93ac29ce34
[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph ( #1216 )
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* upd
* upd
* upd
* lint
* fix
* fix test
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd tutorial
* upd
* upd
* fix kg
* upd doc organization
* refresh test
* upd
* refactor doc
* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-05 18:03:57 +08:00
c23a61bd5c
fix s3 link ( #1310 )
2020-03-04 21:01:29 +08:00
3f0c10058a
[DGL-LifeSci] Fix broken links ( #1248 )
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* Fix
* Update
2020-02-08 18:42:51 +08:00
828a5e5bc6
[DGL-LifeSci] Migration and Refactor ( #1226 )
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* First commit
* Update
* Update splitters
* Update
* Update
* Update
* Update
* Update
* Update
* Migrate ACNN
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Finish classification
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Update
* Update
* trigger CI
* Fix CI
* Update
* Update
* Update
* Add default values
* Rename
* Update deprecation message
2020-02-04 01:38:09 +08:00
2ab4d0e10f
[Doc] Hotfix for README ( #1119 )
2019-12-23 19:22:38 +08:00
cf9ba90fd4
[Chem] ACNN and various utilities ( #1117 )
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* Add several splitting methods
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Finally
* CI
2019-12-19 11:54:40 +08:00
bc4f4352d1
[Chem Model Zoo] Hot fix for README ( #1071 )
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* Fix outdated example
* Hot fix
2019-12-05 14:37:06 +08:00
fdd0fe651d
hotfix ( #971 )
2019-11-04 12:11:53 +08:00
9a0511c8e9
[NN] nn modules & examples update ( #890 )
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* upd
* damn it
* fuck
* fuck pylint
* fudge
* remove some comments about MXNet
* upd
* upd
* damn it
* damn it
* fuck
* fuck
* upd
* upd
* pylint bastard
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
2019-11-03 17:29:42 -05:00
82499e602b
[Bug Fix] Fix package reliability bug of networkx ( #949 )
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* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test for mxnet TAGCov
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
* reproduce the bug
* Fix concurrency bug reported at #755 .
Also make test_shared_mem_store.py more deterministic.
* Update test_shared_mem_store.py
* Update dmlc/core
* networkx >= 2.4 will break our examples
* Update tutorials/requirements
* fix selfloop edges
* upd version
2019-10-29 23:34:31 -04:00
98c1448bfc
[Cleanup] Change Byte to Bool for training masks ( #954 )
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* Change Byte to Bool for training masks
* Check if module has Bool, otherwise use Byte
2019-10-29 17:14:08 -04:00
86cf154be9
[Misc] Update README(s) ( #962 )
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* Update
* Update
2019-10-29 15:37:25 +08:00
52c7ef49fc
[Model Zoo] AttentiveFP ( #955 )
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* Update
* Fix style
* Update
* Update
* Fix
* Update
* Update
2019-10-26 01:57:34 +08:00
577cf2e63b
[Model Zoo] Refactor and Add Utils for Chemistry ( #928 )
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* Refactor
* Add note
* Update
* CI
2019-10-22 00:47:45 +08:00
ae3102d3a2
[Dataset] Migration for Chemistry Datasets ( #926 )
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* Update
* Update
2019-10-21 16:38:28 +08:00
9df8cd3242
[Model Zoo] Fix JTNN ( #843 )
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* Update
* Update
* Update
* Update
* Update
2019-09-10 16:14:37 +08:00
189c2c0907
[Model Zoo] Refactor Model Zoo for Chemistry ( #839 )
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* Update
* Update
* Update
* Update fix
* Update
* Update
* Refactor
* Update
* Update
* Update
* Update
* Update
* Update
* Fix style
2019-09-07 20:01:09 +08:00
a9a0592c3e
Hot fix ( #816 )
2019-09-01 02:11:03 +08:00
1b5820a5d6
Fix ( #806 )
2019-08-29 01:18:04 +08:00
e590feeb62
[Model Zoo] GAT on Tox21 ( #793 )
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* GAT
* Fix mistake
* Fix
* hotfix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Fix style
* Hotfix
* Hotfix
* Hotfix
* Fix
* Fix
* Update
* CI trial
* Update
* Update
* Update
2019-08-28 04:47:16 +08:00
3192beb42d
[Model zoo] JTNN model zoo ( #790 )
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* jtnn model zoo
* poke ci
* fix line sep
* fix
* Fix import order
* fix render
* fix render
* revert
* fix
* Resolve conflict
* dix
* remove create_var
* refactor
* fix
* refactor
* readme
* format
* fix lint
* fix lint
* pylint
* lint
* fix lint
* fix lint
* add hint
* fix
* Remove vocab
* Add explanation for warning
* add directory
* Load model to cpu by default
* Update
2019-08-28 04:04:54 +08:00
331337fe5f
[Model Zoo] Clean up for Alchemy dataset ( #800 )
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* Make dataset framework agnostic
* Update
* Update
* Fix
* Remove unused import
2019-08-28 00:08:59 +08:00
9314aabd1f
[Refactor] Interface of nn modules ( #798 )
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* refactor
* upd mpnn
2019-08-27 22:29:25 +08:00
650f6ee1e0
[NN] Add commonly used GNN models from examples to dgl.nn modules. ( #748 )
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* gat
* upd
* upd sage
* upd
* upd
* upd
* upd
* upd
* add gmmconv
* upd ggnn
* upd
* upd
* upd
* upd
* add citation examples
* add README
* fix cheb
* improve doc
* formula
* upd
* trigger
* lint
* lint
* upd
* add test for transform
* add test
* check
* upd
* improve doc
* shape check
* upd
* densechebconv, currently not correct (?)
* fix cheb
* fix
* upd
* upd sgc-reddit
* upd
* trigger
2019-08-27 18:21:19 +08:00
8079d98617
Misc update ( #796 )
2019-08-27 16:08:36 +08:00
3bc73931f8
[Model Zoo] Molecule Regression ( #779 )
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* [Model] MPNN
* [Model] MPNN 🔨 reorganize the mpnn/sch/mgcn model & alchemy dataset
* [Model] MPNN alchemy dataloader refactoring
* [Model] Chem model zoo minor change
* [Model] Chem Model Zoo 🔥 remove old samples
* [Model Zoo] molecule regression minor change
* Fix dataset import
* Fix dataset import
* [Model Zoo] molecule regression test set
* [Model Zoo] molecule prediction MPNN model hyperparameter tuning
* [Model Zoo] molecule prediction ✏️ mpnn performance update
2019-08-26 17:42:33 +08:00
73b2668fe2
[Model Zoo] DGMG for molecule generation ( #783 )
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* DGMG for molecule generation
* Fix CI check
* Fix for CI
* Trial for CI due to shared memory
* Update
* Better interface for dataset configuration
* Update
* Handle corner cases
* Update README
* Fix
* Fix
* Fix
* Fix
* Fix
* Refactor
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Finallly
2019-08-26 03:39:20 +08:00
35bed2a9d0
Rename early stop ( #773 )
2019-08-18 13:46:44 +08:00
cd9fb7baa0
[Model Zoo] Refactor GCN on Tox21 ( #766 )
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* [Model zoo] Model zoo (#765 )
* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
* model zoo
* test
* markdown
* fix typo
* fix typo
* fix typo
* raise error
* fix lint
* remove unnecessary
* fix doc
* fix
* fix
* fix
* fix
* fix
* fix
* Update
* CI
* Fix
* Fix
* Fix
* Fix
* Fix
* CI
2019-08-16 02:49:25 +08:00
Zihao Ye