182041803b
bump version
2020-08-21 12:39:14 +08:00
ad8530a4dc
[Readme] 0.5.0 release and bump to new prerelease versions ( #2082 )
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* [Readme] 0.5.0 release and bump to new prerelease versions
* bump version
2020-08-21 12:29:17 +08:00
f13b9b6212
[Doc] Scan the API docs and make many changes ( #2080 )
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* WIP: api
* dgl.sampling, dgl.data
* dgl.sampling; dgl.dataloading
* sampling packages
* convert
* subgraph
* deprecate
* subgraph APIs
* All docstrings for convert/subgraph/transform
* almost all funcs under dgl namespace
* WIP: DGLGraph
* done graph query
* message passing functions
* lint
* fix merge error
* fix test
* lint
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-20 23:26:49 +08:00
35e25914ad
Update version check of PyTorch to 1.5 ( #2079 )
2020-08-20 21:33:29 +08:00
debfd4bf78
Graph chapter, user guide ( #2078 )
2020-08-20 21:08:40 +08:00
ef78d675e9
Fix docs ( #2073 )
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* remove mxnet tutorial
* remove sse
* fix docs
2020-08-20 15:37:50 +08:00
28deee4d47
[Model] fix PinSAGE example for 0.5 release ( #2072 )
2020-08-20 12:51:44 +08:00
dba8c82571
Fix ( #2070 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-20 10:25:20 +08:00
8f3e423c74
update Readme ( #2068 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal >
2020-08-19 23:04:19 +08:00
ef976be1e9
[Bug][Doc] Fix NodeDataLoader docstrings and code ( #2063 )
2020-08-19 21:59:02 +08:00
2b77ad41e1
[Example] Fix GCMC ( #2067 )
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* Fix
* Update data.py
* Update README.md
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 20:58:57 +08:00
83654fdc4e
fix tu dataset ( #2064 )
2020-08-19 18:25:56 +08:00
100d932865
Update ( #2062 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 17:42:48 +08:00
a260a6e615
[Example] Fix GATNE-T ( #2061 )
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* Update README.md
* Update
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 17:01:56 +08:00
3af0e91c0e
[Frame] Fix for Column Index Device ( #2055 )
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* Update frame.py
* add unit test
* fix test
* fix
* fix
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-19 16:10:52 +08:00
4c5136c8f8
deprecated some mxnet example ( #2054 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-19 15:50:57 +08:00
167536db71
[Windows] Work around the bug from CL 19.10 ( #2059 )
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* [Windows] Work around the bug from CL 19.10
* fix
2020-08-19 15:24:46 +08:00
a4a7e02f5f
[BugFix] Fix a small bug on kvstore ( #2058 )
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* small fix
* update
2020-08-19 14:57:45 +08:00
6e8f760518
Update ( #2057 )
2020-08-19 14:24:39 +08:00
75e89a153f
remove debug information ( #2056 )
2020-08-19 13:19:41 +08:00
9da1629c9d
[Distributed] Some small fixes on doc ( #2049 )
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* quick fix.
* update sparse optimizer.
* fix.
* fix
2020-08-18 21:13:19 -07:00
4edde000a4
Fix tree lstm ( #2052 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal >
2020-08-19 10:44:10 +08:00
c8a44c7882
Update README.md ( #1367 )
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updating readme to reflect argparse args
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-19 09:23:11 +08:00
f3f35098e6
Fix ( #2051 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal >
2020-08-19 08:45:29 +08:00
0052f1212b
[Example] Rgcn distributed training ( #1999 )
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* add entity_classify_dist
* upd
* update
* Fix
* Fix
* upd
* upd
* upd
* upd
* global eval
* Fix
* Fix
* Fix
* Fix
* FIx
* upd
* upd
* update
* support pytorch sparse embedding
* Fix
* Fix
* update Readme
* update with new API
* Fix
* update Readme
* add fanout for validation neighbor sampling
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal >
Co-authored-by: Chao Ma <mctt90@gmail.com >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2020-08-18 12:12:21 -07:00
75ffc31f76
[Doc] Update the docstring of distributed APIs. ( #2025 )
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* add doc.
* update DistGraph.
* add DistTensor.
* update DistEmbedding.
* add partition.py
* add sampling.
* fix.
* add graph partition book and create a base class.
* fix test.
* add rst.
* update doc rst.
* update.
* fix.
* fix docs
* update distributed tensor and embeddings.
* add checks.
* update DistGraph.
* update initialization.
* fix graph partition book.
* update graph partition book.
* update partition.
* update partition.
* fix.
* add example code.
* update DistGraph
* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
* update initialize.
* update dataloader.
* update distgraph.
* update DistGraph.
* update DistTensor.
* update.
* more updates.
* fix lint.
* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-18 11:53:45 -07:00
3d65484323
Fix mxnet gin ( #2048 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-19 00:05:15 +08:00
65866989c0
[NN] [Doc] Fix nn api doc ( #2047 )
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* fix mxnet nn doc and no note on chebconv
* change notes to note to highlight
2020-08-18 23:47:16 +08:00
dacc7afeb2
[Convert] Reserve node/edge IDs in to_heterogeneous ( #2045 )
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* Fix
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-18 23:16:33 +08:00
9088c63592
[Feature] Change the Default Value of transpose in DGLGraph.adj ( #2046 )
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* Update adj
* Fix
2020-08-18 22:45:46 +08:00
edfbee2ca8
[Feature] Make sample_neighbors copy features on demand ( #2042 )
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* fix
* fix
* lint
* fix
* test
* fix
* fix
2020-08-18 22:25:19 +08:00
09ec6020ac
[Example] rm gcn spmv ( #2044 )
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* rm gcn spmv
* remove useless test
* remove useless test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-18 17:48:38 +08:00
6d34628101
upd ( #2043 )
2020-08-18 17:15:31 +08:00
1a1f38e3fe
remove kvstore example which is not maintianed and is out of date ( #2041 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-18 15:09:21 +08:00
6367318f45
[Model] use dask to parallelize preprocessing ( #2040 )
2020-08-18 12:12:50 +08:00
47c96dd114
[Test] Remove Test for metapath_random_walk ( #2039 )
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* Update test_randomwalk.py
* Update test_randomwalk.py
2020-08-18 11:19:31 +08:00
aa19df1bbb
[Bugfix] Fix batching isolated node types ( #2035 )
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* [Bugfix] Fix batching isolated ntypes
* fix test
* remove test.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-18 09:29:05 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
0afc3cf8e1
[NN] Add ChebConv for Tensorflow ( #2038 )
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* add chebconv
* fix
* lint
* fix lint
* docs
2020-08-17 22:12:27 +08:00
b35388020d
[Bugfix] fix vocab not saved bug in SSTDataset ( #2036 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update tree.py
2020-08-17 21:59:14 +08:00
5cb5759366
[Doc] split docs to multiple rst files ( #2037 )
2020-08-17 19:02:31 +08:00
a8b27b475c
disable batching blocks ( #2034 )
2020-08-17 16:45:57 +08:00
a9c4df67b9
[Doc] Move image in dataset User guide to s3 server ( #2033 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* data pipeline user guide
* remove chapter numbers
* Update data.rst
* image in dataset userguide
* update links using ref
* modify the link of save_graphs and load_graphs in dataset user guide
* move image to s3 server.
2020-08-17 15:33:41 +08:00
b1e69105d4
[Doc] API Doc update for mxnet and tf, remove some degree check ( #2028 )
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* mx tf relconv
* use method instead of private attr
* src and dst have different fc for gat
* update edgeconv
* change sage and sgconv
* no degree check on gin
* add remainding API doc
* fix pylint
* infer fc_src and fc_dst, only one tensor for block
* fix pytest
2020-08-17 13:23:44 +08:00
4f1da61b58
[Doc] fix inconsistencies in minibatch user guide ( #2032 )
2020-08-17 12:43:43 +08:00
e291f503f2
[Fix] Update libinfo.py ( #1830 )
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* Update libinfo.py
fix `if search_path is list` error, and improve the code.
* change string format for compatibility with py35
change string format
* Update libinfo.py
* Update libinfo.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-08-17 10:52:11 +08:00
b8a4b446e5
[NN][Fix] fix some random test ( #2031 )
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-08-17 10:19:31 +08:00
1f7b219594
[Doc] User guide section 5 and 6 ( #2029 )
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* [Doc] User guide section 5 and 6
* oops
* fix
2020-08-17 09:47:01 +08:00
2fc280ba65
only filling zeros for min/max reducer ( #2026 )
2020-08-15 12:43:36 +08:00
62e69b67aa
[Doc] Modify the link of save_graphs and load_graphs in dataset user guide ( #2027 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* data pipeline user guide
* remove chapter numbers
* Update data.rst
* image in dataset userguide
* update links using ref
* modify the link of save_graphs and load_graphs in dataset user guide
2020-08-15 09:21:08 +08:00
Quan Gan