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0.4.x
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19 次代码提交

作者 SHA1 备注 提交日期
xiang song(charlie.song) 67cb7a43a0 [Feature] Deprecate multigraph (#1389) 
* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-28 21:31:24 +08:00
Mufei Li 0f40c6e49c [Hetero] Replace card with num_nodes 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-20 16:56:53 +08:00
Quan (Andy) Gan a9520f71ce [Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) 
* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data
 2020-03-08 02:38:29 +08:00
Quan (Andy) Gan ce6e19f233 [Bugfix] Allows node types with no inbound/outbound edges (#1323) 
* add num nodes in ctors

* fix

* lint

* addresses comments

* replace with constexpr

* remove function with rvalue reference

* address comments
 2020-03-08 01:11:44 +08:00
Quan (Andy) Gan 1c4bfb62bb [Performance] Replace np.array with np.asarray (#1301) 
* replace np.array with np.asarray

* fix

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-03-03 20:45:41 +08:00
Quan (Andy) Gan c3a33407fe [Feature] PinSAGE sampler (#1249) 
* [WIP] PinSAGE operators

* moved the edge remapping mess into C

* some docstrings

* lint

* lint x2

* lint x3

* skip gpu test on topk

* extend pinsage to any metapath

* lint x4

* addresses #1265

* add always_preserve (fixes #1266) and fix a silly bug

* disable gpu test on compaction

* lint

* fix a horrible bug and add more tests

* lint

* addresses comments

* lint

* bugfix

* addresses comments

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-02-28 20:46:13 +08:00
Quan (Andy) Gan eeeb52f464 [Feature] Preference to COO for "hypersparse" unit graphs & graph compaction (#1238) 
* unit graph that prefers coo queries

* auto detect coo preference

* forgot some functions

* disable lint on detect_prefer_coo

* reorg

* change comment

* lint

* fix

* move array_utils.h to src

* compact graph impl

* fix redundant copying in idhashmap

* docstring

* moving preference detection to C

* lint

* fix unit test & address comments

* hypersparse autorestrict

* docstring & fix

* revert copyto and asnumbits

* fix stupid bug

* lint

* leave a TODO for sorted COO

* fixing same node type mapping to different id in different graphs

* addresses comments

* made induced nodes a feautre column

* lint?
 2020-02-04 22:39:28 +08:00
xiang song(charlie.song) 31a7d50964 [Bug Fix] Add boundary check for heterograph build with card as input (#1192) 
* Add boundary check for heterograph build with card as input

* Fix when u or v is empty

* fix test_kernel.py error print

* Revert "fix test_kernel.py error print"

This reverts commit a71c20292549c0ac62a5326c30669ca4bde8febc.

* Turn op validation check on graph and bipartite by default

* upd

* udp

* upd

* update test
 2020-01-18 17:18:40 +08:00
Quan (Andy) Gan 28a24414c8 [BUG] Fix empty heterograph creation with list & tuple (#1188) 
* [BUG] Fix empty heterograph creation with list & tuple

* more fix
 2020-01-09 22:40:27 +08:00
Zihao Ye 870857cfba udp (#1083) 2019-12-09 14:52:20 +08:00
Zihao Ye fa0ee46a01 [hotfix] node id validity check (#1073) 
* fix

* improve

* fix lint

* upd

* fix

* upd
 2019-12-06 01:36:41 +08:00
Mufei Li ead64de98e [Hetero] Batching/Unbatching DGLHeteroGraph (#1017) 
* Update

* Update

* Update

* Fix

* CI style fix

* CI fix style

* Fix

* Try CI

* Fix test

* Update

* Update

* Update

* Update
 2019-11-26 14:40:50 +08:00
Mufei Li f1542b9dfa Fix (#1019) 2019-11-20 15:14:40 +08:00
Mufei Li e2b7f745ca [Hetero] Doc (#892) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* style fixes & undefined name fix

* transpose=False in test
 2019-10-06 20:17:40 +08:00
Quan (Andy) Gan 33b8700b7d [Bugfix][Hetero] Fix typo (#891) 
Don't know why it passed the merging test...
 2019-09-30 17:05:58 +08:00
Quan (Andy) Gan 0ca52bfc88 [Hetero] Create heterograph from dictionary of edge lists (#882) 
* [Hetero] Create heterograph from dictionary of edge lists

* rename

* address comments
 2019-09-30 15:41:41 +08:00
Minjie Wang 02fe316d7c [Bugfix][Hetero] fix to_hetero when metagraph is given (#873) 
* fix to_hetero when metagraph is given

* minor fix

* add more check
 2019-09-22 11:41:49 -04:00
Quan (Andy) Gan f9c0217d27 [Bugfix] Fix number of nodes mismatch in to_homo() conversion (#874) 2019-09-22 19:30:24 +08:00
Minjie Wang 9b4d60799a [Hetero] New syntax (#824) 
* WIP. remove graph arg in NodeBatch and EdgeBatch

* refactor: use graph adapter for scheduler

* WIP: recv

* draft impl

* stuck at bipartite

* bipartite->unitgraph; support dsttype == srctype

* pass test_query

* pass test_query

* pass test_view

* test apply

* pass udf message passing tests

* pass quan's test using builtins

* WIP: wildcard slicing

* new construct methods

* broken

* good

* add stack cross reducer

* fix bug; fix mx

* fix bug in csrmm2 when the CSR is not square

* lint

* removed FlattenedHeteroGraph class

* WIP

* prop nodes, prop edges, filter nodes/edges

* add DGLGraph tests to heterograph. Fix several bugs

* finish nx<->hetero graph conversion

* create bipartite from nx

* more spec on hetero/homo conversion

* silly fixes

* check node and edge types

* repr

* to api

* adj APIs

* inc

* fix some lints and bugs

* fix some lints

* hetero/homo conversion

* fix flatten test

* more spec in hetero_from_homo and test

* flatten using concat names

* WIP: creators

* rewrite hetero_from_homo in a more efficient way

* remove useless variables

* fix lint

* subgraphs and typed subgraphs

* lint & removed heterosubgraph class

* lint x2

* disable heterograph mutation test

* docstring update

* add edge id for nx graph test

* fix mx unittests

* fix bug

* try fix

* fix unittest when cross_reducer is stack

* fix ci

* fix nx bipartite bug; docstring

* fix scipy creation bug

* lint

* fix bug when converting heterograph from homograph

* fix bug in hetero_from_homo about ntype order

* trailing white

* docstring fixes for add_foo and data views

* docstring for relation slice

* to_hetero and to_homo with feature support

* lint

* lint

* DGLGraph compatibility

* incidence matrix & docstring fixes

* example string fixes

* feature in hetero_from_relations

* deduplication of edge types in to_hetero

* fix lint

* fix
 2019-09-17 15:41:57 -04:00