d4a1be3266
update meta
2021-04-07 08:35:50 +00:00
15382297e8
update conda branch
2021-04-07 08:35:50 +00:00
10009cc1d5
update version
2021-04-07 08:35:50 +00:00
f33f022626
Update message.rst ( #2809 )
2021-04-07 08:35:50 +00:00
48b9ecd201
Fix discrepancy in dgl.dataloading.EdgeDataLoader ( #2819 )
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* fix discrepancy
* address comments
2021-04-07 16:08:14 +08:00
2afa3598ba
[Example] JKNet ( #2795 )
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* [example] jknet
* update
* update
* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-04-07 14:29:33 +08:00
2980137719
[Doc] Typo in command example. ( #2816 )
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* Typo in command example.
process_nowplaying_rs.py is the right name under this folder.
* Update README.md
* Update README.md
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-04-07 09:43:37 +08:00
672e322719
[Model] Add BGNN example ( #2740 )
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* Add BGNN example
* Update bgnn example
* Remove uncessary files
* update model index
* style fix
* Add Readme for BGNN example
* Update documentation; remove preprocessing
Co-authored-by: s.ivanov <s.ivanov@mesos-slave080-am6.central.criteo.prod >
Co-authored-by: s.ivanov <s.ivanov@mesos-slave150-am6.central.criteo.prod >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
Co-authored-by: s.ivanov <s.ivanov@mesos-slave148-am6.central.criteo.prod >
Co-authored-by: s.ivanov <s.ivanov@mesos-slave078-am6.central.criteo.prod >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-04-07 00:16:09 +08:00
3301bd0bcc
bump nightly to 0.7 ( #2814 )
2021-04-06 13:51:26 +08:00
e61138be19
[Example] CompGCN ( #2768 )
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* compgcn
* readme
* readme
* update
* readme
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-04-05 20:45:38 +08:00
cfe6e70b7a
RGAT baseline for OGB-LSC node classification challenge ( #2810 )
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* RGAT baseline
* update links (data.dgl.ai hasn't refreshed yet)
* nvm still use dgl.ai domain
* descriptions
* actually it took less
* address comments
* stop worrying about cache
* update links
* oops
2021-04-05 18:21:18 +08:00
05c53ca38e
[Performance] Prefer parallelized conversion to CSC from COO instead of transposing CSR ( #2793 )
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* fix coo2csr speed
* add comments
2021-04-05 16:38:36 +08:00
86229d426f
[Distributed] Automatically setting the number of OMP threads for trainers ( #2812 )
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* set omp thread.
* add comment.
* fix.
2021-04-04 11:50:28 -07:00
cba5af22eb
[bugfix] Fix bugs in vgae ( #2727 )
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* [Example]Variational Graph Auto-Encoders
* change dgl dataset to single directional graph
* clean code
* refresh
* fix bug
* fix bug
* fix bug
* add gpu
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-04-03 20:02:04 +08:00
b2e35e6aa9
[Performance] Linear UniformChoice optimization ( #2710 )
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Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-04-01 16:29:49 +08:00
54c74803b2
[CI] Disable distributed KVStore UT ( #2805 )
2021-04-01 16:00:56 +08:00
d6f856318a
[Doc] Add two papers to Awesome DGL Papers ( #2799 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* data pipeline user guide
* remove chapter numbers
* Update data.rst
* image in dataset userguide
* update links using ref
* modify the link of save_graphs and load_graphs in dataset user guide
* move image to s3 server.
* fix links and ref
* Hide implementations that may cause confusions to the user
* add papers
* fix number of classes in Amazon Cobuy datasets
* add two papers to Awesome paper list
* Update README.md
* add four papers
* add two papers
2021-04-01 14:38:28 +08:00
b49cd0952f
[Bugfix] Fix feature type of 'ENZYMES' in TUDataset ( #2800 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Hide implementations that may cause confusions to the user
* fix number of classes in Amazon Cobuy datasets
* add four papers
* fix feature type of TU dataset
* fix readme
* remove commented codes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-04-01 14:36:55 +08:00
1f4c0b7193
Fix processing of QM9EdgeDataset ( #2801 )
2021-04-01 10:13:51 +08:00
e36c5db614
[Distributed] Simplify distributed API ( #2775 )
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* remove num_workers.
* remove num_workers.
* remove num_workers.
* remove num-servers.
* update error message.
* update docstring.
* fix docs.
* fix tests.
* fix test.
* fix.
* print messages in test.
* fix.
* fix test.
* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
2021-03-29 19:19:23 -07:00
97863ab85b
[Distributed] Cleanup the process pool correctly when the process exits. ( #2781 )
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Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-03-29 14:53:51 -07:00
66f7fe8bce
Update model.py ( #2796 )
2021-03-29 16:30:32 +08:00
2952f3c473
Update subgraph.py ( #2784 )
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Co-authored-by: Zihao Ye <expye@outlook.com >
2021-03-29 14:58:39 +08:00
a655123b4e
[Example] Baselines for OGB-LSC-PCQM4M ( #2778 )
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* Update
* Add files via upload
* Add files via upload
* Add files via upload
2021-03-29 14:07:07 +08:00
0576a33b7f
Update convert.py ( #2789 )
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Co-authored-by: Zihao Ye <expye@outlook.com >
2021-03-28 20:59:52 +08:00
a1b5b42af4
remove unused and undefined function ( #2791 )
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Co-authored-by: messi-k <messi.k@kakaocorp.com >
2021-03-28 00:17:11 +08:00
e22087aa36
[BUG] fix for zero degree nodes ( #2786 )
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* fix for zero degree nodes
* Update python/dgl/ops/spmm.py
linting fix
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com >
Co-authored-by: Konstantin Sofeikov <konstantin.sofeikov@complyadvantage.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com >
2021-03-25 22:09:53 +08:00
0b57ce1867
[Bug] Disable cpu fp16 ( #2783 )
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* disable cpu fp16
* spell mistakes
2021-03-25 18:04:39 +08:00
03482f0a4c
[NN] tf nn for edgeConv ( #2741 )
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* tf nn for edgeConv
* Auto stash before merge of "tf_working" and "origin/tf_working"
* clean up
* added test for edge_conv
* fix
* fix
* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2021-03-25 13:44:07 +08:00
929d863447
[Feature] Sparse-sparse matrix multiplication, addition, and masking ( #2753 )
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* test
* more stuff
* add test
* fixes
* optimize algo
* replace unordered_map with arrays
* lint
* lint x2
* oops
* disable gpu csrmm tests
* remove gpu invocation
* optimize with openmp
* remove python functions
* add back with docstrings
* lint
* lint
* update python interface
* functionize
* functionize
* lint
* lint
2021-03-24 17:24:41 +08:00
d04d59eef9
[Example] Temporal Graph Neural Network ( #2636 )
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* Add hgat example
* Add experiment
* Clean code
* clear the code
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Change the code title and folder name
* Ready to merge
* Prepare for rebase and change message passing function
* use git ignore to handle empty file
* change file permission to resolve empty file
* Change permission
* change file mode
* Finish Coding
* working code cpu
* pyg compare
* Accelerate with batching
* FastMode Enabled
* update readme
* Update README.md
* refractor code
* Fix Bug
* add a simple temporal sampling method
* test results
* add train speed result
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* fix bug
* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal >
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com >
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com >
2021-03-23 08:57:21 +08:00
6999f88f3f
[Model] Add random_start option for Farthest Point Sampler ( #2755 )
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* add random_start option for FPS
* change doc
* change from random_start to start_idx
* change error condition
* change error msg
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-22 21:53:46 +08:00
bcffdb82c9
[Example] Add implementation of mvgrl ( #2739 )
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* [Example ]add mvgrl
* [Doc] add mvgrl to readme
* add more comments
* fix typos
* replace tab with space
* [doc] replace tab with space
* [Doc] fix a typo
* fix minor typos
* fix typos
* fix typos
* fix typos
* fix typos
* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-03-22 21:20:21 +08:00
e6f6c2eb31
[Bugfix] Update deprecated method name in load_graph.py ( #2769 )
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Method `dataset.num_labels` has been deprecated and replaced by `dataset.num_classes`.
Updating the method name to avoid runtime warning.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-22 20:07:32 +08:00
0ff7127a0f
[Bugfix] Wrap cub with CUB_NS_PREFIX and remove dependency on Thrust to linking issues with Torch 1.8 ( #2758 )
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* Wrap cub with prefixes and remove thrust
* Using counting iterator
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-22 20:06:57 +08:00
9aac93ff21
Gnnexplainer ( #2717 )
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* gnn-explainer
* gnn-explainer
* gnn-explainer
* gnn-explainer
* fix
* fix
* fix
* readme
* readme
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-03-22 18:13:08 +08:00
1789972c4b
[Bugfix] add default value for BlockSampler ( #2771 )
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* [Bugfix] add default value for BlockSampler
* [Doc] modify user_guide description about MultiLayerDropoutSample
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-03-22 14:02:27 +08:00
17f863569e
fix ( #2744 )
2021-03-21 22:38:55 -07:00
74c38a1f58
Print error messages when using TCP socket ( #2763 )
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* print error messages.
* fix.
2021-03-21 21:00:22 -07:00
bb54206620
remove pyinstrument. ( #2772 )
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Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-03-21 20:27:12 -07:00
edf644633d
[performance] Optimize the association order of AXW in GraphSAGE. ( #2747 )
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* upd
* lint
* upd
* upd
* compatibility
* upd
* upd
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-03-19 01:41:33 +08:00
366cc7ebf3
[Pickle] Fix HeteroGraphConv pickle problem ( #2761 )
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* fix pickle problem
* lint
* add pickle tests
* fix
* fix
* fix
* fix
* fix for windows
2021-03-18 17:56:28 +08:00
337b155970
[Doc] fix tutorial - blitz 4 link prediction ( #2726 )
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The number of edges should be same as posive eids.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-18 14:36:58 +08:00
09ef2c2c3d
[Doc] Add Pseudo Code for HeteroGraphConv ( #2729 )
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* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-8.us-west-2.compute.internal >
2021-03-17 20:00:15 +08:00
b34a1e63d4
Update subgraph.py ( #2754 )
2021-03-17 18:15:30 +08:00
93074dd358
Bug fix for RGCN Link Prediction Example Exceeding Specified Epochs ( #2757 )
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* Address bug where epochs exceed specified limit
* fix spacing
2021-03-17 14:29:45 +08:00
d3a058226c
[Doc] Add one paper
2021-03-15 14:10:35 +08:00
99c6846a3c
[Doc] Add four papers to Awesome DGL papers list ( #2751 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Hide implementations that may cause confusions to the user
* fix number of classes in Amazon Cobuy datasets
* add four papers
2021-03-14 22:21:20 +08:00
3c8382f6b6
Fix typos in zero-in-degree ( #2750 )
2021-03-14 19:13:59 +08:00
63d94f611b
[Papers] 4 New Papers Using DGL ( #2743 )
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* Update README.md
* Update README.md
2021-03-12 16:33:58 +08:00
Quan Gan