7c47d8c9b4
[Feature] Simplify shared memory graph index ( #1381 )
...
* simplify shared memory graph index.
* fix.
* remove edge_dir in SharedMemGraphStore.
* avoid creating shared-mem graph store with from_csr.
* simplify from_csr.
* add comments.
* fix lint.
* remove the test.
* fix compilation error.
* fix a bug.
* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal >
2020-04-05 15:33:47 -07:00
67cb7a43a0
[Feature] Deprecate multigraph ( #1389 )
...
* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-28 21:31:24 +08:00
93ac29ce34
[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph ( #1216 )
...
* upd
* upd
* upd
* lint
* fix
* fix test
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd tutorial
* upd
* upd
* fix kg
* upd doc organization
* refresh test
* upd
* refactor doc
* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-05 18:03:57 +08:00
dd65ee211e
[CI] Change tests for flexibility
...
* change ci image
* fix
* force bash
* fix
* fix python version
* fix
* fix
* fix
* update gpu
* cuda
* jenkins
* fix build sh
* fix
* Revert "fix"
This reverts commit 6b091914b3ef6b4300fa662ee375aa4b27944f5c.
* try fix
* fix
* Revert "fix"
This reverts commit e42c3035fa4974c6b197aaba0748f7b45113ddaa.
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix tests
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix ctx problem
* fix many tests
* fix typo
* add backend
* move to pytorch folder
* fix?
* fix ci
* try skip
* try false
* try?
* try?
* Revert to 7d9a52f
* fix various
* fix lint
* Revert Jenkinsfile
* revert env
* revert env
* address comment
* remove file
2019-12-16 14:54:37 +08:00
baa16231f3
[Feature] Remove nodes/edges. ( #599 )
...
* upd
* upd
* reformat
* upd
* upd
* add test
* fix arange
* fix slight bug
* upd
* trigger
* upd docs
* upd
* upd
* upd
* change subgraph to be raw data wrapper
* upd
* fix test
2019-06-08 13:44:36 +08:00
01a4cc5b7b
[Graph] Add API to convert graph to simple graph ( #587 )
...
* to simple
* WIP: multigraph flag
* graph index refactor; pass basic testing
* graph index refactor; pass basic testing
* fix bug in to_simple; pass torch test
* fix mx utest
* fix example
* fix lint
* fix ci
* poke ci
* poke ci
* WIP
* poke ci
* poke ci
* poke ci
* change ci workspace
* poke ci
* poke ci
* poke ci
* poke ci
* delete ci
* use enum for multigraph flag
2019-06-01 23:32:46 -04:00
8f378d90ad
[BUGFIX] fix bugs for running GCN on giant graphs. ( #561 )
...
* load mxnet csr.
* enable load large csr.
* fix
* fix.
* fix int overflow.
* fix test.
2019-05-25 11:09:33 -07:00
ce27ebbbd0
[BUGIFX] fix a bug in edge_ids ( #560 )
...
* add test.
* fix compute.
* fix test.
* turn on test.
* fix a bug.
* add test.
* fix.
* disable test.
2019-05-23 15:25:38 -07:00
bfdd1eaa44
[Feature] Create shared memory graph store. ( #468 )
...
* accelerate gcn_ns.
* add timing.
* run infer with whole graph.
* distributed gcn_ns.
* reconstruct gcn_ns.
* minor fix.
* change graphsage_cv for numa.
* fix #OMP threads.
* accelerate graphsage_cv.
* fix a weird bug.
* add profiler in graphsage_cv.
* accelerate graphsage_cv.
manually aggregate neighbors' embeddings with pull.
* load csr directly in gcn_ns_sc.
* parallel sort for graph index.
* Revert "parallel sort for graph index."
This reverts commit 86fe2c7117fe5e56b0d481b39849c258b166945b.
* run gcn_ns_sc on GPUs.
* acc gcn_cv_sc.
* change gcn_cv for numa.
* fix gcn_cv to use numa and gpu.
* improve graphsage_cv to use numa and gpu.
* improve gcn_ns.
* improve graphsage_cv.
* init shared memory graph store.
* fix.
* enable init ndata.
* improve tests.
* add bidirectional communication.
* link to rt.
* fix compilation error.
* fix shared memory init.
* use MessageQueue for inter-process communication.
* reconstruct immutable graph csr.
* fix gcn.
* load csr to shared memory.
* fix minor bugs.
* add comments.
* refactor SharedMemory.
* fix bugs in ImmutableGraph.
* create CSR graph from shared memory.
* add more test for loading a csr graph.
* terminate graph store properly.
* allow initializing ndata in the graph store server.
* use RPC for inter-process communication.
* a script for loading a graph.
* allow customizing port.
* list all ndata and edata.
* support dtype.
* reorganize SharedMemoryGraphStore.
* fix ndata shape.
* reconstruct gcn_ns.
* print info.
* set omp in gcn_ns.
* reset sampling examples.
* fix lint.
* fix lint.
* reset gcn.
* disable shared memory in windows.
* fix.
* fix.
* reset changes.
* revert nodeflow changes.
* fix cmake.
* fix test.
* fix test.
* fix test.
* fix test.
* add comments.
* fix test.
* move vector out.
* fix lint.
* fix lint.
* move SharedMemory.
* update cmake.
* update comment.
* fix comments.
* Revert "update cmake."
This reverts commit 592445e37077f70a6e3f2e5245f9a3d086b04f3b.
* update cmake.
* add comments.
* rename.
* change the comment.
* fix a bug.
* rename.
* add comments.
* add comments.
* add init_edata.
* rewrite memory alloc.
* move vector to CSR.
* fix.
* init data.
* Revert "init data."
This reverts commit 2b217b9553911b7dd84a9f1d9b68430b5aa18e23.
* init data.
* init new columns correctly.
2019-04-08 12:09:02 -07:00
929742b588
[Feature] Reimplement Immutable graph index in DGL ( #342 )
...
* init.
* it's compiled.
* add immutable graph constructor.
* add immutable graph API.
* fix.
* impl get adjacency matrix.
* fix.
* fix graph_index from scipy matrix.
* add neighbor sampling.
* remap vertex ids.
* fix.
* move sampler test.
* fix tests.
* add comments
* remove mxnet-specific immutable graph.
* fix.
* fix lint.
* fix.
* try to fix windows compile error.
* fix.
* fix.
* add test.
* unify Graph and ImmutableGraph.
* fix bugs.
* fix compile.
* move immutable graph.
* fix.
* remove print.
* fix lint.
* fix
* fix lint.
* fix lint.
* fix test.
* fix comments.
* merge GraphIndex and ImmutableGraphIndex.
* temp fix.
* impl GetAdj.
* fix lint
* fix.
* fix.
* fix.
* fix.
* fix.
* use csr only for readonly graph.
* Revert "use csr only for readonly graph."
This reverts commit 8e24bb033af8504531b22849de5b7567b168e0d5.
* remove code.
* fix.
* fix.
* fix.
* fix.
* fix.
* fix.
* address comments.
* fix for comments.
* fix comments.
* revert.
* move test_graph_index to compute.
* fix.
* fix.
* impl GetAdj for coo.
* fix.
* fix tests.
* address comments.
* address comments.
* fix comment.
* address comments.
* use lambda.
* other comments.
* address comments.
* modify the semantics of edges.
* fix order.
* use DGLIdIter
* fix.
* remove NotImplemented.
* revert some code.
2019-01-17 09:59:53 +08:00
Da Zheng