mirrors / dmlc--dgl

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0.4.x
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23 次代码提交

作者 SHA1 备注 提交日期
Quan (Andy) Gan 24dc71fc95 [BUG] Fix #1409 (#1411) 
* [BUG] Fix #1409

* fix test
 2020-04-03 20:45:56 +08:00
xiang song(charlie.song) 67cb7a43a0 [Feature] Deprecate multigraph (#1389) 
* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-28 21:31:24 +08:00
Jinjing Zhou 1e27e90e4e [MXNet] Patch mxnet unittest (#1395) 
* patch

* turn off tf test

* skip test

* fix
 2020-03-26 01:05:59 +08:00
Mufei Li 0f40c6e49c [Hetero] Replace card with num_nodes 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-20 16:56:53 +08:00
Quan (Andy) Gan 0a51dc5435 [Bug] Fix dsttype in GraphSAGE minibatch model (#1371) 
* fix for new ntype API for blocks

* adding two new interfaces
 2020-03-18 23:57:03 +08:00
Minjie Wang 6111ea4665 [Model] RGCN mini-batch training; Better bipartite graph support (#1337) 
* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore
 2020-03-16 18:58:06 +08:00
Quan (Andy) Gan ce6e19f233 [Bugfix] Allows node types with no inbound/outbound edges (#1323) 
* add num nodes in ctors

* fix

* lint

* addresses comments

* replace with constexpr

* remove function with rvalue reference

* address comments
 2020-03-08 01:11:44 +08:00
Quan (Andy) Gan c3a33407fe [Feature] PinSAGE sampler (#1249) 
* [WIP] PinSAGE operators

* moved the edge remapping mess into C

* some docstrings

* lint

* lint x2

* lint x3

* skip gpu test on topk

* extend pinsage to any metapath

* lint x4

* addresses #1265

* add always_preserve (fixes #1266) and fix a silly bug

* disable gpu test on compaction

* lint

* fix a horrible bug and add more tests

* lint

* addresses comments

* lint

* bugfix

* addresses comments

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-02-28 20:46:13 +08:00
Minjie Wang c7f6cf6282 [Bugfix] Consistent order for cross-type stack reducer (#1267) 
* WIP

* fix shape of stack reducer

* apply merge order by edge id for stack reducer
 2020-02-18 13:54:11 +08:00
Quan (Andy) Gan c7c0fd0e37 [Feature] Accessing node/edge types in UDFs. (#1243) 
* typed udf

* docstrings
 2020-02-17 16:02:56 +08:00
Quan (Andy) Gan eeeb52f464 [Feature] Preference to COO for "hypersparse" unit graphs & graph compaction (#1238) 
* unit graph that prefers coo queries

* auto detect coo preference

* forgot some functions

* disable lint on detect_prefer_coo

* reorg

* change comment

* lint

* fix

* move array_utils.h to src

* compact graph impl

* fix redundant copying in idhashmap

* docstring

* moving preference detection to C

* lint

* fix unit test & address comments

* hypersparse autorestrict

* docstring & fix

* revert copyto and asnumbits

* fix stupid bug

* lint

* leave a TODO for sorted COO

* fixing same node type mapping to different id in different graphs

* addresses comments

* made induced nodes a feautre column

* lint?
 2020-02-04 22:39:28 +08:00
xiang song(charlie.song) 31a7d50964 [Bug Fix] Add boundary check for heterograph build with card as input (#1192) 
* Add boundary check for heterograph build with card as input

* Fix when u or v is empty

* fix test_kernel.py error print

* Revert "fix test_kernel.py error print"

This reverts commit a71c20292549c0ac62a5326c30669ca4bde8febc.

* Turn op validation check on graph and bipartite by default

* upd

* udp

* upd

* update test
 2020-01-18 17:18:40 +08:00
Quan (Andy) Gan 28a24414c8 [BUG] Fix empty heterograph creation with list & tuple (#1188) 
* [BUG] Fix empty heterograph creation with list & tuple

* more fix
 2020-01-09 22:40:27 +08:00
VoVAllen d30a69bf27 [Backend] TF backend (#978) 
* tf

* add builtin support

* fiix

* pytest

* fix

* fix

* fix some bugs

* fix selecting

* fix todo

* fix test

* fix test fail in tf

* fix

* fix

* fix gather row

* fix gather row

* log backend

* fix gather row

* fix gather row

* fix for pytorch

* fix

* fix

* fix

* fix

* fix

* fix tests

* fix

* fix

* fix

* fix

* fix

* fix

* fix convert

* fix

* fix

* fix

* fix inplace

* add alignment setting

* add debug option

* Revert "add alignment setting"

This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.

* tf ci

* fix lint

* fix lint

* add tfdlpack

* fix type

* add env

* fix backend

* fix

* fix tests

* remove one_hot

* remove comment

* remove comment

* fix

* use pip to install all

* fix test

* fix base

* fix

* fix

* add skip

* upgrade cmake

* change version

* change ci

* fix

* fix

* fix

* fix

* fix seg fault

* fix

* fix python version

* fix

* try fix

* fix

* fix

* tf takes longer time in ci

* change py version

* fix

* fix

* fix oom

* change kg env

* change kg env

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* 我再也不搞各种乱七八糟环境了……

* use pytest

* Chang image
 2019-12-20 15:56:51 +08:00
VoVAllen dd65ee211e [CI] Change tests for flexibility 
* change ci image

* fix

* force bash

* fix

* fix python version

* fix

* fix

* fix

* update gpu

* cuda

* jenkins

* fix build sh

* fix

* Revert "fix"

This reverts commit 6b091914b3ef6b4300fa662ee375aa4b27944f5c.

* try fix

* fix

* Revert "fix"

This reverts commit e42c3035fa4974c6b197aaba0748f7b45113ddaa.

* try fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix tests

* try fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix ctx problem

* fix many tests

* fix typo

* add backend

* move to pytorch folder

* fix?

* fix ci

* try skip

* try false

* try?

* try?

* Revert to 7d9a52f

* fix various

* fix lint

* Revert Jenkinsfile

* revert env

* revert env

* address comment

* remove file
 2019-12-16 14:54:37 +08:00
Zihao Ye fa0ee46a01 [hotfix] node id validity check (#1073) 
* fix

* improve

* fix lint

* upd

* fix

* upd
 2019-12-06 01:36:41 +08:00
Zhang Zhi 4f6063124b [Graph]To(device) should return updated object (#1057) 
* To(device) should return updated object

* Add test case and doc

* Add another doc

* Add descriptions  and a test

* Pass test
 2019-11-29 00:15:22 +08:00
Mufei Li 6694f7b945 [Bug] Fix DGLHeteroGraph.edge_type_subgraph (#1040) 
* Update

* Try CI
 2019-11-25 03:35:25 +08:00
Quan (Andy) Gan 0ca52bfc88 [Hetero] Create heterograph from dictionary of edge lists (#882) 
* [Hetero] Create heterograph from dictionary of edge lists

* rename

* address comments
 2019-09-30 15:41:41 +08:00
Mufei Li c03046a08f [Model][Hetero] HAN (#868) 
* Add HAN

* Fix

* WIP; load raw ACM dataset

* DGL's own preprocessing with metapath coalescer

* various fixes

* comparison against simple logistic regression

* rename

* fix test
 2019-09-27 12:53:16 +08:00
Quan (Andy) Gan f9c0217d27 [Bugfix] Fix number of nodes mismatch in to_homo() conversion (#874) 2019-09-22 19:30:24 +08:00
Minjie Wang 9b4d60799a [Hetero] New syntax (#824) 
* WIP. remove graph arg in NodeBatch and EdgeBatch

* refactor: use graph adapter for scheduler

* WIP: recv

* draft impl

* stuck at bipartite

* bipartite->unitgraph; support dsttype == srctype

* pass test_query

* pass test_query

* pass test_view

* test apply

* pass udf message passing tests

* pass quan's test using builtins

* WIP: wildcard slicing

* new construct methods

* broken

* good

* add stack cross reducer

* fix bug; fix mx

* fix bug in csrmm2 when the CSR is not square

* lint

* removed FlattenedHeteroGraph class

* WIP

* prop nodes, prop edges, filter nodes/edges

* add DGLGraph tests to heterograph. Fix several bugs

* finish nx<->hetero graph conversion

* create bipartite from nx

* more spec on hetero/homo conversion

* silly fixes

* check node and edge types

* repr

* to api

* adj APIs

* inc

* fix some lints and bugs

* fix some lints

* hetero/homo conversion

* fix flatten test

* more spec in hetero_from_homo and test

* flatten using concat names

* WIP: creators

* rewrite hetero_from_homo in a more efficient way

* remove useless variables

* fix lint

* subgraphs and typed subgraphs

* lint & removed heterosubgraph class

* lint x2

* disable heterograph mutation test

* docstring update

* add edge id for nx graph test

* fix mx unittests

* fix bug

* try fix

* fix unittest when cross_reducer is stack

* fix ci

* fix nx bipartite bug; docstring

* fix scipy creation bug

* lint

* fix bug when converting heterograph from homograph

* fix bug in hetero_from_homo about ntype order

* trailing white

* docstring fixes for add_foo and data views

* docstring for relation slice

* to_hetero and to_homo with feature support

* lint

* lint

* DGLGraph compatibility

* incidence matrix & docstring fixes

* example string fixes

* feature in hetero_from_relations

* deduplication of edge types in to_hetero

* fix lint

* fix
 2019-09-17 15:41:57 -04:00
Quan (Andy) Gan 52d4535b61 [Hetero][RFC] Heterogeneous graph Python interfaces & Message Passing (#752) 
* moving heterograph index to another file

* node view

* python interfaces

* heterograph init

* bug fixes

* docstring for readonly

* more docstring

* unit tests & lint

* oops

* oops x2

* removed node/edge addition

* addressed comments

* lint

* rw on frames with one node/edge type

* homograph with underlying heterograph demo

* view is not necessary

* bugfix

* replace

* scheduler, builtins not working yet

* moving bipartite.h to header

* moving back bipartite to bipartite.h

* oops

* asbits and copyto for bipartite

* tested update_all and send_and_recv

* lightweight node & edge type retrieval

* oops

* sorry

* removing obsolete code

* oops

* lint

* various bug fixes & more tests

* UDF tests

* multiple type number_of_nodes and number_of_edges

* docstring fixes

* more tests

* going for dict in initialization

* lint

* updated api as per discussions

* lint

* bug

* bugfix

* moving back bipartite impl to cc

* note on views

* fix
 2019-08-23 15:45:37 -04:00