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Mufei Li 1cb210c832 Update index.rst (#2254) 2020-10-01 21:35:57 +08:00
zhjwy9343 808a3676c2 [Doc] Chinese User Guide chapter1 (#2240) 
* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* Update README.md

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Fix] Temporary remove compgcn

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* update hash in 3rd party

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* Update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-09-30 18:16:10 +08:00
Zihao Ye c341520d5b [bugfix] Fix the behavior of min/max reducer for 1-dim dta. (#2250) 
* udp

* add test

* udp

* fix mxnet
 2020-09-29 17:27:16 +08:00
Mufei Li ee9093f599 Update message-efficient.rst (#2247) 2020-09-27 23:41:12 +08:00
Mufei Li 8ad7c3e880 Update README.md (#2213) 2020-09-27 15:08:13 +08:00
Quan (Andy) Gan 6bc92068dd [Doc] fix minibatch user guide broken code (#2233) 2020-09-27 11:28:34 +08:00
Junki Ishikawa 6b0d42db15 Fix typo (#2235) 
Co-authored-by: Chao Ma <mctt90@gmail.com>
 2020-09-25 16:40:22 +08:00
Chao Ma 36daf66f62 update (#2236) 2020-09-25 14:48:46 +08:00
Mingjian Wen 25a8e3f181 Fix segment_reduce() ignoring tailing 0 segments (#2228) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-09-24 15:07:45 +08:00
Mufei Li 40caf1ab50 [HeteroGraph] Fix the failure of apply_nodes when the input function changes feature size for all nodes (#2223) 
* Fix

* Fix
 2020-09-24 08:54:28 +08:00
Mufei Li 7e0107c395 Update (#2225) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-53.us-west-2.compute.internal>
 2020-09-23 15:37:47 +08:00
Mufei Li 7a6d66682f Update dgl.data.rst (#2217) 2020-09-21 10:15:24 +08:00
Hao Xiong eef4c05929 [Example] Implement LINE with dgl and pytorch (#2195) 
* line

* two lines

* update readme

* readme

* update readme

* update

* Implement LINE

* readme

* readme

* typos

* update readme

Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-09-21 02:30:34 +08:00
zhjwy9343 90d86fcbe3 Master refactor split chapter2n3 (#2215) 
* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Refactor and split chapter 4

* [Fix] Remove CompGCN example codes

* [Doc] Add chapter 2 refactor and split

* [Fix] code format of savenload

* [Doc] Split chapter 3

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 3

* Fix

* Update chapter 2

* Update chapter 3

* Update chapter 4

Co-authored-by: mufeili <mufeili1996@gmail.com>
 2020-09-20 17:45:35 +08:00
Quan (Andy) Gan 49e96970e2 [Doc] fix typos in PyTorch DataLoaders (#2216) 
* fix doc

* fix doc
 2020-09-20 13:21:05 +08:00
Mufei Li 0b00562d1f Update gindt.py (#2212) 2020-09-18 19:49:50 +08:00
espylapiza 47bb05939d [Example] GAT on ogbn-arxiv (#2210) 
* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-18 11:45:13 +08:00
Quan (Andy) Gan 2fbffd3122 [bug][doc] Fix bug in batched heterograph training documentation (#2204) 
* [bug][doc] Fix bug in batched heterograph training documentation

* added references of "above" with hyperlinks

* address comments

* fix API doc on EdgeDataLoader

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-09-17 12:00:13 +08:00
Mufei Li f3f646bbfd [Doc and User Guide] Minor Fix (#2205) 
* Fix doc and user guide

* Update heterograph.py

Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>
 2020-09-17 03:01:12 +08:00
Chao Ma 39260242a2 [Distributed Example] Check args.num_servers with DGL_NUM_SERVER (#2203) 
* update

* update

* update
 2020-09-16 14:31:47 +08:00
Zihao Ye b25bbe642e Loop reorder (#2201) 2020-09-15 20:10:43 +08:00
Tianjun Xiao 233e8198d3 [Doc]fix link in message passing doc (#2200) 
* fix link in message passing doc

* more specific link
 2020-09-15 16:52:26 +08:00
Chao Ma c53bf77452 [Distributed Example] Add --close_profiler option to train_dist.py (#2199) 
* update

* update
 2020-09-15 14:37:28 +08:00
Qidong Su 0ced22c237 fix (#2142) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-10-127.us-west-2.compute.internal>
Co-authored-by: Chao Ma <mctt90@gmail.com>
 2020-09-15 14:19:16 +08:00
Chao Ma 67e520c4a0 [Distributed] Change rsync to scp of copy_files.py (#2197) 
* update

* update
 2020-09-15 13:43:17 +08:00
Hao Xiong 9488bace20 [Fix] fix some typos in example/ogb/deepwalk/ (#2190) 
* line

* two lines

* update readme

* readme

* update readme

* update

Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-09-15 11:01:44 +08:00
Chao Ma 1b2658b926 update (#2192) 2020-09-14 15:35:39 +08:00
Chao Ma 1aa25cb618 update (#2191) 2020-09-14 15:13:39 +08:00
Quan (Andy) Gan 76d66fd35d [Bug] Fix dtype mismatch in EdgeDataLoader on Windows (#2188) 
* fix node and edge dataloader on windows

* fix distributed
 2020-09-13 18:25:05 +08:00
xiang song(charlie.song) 782527d481 Fix partition for 0.5.1 (#2187) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
 2020-09-13 16:25:51 +08:00
Mufei Li 877101a96b [Doc] Update Doc for UDFs (#2131) 
* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-09-13 04:57:06 +08:00
Quan (Andy) Gan 5e9d288951 fix typo (#2185) 
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-13 01:50:54 +08:00
Jinjing Zhou 3234189b60 Fix hdfs error when writing big data (#2186) 
* update dmlc-core to latest

* fix hdfs
 2020-09-12 23:58:36 +08:00
Leo 55f3e92631 [Fix] use DistDataLoader instead of Pytorch’s DataLoader. (#2182) 
Co-authored-by: hzliuchw <hzliuchw@corp.netease.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-09-12 20:08:39 +08:00
Jinjing Zhou 0afacfb873 Fix create_format_ to create_formats (#2184) 
* Update dgl.DGLGraph.rst

* Update gcn.py
 2020-09-12 14:44:30 +08:00
Quan (Andy) Gan 4dae26a1fc [Doc] Fix typo in dataloading.negative_sampler (#2177) 
* fix dataloading docs

* fix another
 2020-09-11 19:39:48 +08:00
Quan (Andy) Gan 7d8522a29f [Bug] fix cumsum on an empty array with prepend_zero returning an empty array (#2179) 
* fix cumsum

* udp

Co-authored-by: Zihao <expye@outlook.com>
 2020-09-11 18:23:44 +08:00
Henry Kenlay 8a227bfa03 [Bugfix] fix TUDataset labelling issue (#2165) (#2173) 
* [Bugfix] fix TUDataset labelling issue (#2165)

* [Bugfix] fix TUDataset labelling issue (dmlc#2165)

* update docstring according to discussion

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-09-11 17:05:24 +08:00
Xiangkun Hu a102db23bf [Dataset] CoraFull dataset remove redundant reference (#2172) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update gnn_benckmark.py
 2020-09-11 15:15:06 +08:00
Quan (Andy) Gan 8f4594074b [Hotfix] Fix degree bucket edge ordering (#2176) 
* fix degree bucket edge ordering

* unit test

* fix
 2020-09-11 14:16:52 +08:00
Zihao Ye cbd55eb12f [performance] Batch DGLGraph in C++ end. (#2155) 
* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* fix

* upd

Co-authored-by: VoVAllen <jz1749@nyu.edu>
 2020-09-11 02:54:27 +08:00
Quan (Andy) Gan ac570c1dae [Bugfix] Fix flatten not wrapping unit graph (#2170) 
* fix flatten not wrapping unit graph

* fix doc
 2020-09-10 17:41:52 +08:00
Zihao Ye 2c04ecb55a [hotfix] Skip CUDA kernel launch when number of blocks/threads is zero. (#2144) 
* upd

* upd

* upd

* upd

* lint

* upd

* upd

* fmt

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-09-10 16:05:43 +08:00
Quan (Andy) Gan 5f44a4efce Fix #1453 again (#2169) 
* Fix reincarnation of #1453

* fix
 2020-09-10 15:43:21 +08:00
Quan (Andy) Gan 567c5acf4e [Feature?] BUG_ON macro and sanity check of FindEdges (#2168) 
* Sanity check for FindEdges

* [Feature?] BUG_ON() macro for sanity check
 2020-09-10 15:28:12 +08:00
Quan (Andy) Gan b10b541c11 fix multiple docstring inconsistencies (#2167) 2020-09-10 11:03:34 +08:00
Zihao Ye 45b610c49a fix edge_softmax (#2160) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-09-09 14:19:43 +08:00
xiang song(charlie.song) 0cf99be378 hotfix (#2163) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>
 2020-09-09 11:00:31 +08:00
Minjie Wang 101dc0dede New bibtex for citation 2020-09-08 15:31:35 +08:00
xiang song(charlie.song) c9c6171b9f Revert "[Feature] Basic utils to handle raw data features (#2102)" (#2147) 
This reverts commit 33a8bb93bf.

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-09-08 10:33:59 +08:00