.
* insert reverse edges.
* fix a bug.
* add get node/edge data.
* add instructions.
* remove unnecessary argument.
* update distributed preprocessing.
* fix readme.
* fix.
* fix.
* fix.
* fix readme.
* fix doc.
* fix.
* update readme
* update doc.
* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
2021-02-08 17:19:18 -08:00
0aca566000
[Regression] Fix regression tests ( #2639 )
...
* add bench jenkins
* instance type
* fix
* fix
* fix
* 111
* test
* 111
* 111
* fix
* test
* run
* fix
* fix
* fix
* fix
* fix
* publish results
* 111
* regression
* launch ec2 script
* fix
* add
* run on master
* change
* rrr
* run gpu
* fix
* fix
* try fix
* fix
* ff
* fix
* fix
* fix
* refactor
* fix
* fix
* update
* fix
* fix
* fix
* fix
* remove import torchtext
* add shm size
* update
* fix
* fix
* fix
* fix
* fix this!!!!
* 111
* fix
* remove verbose
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* update readme
* fix
* fix
* fix
* change asv default to head
* commit sage and rgcn
* fix
* update
* add benchmarks
* add
* fix
* update
* remove RandomState
* tmp remove
* new batch
* fix
* fix
* fix
* address comment
* fix warning
* fix
* fix
* fix
* fix
* add multiupdate all
* address comment
* fix
* add benchmarks
* add
* fix timing
* fix
* push
* add -v
* [Example] NGCF (#2564 )
* ngcf
* ngcf
* update
Co-authored-by: zhjwy9343 <6593865@qq.com >
* Revert "[Example] NGCF (#2564 )" (#2611 )
This reverts commit a75e04f408c719289f478ca129784e05655d8def.
* fix
* change task
* fix
* fix
* fix2
* enable tensoradapter when benchmark
* minor fix
* trigger ci
* fix
* fix
* fix
* fix
* fix
* fix
* lint
* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com >
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-02-08 17:01:35 +08:00
117dd25204
[Doc] Fix inconsistencies and GPU code ( #2642 )
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* fix inconsistencies and GPu
* bug fixes
* fix
* trigger new tutorials
2021-02-08 16:33:39 +08:00
8ccb8206bf
[Doc] Update docs to motivate the use of set_batch_num_nodes and set_batch_num_edges ( #2630 )
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* fix doc
* update docstring for transformation on batch graph
* update cn guide
* fix format
* update rst
2021-02-08 14:43:24 +08:00
48d357b8f6
Fix numbers ( #2641 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-08 14:05:30 +08:00
bc3a532f5e
[Sampling] Implement dgl.to_block() for the GPU ( #2339 )
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* Add start of to_block gpu implementation
* Pull in more changes from 0.4.2 cuda_to_block
* Move more code to IdArray
* Refactor DeviceNodeMapMaker
* Updates
* get compiling
* Integrate to_block
* Fix ID allocation
* Minor fixes
* Cleanup cuda calls to use cuda_common
* Reduce kernel calls
* Lint cleanup
* Expand documentation
* Remove unused function
* Rename variables for consistency
* Add doxygen comments
* Fix file extension
* Remove raw asynccopy for deviceapi
* Remove unused function
* Fix block/tile configuration
* Add cuda_device_common.cuh
* Add basic hashtable
* Migrate part of hashtable
* Refactor to use external hashtable
* Make functions members
* Format hash table functions
* Migrate duplicate filling
* Move last function over
* Refactor with cu file
* lint c++ code
* Move context check to C++ code
* Use macro switch
* Add missing files
* Update docstring
* update docs
* Move atomic functions
* Refactor hashtable
* Fix linting
* Expand docs
* Fix mismatched argument names
* Switch doxygen comments from using @param to \param
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-08 13:00:43 +08:00
ae18d7f04e
[Example]Add dependencies for GNN-Film and dagnn ( #2633 )
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* add dependencies for GNN-Film and dagnn
* fix
* fix
* fix
2021-02-08 10:42:32 +08:00
98ac391ed9
[Doc] Large graph training tutorials ( #2595 )
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* large graph training tutorials
* add full graph link prediction update
* fix
* fix
* fix
* addressed comments
2021-02-07 17:55:49 +08:00
0346b0aa80
[Test] Add test for Cython and force rebuild when run setup.py ( #2635 )
2021-02-05 22:38:46 +08:00
3cf42fd199
[Bug Fix][Example] hgp-sl: More info for running ( #2634 )
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* [Bug Fix][Example] hgp-sl: More info for running
* change list to table
* change dataset summary in gxn and sagpool
* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-05 18:26:33 +08:00
3ca52b1e59
[Fix] Various Fix after Bug Bash ( #2620 )
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* update
* Misc fix
* Update
2021-02-05 17:34:16 +08:00
f8c9d58aed
[Bug] Hardgat enable gpu training ( #2632 )
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* add multihead in DotGatConv
* Fix spacing issue
* Add Unit test for dotgat
* Modified Unit test for dotgat
* Add transformer like divisor
* Update dotgatconv.py
* Update hgao.py
* Update train.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 16:52:41 +08:00
23afe911b2
[Bug Fix] Fix several sparse optimizer bugs ( #2596 )
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* Fix pytorch TCP kvstore bug
* lint
* Fix
* upd
* Fix lint
* Fix
* trigger
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-05 11:49:41 +08:00
2f71bc507a
[Example] Neural Graph Collaborative Filtering (NGCF). ( #2612 )
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* ngcf
* ngcf
* update
* ngcf
* ngcf
* remove data
* update
* data
Co-authored-by: zhjwy9343 <6593865@qq.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 00:32:21 +08:00
469088ea52
[Test] Add benchmarks for end-to-end training w/ UDF message passing ( #2609 )
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* model acc test
* add model speed test
* [Example] NGCF (#2564 )
* ngcf
* ngcf
* update
Co-authored-by: zhjwy9343 <6593865@qq.com >
* Revert "[Example] NGCF (#2564 )" (#2611 )
This reverts commit d88a9b1b2c52becb8cc7faebceca6e52c763de19.
* use timer
Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com >
Co-authored-by: zhjwy9343 <6593865@qq.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-04 14:40:00 +08:00
94ab9709a7
[Bugfix] fix a typo in consis_loss function ( #2616 )
2021-02-04 11:59:41 +08:00
ff345c2e22
[Example] update PointNet and PointNet++ examples for Part Segmentation ( #2547 )
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* [Model] update PointNet example for Part Segmentation
* Fixed issues with pointnet examples
* update the README
* Added image
* Fixed README and tensorboard arguments
* clean
* Add timing
* Update README.md
* Update README.md
Fixed a typo
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 22:15:46 +08:00
b1840f49fa
[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 ( #2592 )
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* Update
* Update
* Update
* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 21:00:45 +08:00
Quan Gan