mirrors / dmlc--dgl

文件历史

1,911 提交 34 分支 42 Git 标签
0.7.1
提交图

960 次代码提交

作者 SHA1 备注 提交日期
Quan Gan 2b80161865 update version 2021-08-26 17:33:50 +00:00
Konstantinos Vandikas eca9b8ef08 allow for configuring default_dir (#3277) 
* allow for configuring default_dir

* allow for using DGLDEFAULTDIR environment variable

* Update env_var.rst

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-26 17:32:16 +00:00
Rhett Ying d9e2618b20 [Doc] fix formula in RelGraphConv (#3285) 
* [Doc] fix formula in RelGraphConv

* refine descriptions
 2021-08-26 17:32:10 +00:00
Quan (Andy) Gan 1fa3202bbd fix relgraphconv bug (#3256) 2021-08-26 17:31:41 +00:00
Rhett Ying 50b87596b8 [Doc] fix formula display issue in EdgeWeightNorm (#3275) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-26 17:31:35 +00:00
Chen Kai b7af145d0b [bugfix] fix the bug of DotGatConv when compute the edge_softmax (#3272) 
Co-authored-by: Zihao Ye <expye@outlook.com>
 2021-08-20 02:47:54 +00:00
nv-dlasalle d9a2d74167 [Performance][Feature] Implement edge excluding in EdgeDataLoader on GPU (#3226) 
* Update filter code

* Add unit tests

* Fixes

* Switch to indices

* Rename functions

* Fix linting

* Fix whitespace

* Add doc

* Fix heterograph

* Change workspace allocation

* Fix linting

* Fix docs in filter.py

* Add todo

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:47:48 +00:00
Zihao Ye 92550b3b03 [perf] Remove activation cache if not required. (#3258) 
* upd

* fix

* upd
 2021-08-20 02:44:06 +00:00
blokhinnv 731660d23e fixed typos in docs and docstring (#3231) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:41:21 +00:00
Alex Morehead 43c6ccc9bd Fix small typo in knn_graph() documentation (#3244) 2021-08-20 02:40:05 +00:00
nv-dlasalle 55dfef0e81 [Fix] FIx check for num_workers for using ScalarDataBatcher (#3219) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:36:53 +00:00
Mufei Li 72b95fe186 Update citation_graph.py (#3221) 2021-08-20 02:36:20 +00:00
freeliuzc 7466f9b1b8 [feature] add count_nonzero function for DistTensor (#3203) 
* add count_nonzero function for DistTensor

* change the load method of local data

Co-authored-by: liuzichang04 <liuzichang04@meituan.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
 2021-08-20 02:36:15 +00:00
Yuchen b5a1eea5ed [bugfix] Fix force_reload parameter of FraudDataset (#3210) 
* enable force_reload of FraudDataset

* rewrite hash_key in FraudDataset
 2021-08-20 02:33:19 +00:00
Quan (Andy) Gan 526d4ac0bb [Doc] Fix random_walk documentation inconsistency (#3188) 
* Update randomwalks.py

* Update randomwalks.py

FIx lint

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:26:20 +00:00
nv-dlasalle 988cf98e43 Improve usage of pinned memory in sparse_optimizer (#3207) 
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-08-20 02:25:43 +00:00
Jinjing Zhou dfe422dd33 [Distributed] Fix distributed training hang with multiple samplers (#3169) 
Rewrite the multiprocessing worker pool
 2021-08-20 02:24:06 +00:00
Kay Liu fb5464df76 [Model] add model example CARE-GNN (#3187) 
* [Model] add model example CARE-GNN

* update README

* improvements based on the review feedback

* fix missing item()

Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-08-20 02:19:12 +00:00
Rhett Ying 392a2e587d [bugfix] fix default ntypes/etypes consistency between dgl.DGLGraph and dgl.graph (#3198) 2021-08-20 02:18:59 +00:00
Lu Lu 35c898c9e9 Bug fix: change th to tf (#3182) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:14:19 +00:00
Xiangkun Hu 5f5a6ef4f7 [Dataset] Fix the edge numbers in the GNNBenchmarkDataset doc string (#3163) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Hide implementations that may cause confusions to the user

* fix number of classes in Amazon Cobuy datasets

* add four papers

* Fix doc string

* fix readme

* fix readme

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-21 11:07:51 +00:00
Quan Gan 86403757b7 update version 2021-07-19 01:58:21 +00:00
Quan Gan d539bb3d53 update version 2021-07-16 06:29:27 +00:00
Quan Gan 18ddbb0ad3 update version 2021-07-16 06:29:27 +00:00
Jingcheng Yu b379dbd6c8 Optimize dist_graph/_split_even_to_part memory usage (#3132) 
Co-authored-by: yujingcheng02 <yujingcheng02@meituan.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-15 11:51:56 +08:00
Rhett Ying 5cdf7cfa98 [Doc] refine metis part of dgl.reorder_graph() (#3136) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-07-15 10:14:39 +08:00
Mufei Li 3f6f694159 [Bug fix] Various fix from bug bash (#3133) 
* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>
 2021-07-15 09:17:15 +08:00
Quan (Andy) Gan 066bef21f0 [Doc] Fix CoraFull number of edges inconsistency in doc (#3139) 2021-07-14 15:06:57 +08:00
xiang song(charlie.song) d7390763f0 [Distributed] Deprecate old DistEmbedding impl, use synchronized embedding impl (#3111) 
* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* update doc

Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-07-14 00:15:53 +08:00
Mufei Li f0fafa2062 [Bug fix] Fix batch information with remove_nodes/edges applied (#3119) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix lint

* Fix

* Update

* Fix test cases

* Fix

* add docstrings

* Update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-07-13 16:27:31 +08:00
Quan (Andy) Gan 2e19ba8025 add exclude self option for EdgeDataLoader (#3122) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-07-13 13:30:16 +08:00
Quan (Andy) Gan b576e617ad [Feature] Add left normalizer for GCN (#3114) 
* add left normalizer for gcn

* fix

* fixes and some bug stuff
 2021-07-13 12:49:35 +08:00
Rhett Ying 186ef59283 [Feature] apply dgl.reorder() onto several node classification datase… (#3102) 
* [Feature] apply dgl.reorder() onto several node classification datasets in DGL

* rebase on latest dgl.reorder_graph()
 2021-07-13 08:52:17 +08:00
Rhett-Ying 175f53decf [Feature] enable edge reorder in dgl.reorder_graph() (#3113) 
* [Feature] enable edge reorder in dgl.reorder_graph()

* refine doc string

* refine doc string for dgl.reorder_graph

* refine doc string further
 2021-07-12 14:11:46 +08:00
Kay Liu 0ce92a86ed [BugFix] fix problems found in bug bash (#3116) 
* fix breakline in fakenews.py

* fix inconsistent argument name

* modify incorrect example and deprecated graph type

* modify docstring and example in knn_graph

* fix incorrect node type

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-12 13:34:50 +08:00
Wilfried L. Bounsi c7449818a1 Update documentation for remove_edges function (#3123) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-12 12:54:21 +08:00
Quan (Andy) Gan 5798ee8d98 [Performance] Add a warning for ChebConv (#3099) 
* add a warning for chebconv

* fix and docstrings

* update bgnn

* fix

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-07-09 14:49:15 +08:00
Quan (Andy) Gan 2f41fcd986 [Build] fix various build problems (#3117) 2021-07-08 11:39:33 +08:00
Kay Liu bb89dee7ff [BugFix] fix problems in data split (#3082) 
* [BugFix] fix problems in data split

* fix format problems in docstring

* modify statistics to fit in dgl nature

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-07-07 16:07:23 +08:00
Rhett-Ying 32d1f3ac97 [BugFix] skip frames whose num_rows is zero in dgl.heterograph.combine_frames() (#3110) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-07-07 14:15:06 +08:00
Quan (Andy) Gan 751685a979 [Doc] Add documentation for DGLGraph.adj_sparse (#3096) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-07-07 11:24:47 +08:00
Israt Nisa 188152b853 [Feature] Add Heterograph support on Python for builtin unary msg functions (copy_u, copy_e) (#2989) 
* heterograph for binary func

* Added SDDMM support

* Added unittest

* added binary test cases

* unary mfuncs works

* Fixed lint err

* lint check and others

* link check

* fixed import *_hetero issue

* lint check

* replace torch with dgl backend

* lint cehck

* removed torch from test

* skip mxnet unittest

* skip gpu test

* Remove unused/duplicated code

* minor

* changed data structure of ndata and edata

* link check

* reorganized

* minor lint

* minor lint

* raise error for udf func

* lint check

* fix for CUDA 10.1

* add a note for future cross-type max/min reducing

* Add support CUDA < 11

* lint check

* tidied C code

* remove dummy GSDDMM_hetero backward implementation

Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2021-07-06 20:41:58 +08:00
Jinjing Zhou 4556fab8e6 [Fix] Use logging to print warning message in socket creation (#3098) 
* fix

* fix

* lint

* fix

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-06 15:33:43 +08:00
Minjie Wang d3e4460b98 [Doc] Add docstring for missing APIs (#3088) 
* add docstring for missing API; fix some docstring

* rename apis; address comments
 2021-07-05 18:40:07 +08:00
Da Zheng 485c04cff6 [Distributed] Fix a few bugs in distributed API (#3094) 
* fix.

* fix.

* fix.

* fix.

* Fix test

Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
 2021-07-05 15:12:02 +08:00
WangYQ 0851b4df5d Sageconv doc (#3093) 
* revise the doc of forward function in SAGEConv

* remove trailing space
 2021-07-05 09:25:56 +08:00
Da Zheng 0884d02465 [Distributed] Fix bugs in partitioning on heterogeneous graphs. (#3085) 
* fix bugs in partitioning on heterogeneous graphs.

* fix.

* fix.

* fix example.

* fix.

* fix test.

* fix.

* fix.

* fix.

* fix tests.

Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
 2021-07-02 21:16:14 +08:00
Rhett-Ying 04dce1e630 [Doc] refine doc and optimize metis part for dgl.reorder() (#3090) 
Co-authored-by: Tong He <hetong007@gmail.com>
 2021-07-02 20:14:47 +08:00
nv-dlasalle a0390dde93 [Feature] Add dgl.utils.is_sorted_srcdst() (#2685) 
* Add dgl.utils.is_sorted_srcdst

* Fix linting issues

* delete blank line

* Specify datatype to index tensor in test

* Force integer conversion

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-07-02 11:29:24 +08:00
Rhett-Ying 95f8ec83b5 [Doc] fix docstring in to_block() (#3081) 2021-07-02 09:45:45 +08:00