bf3994eea6
[Model][Hotfix] DiffPool formatting fix ( #696 )
...
* formatting
* formatting
2019-07-02 15:19:57 +08:00
684a61ad09
[Model] DiffPool with both DGL and tensorized operatons ( #665 )
...
* diffpool original file added
* make diffpool fuse up and running
* minor tweak on tu dataset statistics method
* fix tu
* break
* delete break
* pre_org
* diffpool fuse reorg
* fix random shuffling
* fix bn
* add dgl layers
* early stopping
* add readme
* fix
* add diffpool preprocess script
* tweak tu dataset
* tweak
* tweak
* tweak
* tweak
* tweak
* preprocess dataset
* fix early stopping
* fix
* fix
* fix
* tweak
* readme
* code review
* code review
* dataset code review
* update README
* code review
* tu doc
2019-07-01 20:00:15 +08:00
dec8b49b5d
[Examples] Run all the examples ( #623 )
...
* all pytorch examples
* scan through mxnet examples
* change reddit data
* tweak numerical range for unittest
* fix ci
* fix ci
* fix
* add seed to workaround
2019-06-09 00:26:13 -04:00
306bb3f9ad
[Bugfix] Fix minigc ( #585 )
2019-05-29 21:59:03 -04:00
8c79885d8b
[BUGFIX] fix the error message in the data loader. ( #509 )
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* fix.
* Change to required=True
* Update description
* Change back
2019-04-26 09:52:45 +09:00
ad9da36add
[Model] Add DGI Model ( #501 )
2019-04-22 11:37:06 +08:00
a3febc061b
[Model] Add GIN Model ( #471 )
...
* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
c69dbbb736
[Bug Fix] Fix TUDataset Processing bug ( #489 )
...
* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
* Fix processing bug
2019-04-11 19:30:50 +08:00
00fc680aae
[Dataset] Add TUDataset ( #473 )
...
* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
c07ae34a99
[Bugfix] removing non-determinism in data loading ( #413 )
...
[Bugfix] Removing non-determinism in data loading
2019-02-26 01:24:48 -05:00
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
...
* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
51293a3273
[Data] reddit data loader ( #372 )
...
* reddit data loader
* upload to S3
* update
* add self loop
* address comments
* fi
2019-02-08 10:53:39 -08:00
3cbfc25a32
[Tutorial] Batched Graph Classification ( #360 )
...
* batched_graph_classification
* Fix
* Fix
* update tutorial with new dataset
* Final
* Fix doc for dataset
* small fix
2019-01-25 15:13:52 -05:00
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
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* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
37feb479fd
[Release] 0.1.2 updates ( #276 )
...
* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
2018-12-07 01:54:13 -05:00
1bbc885b40
move batcher to examples. ( #269 )
...
* move pytorch code to examples.
* fix.
* fix tutorial
2018-12-06 06:45:27 -08:00
378c264561
[Model] Fix GCN Normalization ( #249 )
...
* WIP
* lr -> 0.01
* new cora dataset
* normalization code
* minor format change
* normalization factor for deg bucket
2018-12-05 12:32:10 -05:00
21255b6528
[Bugfix] tolist and dependencies in dgl.data ( #239 )
...
* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data
* fix import
* fix __all__ and some docstring
2018-12-05 12:20:59 -05:00
b1e8d95e99
[Doc] LGNN tutorial ( #210 )
...
* tutorial notebook added
* lg tutorial cleaned up
* dataset scaffold
* move dataloader to data
* fix model
* remove todo
* utils seperated
* [model]line graph new implementation + tutorial + binary sub graph dataset
* [tutorial] line graph sphinx scaffold
* [tutorial] lgnn tutorial improved
* [tutorial] remove notebook
* [tutorial] fix lg and gcn links
* [tutorial] fix random seed
* [tutorial]fix
* WIP
* code refactor done
* new mini dataset; remove utils code
* fix
* word fix
* fix link
* minor fix
* minor fix
* minor fix
2018-12-03 17:59:50 -05:00
5278220f85
update s3 links ( #215 )
2018-12-02 20:48:29 +08:00
cccc2339c1
[Dataset] update s3 links ( #209 )
2018-12-01 14:45:30 -05:00
91141a9826
[Dataset] Move file from dropbox to s3 (and fix ci fail due to sst dataset) ( #205 )
...
* move file from dropbox to s3
* fix ci and move sst to s3
* remove blank line
2018-11-30 19:44:55 -05:00
c80dc5e012
[model] Tree-LSTM update & hotfix(dropbox link) ( #202 )
...
* change the signature of node/edge filter
* upd filter
* Support multi-dimension node feature in SPMV
* stable version
* hotfix
* upd tutorial
* upd README
2018-11-30 19:39:49 -05:00
3a0f86a663
[Doc] data ( #198 )
...
* Fix dataset
* Track data APIs
2018-11-30 11:40:22 -05:00
5cda368d79
[Model] SBM hotfix ( #137 )
...
* [Model]SBM hotfix
* [Model] remove backend in data
2018-11-27 11:58:03 -05:00
2389df8155
[API] Subgraph sampling API. ( #138 )
...
* add neighbor sampler.
* fix sampler.
* handle non-existing nodes differently in MapParentIdToSubgraphId.
* fix sampling tests.
* parallelize sampling.
* add more tests.
* fix a bug in subgraph loader.
* get number of sampled nodes directly.
* load mxnet CSR to DGLGraph directly.
* create graph from mxnet csr array directly.
* use subgraph loader in SSE.
* fix a bug in sampling.
* output framework tensor.
* fix.
* remove unnecessary code.
* fix tests.
* add SSE README.
* move to contrib.
* address comments.
* add tests.
2018-11-14 13:51:27 -08:00
a9ffb59e66
[DOC][Model] Tree-LSTM example and tutorial ( #146 )
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[DOC][Model] Tree-LSTM example and tutorial
2018-11-13 18:09:14 -05:00
6d96a97f17
[Doc] docstring for SST dataset ( #133 )
2018-11-10 11:59:55 -05:00
7241a9c008
[Backend] backend interface ( #109 )
...
* backend interface
* small fix
* more comments to the data type dict
* WIP
* convert_to and narrow
* WIP
* pytorch and numpy backend; WIP on mxnet backend
* mxnet backend
* narrow
* Fix all usages
* fix for mx
* fix for mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* revert jenkins
* add sparse_matrix api
* sparse matrix api
* some fixme
* Fix as requested
2018-11-04 21:42:39 -05:00
b420a5b5b3
[Model] Fix broken CDGNN example ( #111 )
...
* pretty printer
* Conflicts:
python/dgl/data/sbm.py
* refined line_graph implementation
* fix broken api calls
* small fix to trigger CI
* requested change
2018-11-05 07:14:01 +08:00
ff92812609
remove pytorch dependency in sbm.py ( #107 )
2018-10-25 20:22:41 -04:00
fb6be9fbd7
[GraphIndex] Create graph index directly from scipy matrix. ( #87 )
...
* create synthetic data with scipy.
* changes as comments
2018-10-18 16:39:45 -04:00
6cbdf37c37
Merge branch 'master' into cpp
2018-10-18 15:29:20 -04:00
e7679cf2e6
implement requested changes
2018-10-13 14:24:46 +08:00
0a6d720c30
fix build failure
2018-10-10 12:43:05 +08:00
ec4216dda8
[MODEL] junction tree vae example ( #70 )
...
* junction tree vae example
* added README and moved data to dropbox
* auto download; some fix in python3
2018-10-06 16:59:47 -04:00
596ca471a5
Merge branch 'cpp' of https://github.com/jermainewang/dgl into line-graph
2018-10-06 23:52:04 +08:00
c468e06867
some fix
2018-10-05 10:38:44 -04:00
cc372e3774
sbm mixture
2018-10-04 21:22:41 +08:00
882e2a7be0
Graph batching. Support convert nx graph attrs
2018-09-24 21:34:51 -04:00
79f62400fe
WIP: batch graphs
2018-09-21 14:53:25 -04:00
b24daa6607
change to rel import within dgl
2018-09-16 16:14:37 -04:00
61fa3c6cf5
Builtin function and API changes ( #53 )
...
* WIP: API renaming
* API rewrite and node function refactor
* builtin functions
* builtin functions tested
* fix test
* send and recv spmv test
* WIP: fix examples
* Fix examples using new APIs
2018-09-01 13:38:01 -04:00
b7eb16595f
Fix 0deg update_to and Tree-LSTM model ( #51 )
...
* WIP
* WIP
* treelstm dataloader
* Main training loop.
* trainable treelstm script
* fix dependency
* cuda training
* Add tensorized topological traversal
* allowing update_to() with no incoming messages
* fixing partial cases
2018-08-28 11:57:08 -04:00
0a78dbe12a
Three DGL-GCN implementations ( #35 )
...
* synthetic dataset
* some fix
* gcn readme
2018-08-07 15:26:58 -04:00
2c489fadec
SPMV specialization ( #32 )
...
* fix edge list order problem in cached graph.
* minor fix
* fix bug in edge iter
* SPMV works
* gcn spmv on CPU
* change gcn style
* fix cached graph performance; fixed gcn dataset bug
* reorg dir
* non-batch spmv; partial update problem with shape change
* fix reorder problem; finish gcn-batch impl
* pop API
* GPU context
2018-08-06 14:00:06 -04:00
HQ