mirrors / dmlc--dgl

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0.4.x
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26 次代码提交

作者 SHA1 备注 提交日期
Quan (Andy) Gan e3a9a6bba8 add an optional include_dst_in_src argument (#1401) 2020-03-30 12:06:12 +08:00
xiang song(charlie.song) 67cb7a43a0 [Feature] Deprecate multigraph (#1389) 
* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-28 21:31:24 +08:00
Quan (Andy) Gan bbfff8ce76 [Feature] Casting between DGLGraph and DGLHeteroGraph (#1391) 
* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-03-27 13:34:55 +08:00
Quan (Andy) Gan b9c65e91ef [BUG] Another fix on remove edges when all edges are removed (#1386) 
* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet
 2020-03-23 19:04:52 +08:00
Quan (Andy) Gan d27b485912 [BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) 2020-03-22 21:09:44 +08:00
Mufei Li 0f40c6e49c [Hetero] Replace card with num_nodes 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-20 16:56:53 +08:00
Minjie Wang 6111ea4665 [Model] RGCN mini-batch training; Better bipartite graph support (#1337) 
* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore
 2020-03-16 18:58:06 +08:00
Da Zheng 3938b399d9 [BUGFIX] metis partition should generate a subgraph to the original graph. (#1352) 
* fix a partition.

* add comments.
 2020-03-12 10:43:08 +08:00
Da Zheng 1a584ced11 [Feature] Improve the speed of to_bidirected (#1327) 
* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.
 2020-03-10 22:44:32 -07:00
Da Zheng 0e153c4baf [Feature] add metis partitioning to DGL (#1308) 
* add metis.

* add test.

* construct partition id.

* link to METIS github repo.

* update metis.

* add a tool for partitioning a graph.

* update metis.

* update.

* update.

* fix metis.

* fix lint

* fix indent.

* another way of building metis.

* disable metis in windows.

* test windows

* fix.

* disable metis for windows properly.

* fix for tensorflow.

* skip test for gpu.

* make graph symmetric

* address comments.

* more comments.

* fix compile

* fix a bug.

* add test.

* change the default #hops of HALO nodes.

Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
 2020-03-07 23:24:03 -08:00
Quan (Andy) Gan a9520f71ce [Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) 
* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data
 2020-03-08 02:38:29 +08:00
Zihao Ye 93ac29ce34 [Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) 
* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-03-05 18:03:57 +08:00
Quan (Andy) Gan c3a33407fe [Feature] PinSAGE sampler (#1249) 
* [WIP] PinSAGE operators

* moved the edge remapping mess into C

* some docstrings

* lint

* lint x2

* lint x3

* skip gpu test on topk

* extend pinsage to any metapath

* lint x4

* addresses #1265

* add always_preserve (fixes #1266) and fix a silly bug

* disable gpu test on compaction

* lint

* fix a horrible bug and add more tests

* lint

* addresses comments

* lint

* bugfix

* addresses comments

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-02-28 20:46:13 +08:00
Minjie Wang f8d4264e5b [Feature] Neighbor-hood based sampling APIs (#1251) 
* WIP: working on random choices

* light slice

* basic CPU impl

* add python binding; fix CreateFromCOO and CreateFromCSR returning unitgraph

* simple test case works

* fix bug in slicing probability array

* fix bug in getting the correct relation graph

* fix bug in creating placeholder graph

* enable omp

* add cpp test

* sample topk

* add in|out_subgraph

* try fix lint; passed all unittests

* fix lint

* fix msvc compile; add sorted flag and constructors

* fix msvc

* coosort

* COOSort; CSRRowWiseSampling; CSRRowWiseTopk

* WIP: remove DType in CSR and COO; Restrict data array to be IdArray

* fix all CSR ops for missing data array

* compiled

* passed tests

* lint

* test sampling out edge

* test different per-relation fanout/k values

* fix bug in random choice

* finished cpptest

* fix compile

* Add induced edges

* add check

* fixed bug in sampling on hypersparse graph; add tests

* add ascending flag

* in|out_subgraph returns subgraph and induced eid

* address comments

* lint

* fix
 2020-02-17 21:25:21 +08:00
Da Zheng e890a899fc Partition a graph with HALO nodes (#1076) 
* get subgraph with halo.

* add partition function.

* add comment.

* parallel partition.

* fix a compilation error.

* fix lint error.

* address comments.

* add comments.

* fix for TF.
 2019-12-23 08:46:53 -08:00
Mufei Li b599f6ed96 Update (#1090) 2019-12-11 13:39:18 +08:00
Mufei Li c03046a08f [Model][Hetero] HAN (#868) 
* Add HAN

* Fix

* WIP; load raw ACM dataset

* DGL's own preprocessing with metapath coalescer

* various fixes

* comparison against simple logistic regression

* rename

* fix test
 2019-09-27 12:53:16 +08:00
VoVAllen e16667bfb9 [Fix] Fix Transform (#876) 
* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix

* fix

* fix lint

* fixlint
 2019-09-26 21:21:53 -04:00
VoVAllen bf8bb58f60 [Transform] Add to_self_loop, remove_self_loop, onehot_degree transform (#862) 
* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix
 2019-09-21 00:05:38 +08:00
Quan (Andy) Gan 14bffe9728 [NN] Renaming NearestNeighborGraph to KNNGraph (#802) 
* initial commit

* second commit

* another commit

* change docstring

* migrating to dgl.nn

* fixes

* docs

* lint

* multiple fixes

* doc

* renaming nearest neighbor graph
 2019-08-28 12:20:35 +08:00
Quan (Andy) Gan dc19cd5687 [Example] Dynamic Graph CNN on Point Cloud (#789) 
* initial commit

* second commit

* another commit

* change docstring

* migrating to dgl.nn

* fixes

* docs

* lint

* multiple fixes

* doc
 2019-08-28 09:21:57 +08:00
Zihao Ye 650f6ee1e0 [NN] Add commonly used GNN models from examples to dgl.nn modules. (#748) 
* gat

* upd

* upd sage

* upd

* upd

* upd

* upd

* upd

* add gmmconv

* upd ggnn

* upd

* upd

* upd

* upd

* add citation examples

* add README

* fix cheb

* improve doc

* formula

* upd

* trigger

* lint

* lint

* upd

* add test for transform

* add test

* check

* upd

* improve doc

* shape check

* upd

* densechebconv, currently not correct (?)

* fix cheb

* fix

* upd

* upd sgc-reddit

* upd

* trigger
 2019-08-27 18:21:19 +08:00
Minjie Wang 67dc11971f [Refactor] Use object system for all CAPIs (#716) 
* WIP: using object system for graph

* c++ side refactoring done; compiled

* remove stale apis

* fix bug in DGLGraphCreate; passed test_graph.py

* fix bug in python modify; passed utest for pytorch/cpu

* fix lint

* address comments
 2019-07-23 12:47:05 -04:00
Mufei Li fb9dcc51ff [Feature] Add API to convert graph to bidirected graph (#598) 
* to_bidirected

* to_bidirected

* Fix style

* Fix

* Update

* Fix

* Fix

* Update

* Add examples
 2019-06-10 14:02:29 +08:00
Minjie Wang 01a4cc5b7b [Graph] Add API to convert graph to simple graph (#587) 
* to simple

* WIP: multigraph flag

* graph index refactor; pass basic testing

* graph index refactor; pass basic testing

* fix bug in to_simple; pass torch test

* fix mx utest

* fix example

* fix lint

* fix ci

* poke ci

* poke ci

* WIP

* poke ci

* poke ci

* poke ci

* change ci workspace

* poke ci

* poke ci

* poke ci

* poke ci

* delete ci

* use enum for multigraph flag
 2019-06-01 23:32:46 -04:00
Mufei Li 24bbdb745e [Feature] Reversed Graph and Transform Module (#331) 
* reverse a graph

* Reverse a graph

* Fix

* Revert "Fix"

This reverts commit 1728826b4f3a083b76dfc0fdecd2bbf943a971b2.

* Fix

* Fix

* Delete vcs.xml

* Delete Project_Default.xml

* Fix

* Fix

* Fix

* Remove outdated test

* Reorg transform and update reverse (#2)

* Reorg transform and update reverse

* Fix doc and test

* Update test

* Resolve conflict

* CI oriented fix

* Remove outdated import

* Fix import

* Fix import

* define __all__ for wildcard imports

* Fix import

* Address circular imports

* Fix

* Fix test case

* Fix

* Fix

* Remove unused import

* Fix

* Fix

* Fix
 2019-01-04 13:51:19 -05:00