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作者 SHA1 备注 提交日期
Quan (Andy) Gan ce52a5378e fix (#3286) 0.7.1 2021-08-27 01:32:20 +00:00
Quan Gan 2b80161865 update version 2021-08-26 17:33:50 +00:00
Konstantinos Vandikas eca9b8ef08 allow for configuring default_dir (#3277) 
* allow for configuring default_dir

* allow for using DGLDEFAULTDIR environment variable

* Update env_var.rst

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-26 17:32:16 +00:00
Rhett Ying d9e2618b20 [Doc] fix formula in RelGraphConv (#3285) 
* [Doc] fix formula in RelGraphConv

* refine descriptions
 2021-08-26 17:32:10 +00:00
kalinin-sanja 7d2eed64f1 [Doc] Update 4_rgcn.py (#3261) 
There is some misleading text.

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-08-26 17:31:56 +00:00
Quan (Andy) Gan 1fa3202bbd fix relgraphconv bug (#3256) 2021-08-26 17:31:41 +00:00
Rhett Ying 50b87596b8 [Doc] fix formula display issue in EdgeWeightNorm (#3275) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-26 17:31:35 +00:00
Jinjing Zhou b1ffa231b2 add flag (#3264) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-26 17:31:23 +00:00
Peiqi Yin 3f915a134b GeniePath model add a Tanh. (#3269) 
* Update model.py

* Update README.md

Co-authored-by: Zihao Ye <expye@outlook.com>
 2021-08-26 17:31:03 +00:00
Chen Kai b7af145d0b [bugfix] fix the bug of DotGatConv when compute the edge_softmax (#3272) 
Co-authored-by: Zihao Ye <expye@outlook.com>
 2021-08-20 02:47:54 +00:00
nv-dlasalle d9a2d74167 [Performance][Feature] Implement edge excluding in EdgeDataLoader on GPU (#3226) 
* Update filter code

* Add unit tests

* Fixes

* Switch to indices

* Rename functions

* Fix linting

* Fix whitespace

* Add doc

* Fix heterograph

* Change workspace allocation

* Fix linting

* Fix docs in filter.py

* Add todo

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:47:48 +00:00
nv-dlasalle ae3a325d62 [bugfix] Link against pytorch library by name rather than path (attempting to fix linking issue). (#3246) 
* Use library name

* fix for mac builds from source

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:45:47 +00:00
maqy 682c3e78c6 [Model] add model example EvolveGCN. (#3190) 
* add evolveGCN example

* small fix

* fix defect

* fix defect

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:45:36 +00:00
Quan (Andy) Gan 3ccd4a29e8 fix cuda 11.1 crashing bug (#3265) 2021-08-20 02:44:56 +00:00
Zihao Ye 92550b3b03 [perf] Remove activation cache if not required. (#3258) 
* upd

* fix

* upd
 2021-08-20 02:44:06 +00:00
Eric Kim 10beb7b2e0 [Tools] In tools/launch.py, correctly pass all DGL client/server env vars if udf is a multi-command (#3245) 
* Correctly pass all DGL client/server env vars if udf is a multi-command

* Refactor to use wrap_cmd_with_local_envvars() helper fn
 2021-08-20 02:42:54 +00:00
Jinjing Zhou d0811aeb9f Fix regression test (#3257) 2021-08-20 02:42:43 +00:00
Peiqi Yin 006ceb6c8e [Model] Fix diffpool loss (#3233) 2021-08-20 02:42:18 +00:00
blokhinnv 731660d23e fixed typos in docs and docstring (#3231) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:41:21 +00:00
Alex Morehead 43c6ccc9bd Fix small typo in knn_graph() documentation (#3244) 2021-08-20 02:40:05 +00:00
JOHNW02 0ed0d232ce [example] Create EEG-GCNN example. (#3186) 
* Create EEG-GCNN example.

* Update README.md

* Remove gitignore file.

* Update README.md

* change 'datas' to 'datasets'.

* Change train.py to main.py

* Added an entry in the indexing page.

* State "simplified version"; change how to run.

* Fix bug in contact

* Remove paper link in reference.

* Create working branch

* Add normalization of x.

* Update paper link and tags

* Update paper link in readme

* Update readme; add patient level indices

* Update readme. Add comments to models

* Update README.md

* change to with; specify location for ch and el; move note

* fix bug for note

* Add args for models; clean code.

* delete = in readme

* Add reference for spec_coh_values
 2021-08-20 02:39:06 +00:00
nv-dlasalle 563de608fe [bugfix] Only link the pytorch tensordispatcher against libtorch (#3225) 
* Only link tensordispatcher against pytorch

* Only modify libraries when not using MSVC
 2021-08-20 02:38:52 +00:00
nv-dlasalle 55dfef0e81 [Fix] FIx check for num_workers for using ScalarDataBatcher (#3219) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:36:53 +00:00
Mufei Li 72b95fe186 Update citation_graph.py (#3221) 2021-08-20 02:36:20 +00:00
freeliuzc 7466f9b1b8 [feature] add count_nonzero function for DistTensor (#3203) 
* add count_nonzero function for DistTensor

* change the load method of local data

Co-authored-by: liuzichang04 <liuzichang04@meituan.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
 2021-08-20 02:36:15 +00:00
Jinjing Zhou 9310d399be Fix typos (#3214) 2021-08-20 02:34:20 +00:00
Yuchen b5a1eea5ed [bugfix] Fix force_reload parameter of FraudDataset (#3210) 
* enable force_reload of FraudDataset

* rewrite hash_key in FraudDataset
 2021-08-20 02:33:19 +00:00
Ankit Garg d0dcda1c10 [Feature] Add removed edges in distributed graph partitioning to handle heterogeneous graph (#3137) 
* Added code for Rectifying (TypeError: unhashable type: 'slice') when copying file

* 1) added distributed preprocessing code to create ParMetis Input from CSV files
2) add code to run pm_dglpart on multiple machines
3) added support for recreating heteregenous graph from homo geneous graph based on dropped edges, as ParMetis currently only supports homogeneous graphs

* move to pandas

* Added comments and remove drop_duplicates as it was redundant

* Addressed Pr Comments

* Rename variable

* Added comment

* Added comment

* updated ReadMe

Co-authored-by: Ankit Garg <gaank@amazon.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
 2021-08-20 02:30:05 +00:00
nv-dlasalle e80c409f57 [bugfix] Fix curand_init() calls in rowwise sampling (#3196) 
* Split out separate generators for each thread

* Amortize cost of curand_init

* Improve readability

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-20 02:29:49 +00:00
Eric Kim a172b48465 [Tools] Refactor tools/launch.py to handle more python binary names (#3205) 
* Refactors torch dist launcher udf-wrap code to handle more python versions

* minor changes
 2021-08-20 02:27:13 +00:00
Tianjun Xiao 6f476aa862 Add four dgl papers (#3212) 2021-08-20 02:26:39 +00:00
Quan (Andy) Gan 526d4ac0bb [Doc] Fix random_walk documentation inconsistency (#3188) 
* Update randomwalks.py

* Update randomwalks.py

FIx lint

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:26:20 +00:00
xiang song(charlie.song) 0cb358d8b8 [Readme] Add pytorch direct to Awesome Papers Using DGL (#3211) 
* Add pytorch direct to Awesome Papers Using DGL

* update
 2021-08-20 02:26:13 +00:00
nv-dlasalle 988cf98e43 Improve usage of pinned memory in sparse_optimizer (#3207) 
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-08-20 02:25:43 +00:00
Xiangkun Hu 28524463d1 [Doc] Add two papers to Awesome Paper List (#3208) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user

* add papers

* fix number of classes in Amazon Cobuy datasets

* add two papers to Awesome paper list

* Update README.md

* add four papers

* add two papers

* Add awesome papers

* Fix index in paper list

* Add paper to paperlist

* add two papers

* add two papers

* Update README.md

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-08-20 02:24:16 +00:00
Jinjing Zhou dfe422dd33 [Distributed] Fix distributed training hang with multiple samplers (#3169) 
Rewrite the multiprocessing worker pool
 2021-08-20 02:24:06 +00:00
Mufei Li d87e575dda Update README.md (#3209) 2021-08-20 02:23:25 +00:00
Eric Kim 26e47def43 [Tools] Adds --ssh_username to the dist launcher (tools/launch.py) (#3202) 2021-08-20 02:19:51 +00:00
Lu Lu 1229b35cf6 Remove DGL_LOADALL=true (#3150) 
DGL_LOADALL=true is not used in the code anymore.
 2021-08-20 02:19:46 +00:00
Kay Liu 043806e325 [model] add model example GeniePath (#3199) 
* [model] add model example GeniePath

* improvements based on feedback

* improvements based on feedback

Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-08-20 02:19:35 +00:00
Jinjing Zhou ebee359e25 Fix shared memory in unit test (#3204) 2021-08-20 02:19:24 +00:00
KounianhuaDu e6f2ffa48b fix (#3167) 
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-08-20 02:19:17 +00:00
Kay Liu fb5464df76 [Model] add model example CARE-GNN (#3187) 
* [Model] add model example CARE-GNN

* update README

* improvements based on the review feedback

* fix missing item()

Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-08-20 02:19:12 +00:00
Rhett Ying 392a2e587d [bugfix] fix default ntypes/etypes consistency between dgl.DGLGraph and dgl.graph (#3198) 2021-08-20 02:18:59 +00:00
Jinjing Zhou decd41fe18 [Doc] Fix WeightBasis documentation (#3189) 
* fix

* fix type

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-08-20 02:18:38 +00:00
Minjie Wang f6a0182039 Update README.md 2021-08-20 02:18:10 +00:00
Minjie Wang a33e327f41 Update README.md 2021-08-20 02:18:05 +00:00
Lu Lu 35c898c9e9 Bug fix: change th to tf (#3182) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-08-20 02:14:19 +00:00
Jingcheng Yu ffa5826724 [Bugfix] fix potential starving in socket receiver (#3176) 
Co-authored-by: JingchengYu94 <jingchengyu94@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-08-20 02:12:49 +00:00
Kay Liu e4d0b11872 [Model] add model example GCN-based Anti-Spam (#3145) 
* add model example GCN-based Anti-Spam

* update example index

* add usage info

* improvements as per comments

* fix image invisiable problem

* add image file

Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-08-20 02:12:39 +00:00