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作者 SHA1 备注 提交日期
Mufei Li ed8a7beb42 Update README.txt 2020-07-17 23:29:55 +08:00
Mufei Li b55b7cb611 Update README.txt 2020-07-17 23:28:23 +08:00
Mufei Li 0ee95a5e73 Update (#1419) 2020-04-04 01:22:16 +08:00
Minjie Wang 2cdc4d3c1d [Doc] Patch tutorial (#1380) 
* patched 1_first

* done 2_basics

* done 4_batch

* done 1_gcn, 9_gat, 2_capsule

* 4_rgcn.py

* revert

* more fix
 2020-03-22 10:21:22 +08:00
Jinjing Zhou c23a61bd5c fix s3 link (#1310) 2020-03-04 21:01:29 +08:00
Mufei Li a199b58a6a Fix (#1195) 2020-01-12 02:47:29 +08:00
Da Zheng 48c7ec4427 [Doc] Fix gcn tutorial (#1080) 
* don't have activation.

* add evaluation.

* address comment.
 2019-12-10 02:10:51 -08:00
John Andrilla a2b8d8e4e7 [Doc] Giant graph tutorial edit for grammar and style (#1020) 
* Edit for readability

* giant_graph_readme edit for grammar

* NodeFlow and Sampling edit pass for grammar

* Update tutorials/models/1_gnn/9_gat.py

* Update tutorials/models/1_gnn/9_gat.py
 2019-11-30 12:31:59 +08:00
John Andrilla dd09f15fa7 [Doc] Stochastic steady-state embedding (SSE) Edit for readability 
Revisions for grammar and style
 2019-11-30 11:37:17 +08:00
John Andrilla 22d4de77a0 [Doc] 6_line_graph.py Edit pass (#1003) 
* Edit pass

Updates for grammar and readability

* Update tutorials/models/1_gnn/6_line_graph.py

* Update tutorials/models/1_gnn/6_line_graph.py

* Update tutorials/models/1_gnn/6_line_graph.py
 2019-11-29 13:53:43 +08:00
John Andrilla 287f387b8c Edit for readability (#1002) 
Grammar and style updates
 2019-11-29 10:53:11 +08:00
John Andrilla 8ae9770f9b [Doc] Graph neural network and its variant Edit for grammar and style (#992) 
* Edit for grammar and style

Improve readability

* Update tutorials/models/1_gnn/README.txt

Co-Authored-By: Aaron Markham <markhama@amazon.com>

* Update tutorials/models/1_gnn/README.txt

Co-Authored-By: Aaron Markham <markhama@amazon.com>
 2019-11-28 15:44:58 +08:00
xiang song(charlie.song) 82499e602b [Bug Fix] Fix package reliability bug of networkx (#949) 
* upd

* fig edgebatch edges

* add test

* trigger

* Update README.md for pytorch PinSage example.

Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.

* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.

1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
    test/pytorch/test_nn.py work on both CPU and GPU

* Fix style

* Delete unused code

* Make agnostic test only related to tests/backend

1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu

* Fix code style

* fix

* doc

* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.

* Fix syntex

* Remove rand

* Add TAGCN nn.module and example

* Now tagcn can run on CPU.

* Add unitest for TGConv

* Fix style

* For pubmed dataset, using --lr=0.005 can achieve better acc

* Fix style

* Fix some descriptions

* trigger

* Fix doc

* Add nn.TGConv and example

* Fix bug

* Update data in mxnet.tagcn test acc.

* Fix some comments and code

* delete useless code

* Fix namming

* Fix bug

* Fix bug

* Add test for mxnet TAGCov

* Add test code for mxnet TAGCov

* Update some docs

* Fix some code

* Update docs dgl.nn.mxnet

* Update weight init

* Fix

* reproduce the bug

* Fix concurrency bug reported at #755.
Also make test_shared_mem_store.py more deterministic.

* Update test_shared_mem_store.py

* Update dmlc/core

* networkx >= 2.4 will break our examples

* Update tutorials/requirements

* fix selfloop edges

* upd version
 2019-10-29 23:34:31 -04:00
Hao Zhang ca48787ae4 fix tutorial (#506) 
* Update 9_gat.py

* Update 1_gcn.py
 2019-04-23 15:30:59 +08:00
Quan (Andy) Gan 681e5217dd [Refactor] Sampler code refactor (#454) 
* refactored sampler code

* docstring

* fix tutorial
 2019-03-18 10:41:35 -04:00
Da Zheng bea07b41b3 [Sampler] fix the API of neighbor sampler. (#407) 
* don't return aux_info.

* fix sampler test.

* fix sse.

* fix.

* add comment.
 2019-02-28 13:45:21 -08:00
Mufei Li 3f891b64b7 [Tutorial] Fix gat tutorial (#420) 2019-02-28 11:10:14 -05:00
Hao Zhang 98ff82e527 [Doc] Tutorial for GAT (#400) 
* 9_gat.py

* readme

* Update 9_gat.py

* Update 9_gat.py

* fix format
 2019-02-20 22:50:55 -05:00
Da Zheng f370e628cd [Feature] add NodeFlow API (#361) 
* sample layer subgraphs.

* fix.

* fix.

* add layered subgraph.

* fix lint.

* fix.

* fix tutorial.

* fix.

* remove copy_to_parent.

* add num_layers

* move sampling code to sampler.cc

* fix.

* move subgraph construction out.

* Revert "move subgraph construction out."

This reverts commit 24b3d13b0d8ed5f91847ea75a7674ee8f7d45cff.

* change to NodeFlow.

* use NodeFlow in Python.

* use NodeFlowIndex.

* add node_mapping and edge_mapping.

* remove unnecessary code in SSE tutorial.

* Revert "remove unnecessary code in SSE tutorial."

This reverts commit 093f0413d5fa2e63ca5f80c46c80a126a9fb720c.

* fix tutorial.

* move to node_flow.

* update gcn cv updater.

* import NodeFlow.

* update.

* add demo code for vanilla control variate sampler.

* update.

* update.

* add neighbor sampling.

* return flow offsets.

* update node_flow.

* add test.

* fix sampler.

* fix graph index.

* fix a bug in sampler.

* fix map_to_layer_nid and map_to_flow_eid.

* fix apply_flow.

* remove model code.

* implement flow_compute.

* fix a bug.

* reverse the csr physically.

* add mini-batch test.

* add mini batch test.

* update flow_compute.

* add prop_flows

* run on specific nodes.

* test copy

* fix a bug in creating frame in NodeFlow.

* add init gcn_cv_updater.

* fix a minor bug.

* fix gcn_cv_updater.

* fix a bug.

* fix a bug in NodeFlow.

* use new h in gcn_cv_updater.

* add layer_in_degree and layer_out_degree.

* fix gcn_cv_updater for gpu.

* temp fix in NodeFlow for diff context.

* allow enabling/disabling copy back.

* add with-updater option.

* fix a bug in computing degree.

* add with-cv option.

* rename and add comments.

* fix lint complain.

* fix lint.

* avoid assert.

* remove assert.

* fix.

* fix.

* fix.

* fix.

* fix the methods in NodeFlow.

* fix lint.

* update SSE.

* remove gcn_cv_updater.

* correct comments for the schedulers.

* update comment.

* add map_to_nodeflow_nid

* address comment.

* remove duplicated test.

* fix int.

* fix comments.

* fix lint

* fix.

* replace subgraph with NodeFlow.

* move view.

* address comments.

* fix lint.

* fix lint.

* remove static_cast.

* fix docstring.

* fix comments.

* break SampleSubgraph.

* move neighbor sampling to sampler.cc

* fix comments.

* rename.

* split neighbor_list.

* address comments.

* fix.

* remove TODO.
 2019-02-19 15:49:28 -08:00
Zihao Ye ae1806f651 [Bugfix] RGCN tutorial (#388) 
* fix rgcn tutorial

* small fix

* upd
 2019-02-15 11:14:56 +08:00
brett koonce 707334ce85 minor spelling tweaks (#349) 
* minor spelling tweaks

* Update CONTRIBUTORS.md
 2019-01-10 12:02:31 -05:00
Minjie Wang 6f9ae8d61e [Doc] main doc page update and contribute guide (#336) 
* reorg the doc mainpage

* contribute guide
 2019-01-04 17:02:37 -05:00
Da Zheng 01e8794f12 [Doc] Show MXNet examples (#318) 
* update GNN tutorial.

* Update README.txt
 2018-12-17 15:25:13 -05:00
Lingfan Yu 0cbe521b99 [Doc] Fix document building for multiple tensor backends (#301) 
* remove loading backend in sse

* build mxnet in a second run

* a third run to fix everything

* fix docstring in sampler

* fix docstring in transformer

* README for doc build

* some reordering and printing

* use filename_pattern instead of ignore_pattern to reduce warning at the cost of redundant work...

* add env var to use mxnet in Jenkinsfile

* remove step 3, it's already fixed by previous commit
 2018-12-12 11:07:46 -05:00
Minjie Wang af23c45726 [Release] update version (#297) 
* update version; add news.md; modify contributing.md

* change urls to dmlc
 2018-12-11 15:40:51 -05:00
Zihao Ye 8bc01c6309 [Tutorial] Tutorial fix (SSE link & Transformer) (#285) 
* upd tutorial

* upd tutorial
 2018-12-10 11:26:19 -05:00
Zihao Ye 9f32554296 [Model]Transformer (#186) 
* change the signature of node/edge filter

* upd filter

* Support multi-dimension node feature in SPMV

* push transformer

* remove some experimental settings

* stable version

* hotfix

* upd tutorial

* upd README

* merge

* remove redundency

* remove tqdm

* several changes

* Refactor

* Refactor

* tutorial train

* fixed a bug

* fixed perf issue

* upd

* change dir

* move un-related to contrib

* tutuorial code

* remove redundency

* upd

* upd

* upd

* upd

* improve viz

* universal done

* halt norm

* fixed a bug

* add draw graph

* fixed several bugs

* remove dependency on core

* upd format of README

* trigger

* trigger

* upd viz

* trigger

* add transformer tutorial

* fix tutorial

* fix readme

* small fix on tutorials

* url fix in readme

* fixed func link

* upd
 2018-12-07 15:22:46 +08:00
VoVAllen cd907cddfa [Tutorial] Add sse tutorial & MXNet Tutorial CI (#252) 
* add sse tutorial

* add mxnet tutorial ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix ci

* Fix ci

* Fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix CI

Fix CI image

* permission fix

* fix a bug in the code.

* small fix

* fix doc

* fix ci

* shorten the iters

* fix

* remove extra file

* add load_backend api to dynamically switch to another backend

* try fix

* fix tutorial

* fix tutorial

* fix bug in tutorial
 2018-12-05 16:21:44 -05:00
Lingfan Yu f4a9a455f5 [Doc] Fix hyperlink in tutorial of tutorals (#260) 
* fix all code tutorial links and typos in texts

* sse readme format

* fix

* sse paper link

* gat readme

* fix
 2018-12-05 15:04:27 -05:00
VoVAllen 16cc528757 [Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout (#236) 
* improve capsule tutorial with jinyang

* fix wrong layout of second-level tutorial

* delete transformer
 2018-12-04 10:46:49 -05:00