9a9a06eb2f
[Bug Fix] Fix undefined var bug in LegacyTUDataset ( #2543 )
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* [Bug Fix] Fix undefined var bug in LegacyTUDataset
* upt
* [Bug Fix] Fix cache file name bug in TUDataset
Co-authored-by: Tong He <hetong007@gmail.com >
2021-01-19 13:58:01 +08:00
21e90cbf48
[Doc] Fix number of classes in Amazon Cobuy datasets ( #2488 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update gnn_benckmark.py
* Hide implementations that may cause confusions to the user
* fix number of classes in Amazon Cobuy datasets
2021-01-05 13:08:05 +08:00
4464b9734c
Fix kg dataset len() ( #2475 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal >
2020-12-31 23:33:21 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
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* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
9d7bf4ea89
Fix citation data loading ( #2421 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-57-25.ec2.internal >
2020-12-14 14:58:01 +08:00
fcf1193579
[Doc] Hidden implementations that may cause confusion to the user. ( #2378 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* data pipeline user guide
* remove chapter numbers
* Update data.rst
* image in dataset userguide
* update links using ref
* modify the link of save_graphs and load_graphs in dataset user guide
* move image to s3 server.
* fix links and ref
* Hide implementations that may cause confusions to the user
2020-12-03 13:09:19 +08:00
fe4ada23f9
Update knowledge_graph.py ( #2329 )
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The l in "bool" is lost.
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-11-10 17:33:55 +08:00
5f19876358
[Bugfix] GINDataset check whether labels are all valid ( #2319 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* check whether the original labels are valid
* add unit test for gin dataset
* bug of asscalar in mxnet<=1.6
* mxnet<=1.6 asscalar requires ndarray to be shaped (1,)
* skip gpu while testing datasets
* Update test_data.py
* test of gin dataset takes too much time
2020-11-05 09:35:10 +08:00
269983dbcd
[Fix] typo ( #2265 )
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* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
8bbc84e04f
[bugfix] Fix crash due to unfound attribute ( #2262 )
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An unexpected `AttributeError` exception is launched whenever the user defines `save_dir` on `DGLDataset` instantiation and uses `self._save_dir` within `has_cache` method.
This commit fixes the issue.
2020-10-09 09:44:38 +08:00
0b00562d1f
Update gindt.py ( #2212 )
2020-09-18 19:49:50 +08:00
3234189b60
Fix hdfs error when writing big data ( #2186 )
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* update dmlc-core to latest
* fix hdfs
2020-09-12 23:58:36 +08:00
8a227bfa03
[Bugfix] fix TUDataset labelling issue ( #2165 ) ( #2173 )
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* [Bugfix] fix TUDataset labelling issue (#2165 )
* [Bugfix] fix TUDataset labelling issue (dmlc#2165)
* update docstring according to discussion
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-09-11 17:05:24 +08:00
a102db23bf
[Dataset] CoraFull dataset remove redundant reference ( #2172 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update gnn_benckmark.py
2020-09-11 15:15:06 +08:00
0cf99be378
hotfix ( #2163 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2020-09-09 11:00:31 +08:00
c9c6171b9f
Revert "[Feature] Basic utils to handle raw data features ( #2102 )" ( #2147 )
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This reverts commit 33a8bb93bfwmjlyjemaine@gmail.com >
2020-09-08 10:33:59 +08:00
33a8bb93bf
[Feature] Basic utils to handle raw data features ( #2102 )
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* add feature utils and add test for feature norm
* Add docstring and test
* upd
* dis able some test
* Update
* update doc string
* update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-08-27 11:36:39 +08:00
51ba662169
Fix GINDT and #2087 ( #2103 )
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* fix gindt
* ff
* fix
* minor fix
* fix
2020-08-26 15:53:45 +08:00
f13b9b6212
[Doc] Scan the API docs and make many changes ( #2080 )
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* WIP: api
* dgl.sampling, dgl.data
* dgl.sampling; dgl.dataloading
* sampling packages
* convert
* subgraph
* deprecate
* subgraph APIs
* All docstrings for convert/subgraph/transform
* almost all funcs under dgl namespace
* WIP: DGLGraph
* done graph query
* message passing functions
* lint
* fix merge error
* fix test
* lint
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-20 23:26:49 +08:00
83654fdc4e
fix tu dataset ( #2064 )
2020-08-19 18:25:56 +08:00
4edde000a4
Fix tree lstm ( #2052 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal >
2020-08-19 10:44:10 +08:00
3d65484323
Fix mxnet gin ( #2048 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-19 00:05:15 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
b35388020d
[Bugfix] fix vocab not saved bug in SSTDataset ( #2036 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update tree.py
2020-08-17 21:59:14 +08:00
c113a5a0d7
Update dgl_dataset.py ( #2021 )
2020-08-14 16:17:37 +08:00
5362908236
Fix save/load for old version files ( #1994 )
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* load hetero
* fix
* more error message
* add warning
* add alias to dgl namespace
* fix tests
2020-08-12 23:45:21 +08:00
e4b4fcffc2
hotfix ( #1987 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-10 22:06:25 +08:00
e75157738b
hotfix ( #1980 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal >
2020-08-09 11:25:13 +08:00
264d96cdf5
[bugfix] Fix a bunch of examples to be compatible with dgl 0.5 ( #1957 )
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* upd
* upd
* upd
* upd
* upd
* upd
* fix pinsage also
* upd
* upd
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-08 01:31:23 +08:00
22167f7203
[Refactor] Enable new kernel in all message passing APIs ( #1953 )
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* WIP: frame refactor
* new frame
* simple update_all builtin
* move all subgraph routines into the same file
* sddmm & spmm schedule; node & edge udf
* degree bucketing
* some tricky 0deg corner cases
* bug in frame append
* merge test_hetero_basics and test_basics
* some code rearange
* fix test_heterograph
* add mean spmm
* enable all builtin combinations
* pass gpu test
* pass pytorch tests
* wip
* fix some pt debugging codes
* fix bug in mxnet backward
* pass all mxnet utests
* passed tf tests
* docstring
* lint
* lint
* fix broadcasting bugs
* add warning and clamp for mean reducer
* add test for zero-degree mean
* address comments
* lint
* small fix
2020-08-07 15:40:25 +08:00
5d5436ba18
[Dataset] RedditDataset change data.train_mask to numpy array ( #1961 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-07 15:22:13 +08:00
78651016f4
[Hot fix][Dataset] knowledge graph dataset statistics output ( #1952 )
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* Hot fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-06 20:20:20 +08:00
13ea9ddb06
[Doc] Fix some format issues in dataset api doc ( #1951 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* update doc
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-06 16:51:46 +08:00
967ecb8064
[Dataset] Fix the docstring format for dgl.data section ( #1941 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* update data rst
* update data doc and docstring
* API doc rst for dataset
* docstring
* update api doc
* add url format
* update docstring
* update citation graph
* update knowledge graph
* update gc datasets
* fix index
* Rst fix (#3 )
* Fix syntax
* syntax
* update docstring
* update doc (#4 )
* final update
* fix rdflib
* fix rdf
Co-authored-by: HuXiangkun <huxk_hit@qq.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-06 14:47:49 +08:00
451ed6d836
[Dataset] SBMMixtureDataset ( #1920 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SBMMixture dataset
* Update sbm.py
* fix example
* Update sbm.py
* Revert "Update sbm.py"
This reverts commit 066db5c89bd5e159981ae7cad1bfb883ea5db71d.
* Update sbm.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-04 15:06:53 +08:00
2c141229d5
[Dataset] RedditDataset ( #1914 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* RedditDataset
* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 23:49:22 +08:00
37aa99c510
[Dataset] GNNBenchmarkDataset ( #1912 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gnn benchmark dataset
* Update gnn_benckmark.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 23:28:58 +08:00
001d793711
[Dataset] SSTDataset ( #1918 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
2020-08-03 19:15:28 +08:00
73b9c6f18c
[Dataset] GDELTDataset ( #1911 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gdelt dataset
* Update gdelt.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 17:43:50 +08:00
06ea03d0f8
[Dataset] ICEWS18Dataset ( #1913 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* ICEWS18Dataset
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 17:07:02 +08:00
b5be4f4bbf
[Dataset] Update dataset hash with deterministic function ( #1919 )
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* update hash with deterministic function
* update docstring
* add test on determination
2020-08-03 16:17:00 +08:00
39ed096630
[Dataset] Builtin LegacyTUDataset and TUDataset ( #1891 )
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* add LegacyTUDataset and TUDataset
* update docstrings and url
* update docstrings
* add hash to fix save/load
* update docstring and use hash
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 14:40:36 +08:00
22485e58d3
[Dataset] BitcoinOTCDataset ( #1910 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* bitcoinotc dataset
* Update bitcoinotc.py
2020-08-03 12:15:04 +08:00
d22f96feb4
[Dataset] QM7bDataset ( #1915 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* QM7bDataset
* Update qm7b.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 11:58:31 +08:00
9bcce7bead
[Dataset] PPIDataset ( #1906 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Revert "Revert "PPIDataset""
This reverts commit 6938a4cbe3ac6e38d3e0188b5699e5c952a6102e.
* update doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 00:30:01 +08:00
743c38401c
[Dataset] KarateClubDataset ( #1897 )
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* karateclub dataset
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update karate.py
* doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-02 22:39:11 +08:00
cb2c4ec17b
Fix ( #1909 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-02 14:53:21 +08:00
303e42367d
Hot Fix docstring ( #1907 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-01 23:24:24 +08:00
b347590a37
[Dataset] Citation graph ( #1902 )
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* citation graph
* GCN example use new citatoin dataset
* mxnet gat
* triger
* Fix
* Fix gat
* fix
* Fix tensorflow dgi
* Fix appnp, graphsage for mxnet
* fix monet and sgc for mxnet
* Fix tagcn
* update sgc, appnp
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-01 19:25:50 +08:00
18c960a1b5
[Dataset] Builtin MiniGCDataset ( #1890 )
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* add minigc
* fix
* update docstrings
* update docstring
* add hash to fix save/load
* update hash
2020-07-31 17:40:02 +08:00
张天启