* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
* make graph symmetric
* call gklib routine.
* use gklib version except in windows.
* minor errors.
* fix test.
* update doc.
* fix a compile error.
* fix.
* add comments for the new C API.
* fix a bug.
* address comments.
* fix compile error.
* fix comment.
* add metis.
* add test.
* construct partition id.
* link to METIS github repo.
* update metis.
* add a tool for partitioning a graph.
* update metis.
* update.
* update.
* fix metis.
* fix lint
* fix indent.
* another way of building metis.
* disable metis in windows.
* test windows
* fix.
* disable metis for windows properly.
* fix for tensorflow.
* skip test for gpu.
* make graph symmetric
* address comments.
* more comments.
* fix compile
* fix a bug.
* add test.
* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
* remove edge and to bipartite and graphsage with sampling
* fixes
* fixes
* fixes
* reenable multigpu training
* fixes
* compatibility in DGLGraph
* rename to compact_as_bipartite
* bugfix
* lint
* add offline inference
* skip GPU tests
* fix
* addresses comments
* fix
* fix
* fix
* more tests
* more docs and unit tests
* workaround for empty slice on empty data
* improve performance of sample_neighbors
* some more improve
* test script
* benchmarks
* multi process
* update more tests
* WIP
* adding two API for state saving
* add create from state
* upd test
* missing file
* wip: pickle/unpickle
* more c apis
* find the problem of empty data array
* add null array; pickling speed is bad
* still bad perf
* still bad perf
* wip
* fix the pickle speed test; now everything looks good
* minor fix
* bugfix
* some lint fix
* address comments
* more fix
* fix lint
* add utest for random.choice
* add utest for dgl.rand_graph
* fix cpp utests
* try fix ci
* fix bug in TF backend
* upd choice docstring
* address comments
* upd
* try fix compile
* add comment
* [WIP] PinSAGE operators
* moved the edge remapping mess into C
* some docstrings
* lint
* lint x2
* lint x3
* skip gpu test on topk
* extend pinsage to any metapath
* lint x4
* addresses #1265
* add always_preserve (fixes#1266) and fix a silly bug
* disable gpu test on compaction
* lint
* fix a horrible bug and add more tests
* lint
* addresses comments
* lint
* bugfix
* addresses comments
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
* graph format
* fix lint
* lint
* fix
* unit test
* lint
* add magic num
* move serialize out of struct
* lint
Co-authored-by: zhoujinjing09 <zhoujinjing09@users.noreply.github.com>
* unit graph that prefers coo queries
* auto detect coo preference
* forgot some functions
* disable lint on detect_prefer_coo
* reorg
* change comment
* lint
* fix
* move array_utils.h to src
* compact graph impl
* fix redundant copying in idhashmap
* docstring
* moving preference detection to C
* lint
* fix unit test & address comments
* hypersparse autorestrict
* docstring & fix
* revert copyto and asnumbits
* fix stupid bug
* lint
* leave a TODO for sorted COO
* fixing same node type mapping to different id in different graphs
* addresses comments
* made induced nodes a feautre column
* lint?
* trying to refactor IndexSelect
* partial implementation
* add index select and assign for floats as well
* move to random choice source
* more updates
* fixes
* fixes
* more fixes
* adding python impl
* fixes
* unit test
* lint
* lint x2
* lint x3
* update metapath2vec
* debugging performance
* still debugging for performance
* tuning
* switching to succvec
* redo
* revert non-uniform sampler to use vector
* still not fast
* why does this crash with OpenMP???
* because there was a data race!!!
* add documentations and remove assign op
* lint
* lint x2
* lol what have i done
* lint x3
* fix and disable gpu testing
* bugfix
* generic random walk
* reorg the random walk source code
* Update randomwalks.h
* Update randomwalks_cpu.cc
* rename file
* move internal function to anonymous ns
* reorg & docstrings
* constant restart probability
* docstring fix
* more commit
* random walk with restart, tested
* some fixes
* switch to using NDArray for choice
* massive fix & docstring
* lint x?
* lint x??
* fix
* export symbols
* skip gpu test
* addresses comments
* replaces another VecToIdArray
* add randomwalks.h to include
* replace void * with template
* moving heterograph index to another file
* node view
* python interfaces
* heterograph init
* bug fixes
* docstring for readonly
* more docstring
* unit tests & lint
* oops
* oops x2
* removed node/edge addition
* addressed comments
* lint
* rw on frames with one node/edge type
* homograph with underlying heterograph demo
* view is not necessary
* bugfix
* replace
* scheduler, builtins not working yet
* moving bipartite.h to header
* moving back bipartite to bipartite.h
* oops
* asbits and copyto for bipartite
* tested update_all and send_and_recv
* lightweight node & edge type retrieval
* oops
* sorry
* removing obsolete code
* oops
* lint
* various bug fixes & more tests
* UDF tests
* multiple type number_of_nodes and number_of_edges
* docstring fixes
* more tests
* going for dict in initialization
* lint
* updated api as per discussions
* lint
* bug
* bugfix
* moving back bipartite impl to cc
* note on views
* fix
* nonuniform sampler
* unit test
* test on out neighbors
* error checks
* lint
* fix
* clarification
* use macro switcher
* use empty array for uniform sampling
* oops
* Revert "oops"
This reverts commit a11f9ae707aaeb67fb5921c887a17d3711d5b04a.
* Revert "use empty array for uniform sampling"
This reverts commit 8526ce4cade89f2c1b09a08aca8830375ebafb31.
* re-reverting
* use a method
* rng refactor
* fix bugs
* unit test
* remove setsize
* lint
* fix test
* use explicit instantiation instead of inlining
* stricter test
* use tvm solution
* moved python interface to dgl.random
* lint
* address comments
* make getthreadid an inline function
* WIP: using object system for graph
* c++ side refactoring done; compiled
* remove stale apis
* fix bug in DGLGraphCreate; passed test_graph.py
* fix bug in python modify; passed utest for pytorch/cpu
* fix lint
* address comments
* copy graph index to shared memory.
* fix.
* fix.
* fix.
* use a diff name for in-csr and out-csr.
* fix lint.
* remove print.
* add test.
* add comments.
Quan Gan