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Seth Hobson be57c0b2e3 feat: multi-harness plugin marketplace (Codex, Cursor, OpenCode, Gemini) (#541)
* feat(adapters): multi-harness framework + harness_portability eval dimension

Turn this Claude Code plugin marketplace into a generic agentic-harness
marketplace. Adapters under tools/adapters/ emit harness-native artifacts
for OpenAI Codex CLI, Cursor, OpenCode, and Gemini CLI from a single
Markdown source. Source-of-truth stays under plugins/ — Claude Code is
unchanged.

Framework (tools/adapters/):
- base.py — PluginSource parser, HarnessAdapter ABC, write/mirror helpers
  (path-traversal guard, UTF-8-safe), inline-list + block-list + block-scalar
  YAML-ish parser, _utf8_safe_cut, _split_inline_list, _normalize_author
- capabilities.py — per-harness capability matrix, TOOL_NAME_MAPS,
  MODEL_ALIASES, resolve_model() with explicit warnings
- codex.py — emits .codex/{skills,agents}/ + AGENTS.md (≤150-line
  table-of-contents). Fence-aware body splitter, _utf8_safe_cut for
  multibyte safety, _yaml_scalar with reserved-word + special-char quoting.
  Skill/command name collision detection (and second-order __cmd fallback).
- cursor.py — emits .cursor-plugin/{plugin,marketplace}.json + curated
  .cursor/rules/*.mdc. _validate_mdc_frontmatter handles YAML block scalars
  (no false positives on colons in description body). _normalize_author
  handles dict, npm-style strings, and author lists.
- opencode.py — transpiles agents to .opencode/agents/<id>.md with
  mode:subagent + permission: deny-everything-else block (skill/task always
  allowed as base capabilities — Claude's implicit defaults).
- gemini.py — emits native skills/, agents/, and commands/ at extension
  root (April 2026 spec). Tool-allowlist remapped via TOOL_NAME_MAPS.

CLI + tooling:
- tools/generate.py — unified `make generate HARNESS=<x> [PLUGIN=<y>]`,
  with --clean (containment-guarded; case-insensitive on Darwin/Win32),
  --prune (orphan removal across all per-harness output trees), --strict
  (warnings fail), per-plugin error aggregation, refuses --clean --plugin
  (would silently wipe other plugins' artifacts).
- tools/validate_generated.py — structural validation across all four
  harness outputs. Codex 8KB cap → error. _extract_permission_block
  correctly handles nested permission keys (column-0 only).
- tools/doc_gardener.py — recurring drift detection per OpenAI harness-
  engineering principle. STALE_ARTIFACT (info), DEAD_LINK (error),
  MARKETPLACE_ORPHAN (error), SKILL_OVER_CODEX_CAP (warning), grouped
  output sorted by severity.

plugin-eval (extends existing framework):
- New harness_portability dimension (6% weight, rebalanced from existing
  static sub-scores). Surfaces non-portable patterns with concrete
  remediation hints: SKILL_OVER_CODEX_CAP, CLAUDE_TOOL_REFS,
  CLAUDE_TOOL_PROSE, AGENT_NAME_COLLISION, BARE_MODEL_ALIAS.
- _CAMEL_TOOL_PATTERN requires Claude-tool context (no false positives
  on Rust's `Task` etc.). _TOOL_PROSE_PATTERN case-sensitive on tool
  names, case-insensitive on the leading article.
- Findings do NOT also feed anti_pattern_penalty (no double-counting).

Documentation:
- Top-level guides: CODEX.md, CURSOR.md, OPENCODE.md (≤150 lines each,
  table-of-contents pattern per OpenAI harness-engineering post)
- docs/harnesses.md — capability matrix, graceful-degradation table,
  generated output paths
- docs/authoring.md — portable-content style guide (tools, models,
  collision rules, fence-respect)
- docs/round-trip-results.md — real-CLI verification recipes (OpenCode
  discovers 193 subagents, Gemini extensions validate passes, Codex
  TOMLs all parse)
- CONTRIBUTING.md — new file pointing at docs/authoring.md
- README.md — rewritten for multi-harness (145 lines, was 460)
- CLAUDE.md — trimmed to 60-line table-of-contents
- GEMINI.md — trimmed from 1500 to 500 tokens (3× over budget previously)

Tests: 181 passing (103 plugin-eval + 78 tools/tests). Real-CLI round-trip
verified for OpenCode, Gemini, and Codex (TOML parses).

Replaces tools/generate_gemini_commands.py with the unified CLI.

* refactor(skills): extract detail to references/details.md (~75 skills)

Apply Anthropic's canonical SKILL.md progressive-disclosure pattern across
the marketplace: SKILL.md body becomes a navigation tier (trigger phrasing
+ quick start), detailed templates and worked examples move to
references/details.md (loaded on demand by the agent).

Motivation: OpenAI Codex CLI hard-truncates skills at 8 KB. Before this
change, ~90 skills exceeded that cap and would silently break on Codex.
The progressive-disclosure pattern is also Anthropic's documented
recommendation for token efficiency — Claude Code reads references/ files
on demand when the body navigation says to.

What's extracted, by pattern:
- Pass 1 (## Templates section): 19 skills — full template libraries
  moved to references/details.md
- Pass 2 (## Implementation Patterns / ## Advanced Patterns): 13 skills
- Pass 3 (everything between nav-tier and wrap-tier headings): 53 skills
- Conservative re-extraction for 8 skills that got over-reduced — kept
  ~6-7 KB inline (most of the quick-start tier) plus references/ overflow

What stays inline (SKILL.md navigation tier):
- description: frontmatter (triggering — unchanged for all skills)
- ## When to Use This Skill / ## Core Concepts / ## Quick Start
- ## Best Practices / ## Troubleshooting / ## See Also wrap-ups
- A pointer note ("see references/details.md") so the agent knows where
  to look for detail

What goes to references/details.md (detail tier, on-demand load):
- ## Templates (full code template libraries)
- ## Implementation Patterns / ## Advanced Patterns (deep examples)
- Mid-skill walkthroughs that exceed the inline budget

Also in this commit:
- plugins/brand-landingpage description trimmed from 958→543 chars
  (preserves trigger phrasing, drops verbose example-quote list)

Net effect:
- SKILL_OVER_CODEX_CAP findings: 90 → 10 (88% reduction)
- All triggers unchanged — discovery behavior identical across harnesses
- 75 new references/details.md files with the extracted content
- Same depth of guidance, loaded progressively

Remaining 10 oversized skills are complex multi-section docs (e.g.
postgresql, code-review-excellence, evaluation-methodology) that need
per-skill manual judgment — flagged by `make garden` for future work.

* chore: bump all plugin versions (multi-harness release)

Patch-bump every local plugin (81) in both .claude-plugin/marketplace.json
entries and each plugins/<name>/.claude-plugin/plugin.json. Minor-bump the
top-level marketplace metadata.version (1.6.0 → 1.7.0) to signal the
multi-harness adapter framework addition.

The external git-subdir entry (qa-orchestra) is unaffected — its version
is governed by its upstream repo.

* fix(opencode): preserve explicit tools:[] + word-boundary subtask match

Addresses two Codex review findings on PR #541.

## P1 — `tools: []` silently upgraded to permissive (privilege escalation)

Before: `_build_permission_block` returned `{}` for any empty list, which
omits the `permission:` block entirely from the emitted agent. An author
who explicitly wrote `tools: []` to lock down an advisory-only agent got
an UNRESTRICTED agent in OpenCode. Affected agent in this tree:
`plugins/arm-cortex-microcontrollers/agents/arm-cortex-expert.md`.

Fix: `_build_permission_block` now takes a `has_tools_field` flag so the
caller can distinguish "tools: key missing" (Claude default permissive)
from "tools: []" (explicit lock-down). The lock-down case emits a
deny-everything block that allows ONLY the base capabilities (skill, task)
that Claude Code always grants implicitly. Verified against the real
arm-cortex-expert agent — now emits read/edit/write/bash/grep/glob/list:
deny, task/skill: allow.

## P2 — `"agent" in cmd.body.lower()` false-positives on substrings

Before: a command body containing `PerformanceReviewAgent` (class name
in a code snippet) or `useragent` triggered `subtask: true`, changing
runtime behavior based on incidental text.

Fix: switch to a compiled word-boundary regex `\b(agent|subagent)s?\b`
(case-insensitive). Tests confirm the substring `PerformanceReviewAgent`
no longer fires, while a real "spawn a subagent" sentence still does.

## Tests

3 new regression tests in tools/tests/test_adapters.py:
- `test_explicit_empty_tools_yields_locked_permission_block` (P1)
- `test_missing_tools_field_yields_no_permission_block` (P1 boundary)
- `test_subtask_inference_word_boundary` (P2)

184 total tests pass (was 181). OpenCode round-trip still discovers all
193 subagents; arm-cortex-expert agent is now properly locked down.

* test: behavioral verification + CI gates for multi-harness pipeline

Adds three layers of automated verification that pure-Python parser tests
miss, plus the CI jobs that turn them into hard gates. Catches the kinds
of issues that previously only surfaced when a real user installed the
marketplace and tried to use it.

## test_real_world.py — real-source structural tests

Runs against the actual `plugins/` tree (not synthetic fixtures). Catches
issues that only appear on real content:

- every marketplace entry resolves to a plugins/<name>/ dir
- every local plugin dir appears in marketplace.json
- marketplace.json version == per-plugin plugin.json version (catches drift)
- every plugin loads via load_plugin() without error
- no plugin name contains `__` (adapter namespace separator)
- every agent has name + description; every skill has a trigger phrase
  (same regex plugin_eval's MISSING_TRIGGER check uses)
- no agent name collides with Codex built-ins
- every refactored skill (with `references/details.md`) has:
  - meaningful detail content (>=500 B in details.md)
  - a pointer to references/ in the SKILL.md body
  - a navigation-tier heading preserved (When to Use, Overview, etc.)
  - body >= 600 B (not a stub)
- every plugin.json has name + version matching the dir

This test pass found and fixed three real defects before commit:
- ship-mate/skills/scan: description had no trigger phrase ("Use when…")
- reverse-engineering/skills/memory-forensics: nav-tier section lost
  during extraction
- reverse-engineering/skills/binary-analysis-patterns: same

All three are now fixed (preserved trigger phrasing, added When-to-Use
sections back to the skills my extraction over-trimmed).

## test_round_trip.py — generate→parse→verify

CI runs this AFTER `make generate-all`. Catches generation-time regressions:

- OpenCode/Codex/Gemini agent counts match source agent count (no skips)
- every Codex SKILL.md under 8 KB (the cap that would silently truncate)
- every Codex agent TOML has required fields + valid sandbox_mode
- every OpenCode agent has mode in {primary,subagent,all} and
  provider-prefixed model
- locked agents (source `tools: []`) emit proper deny-everything permission
  block with skill/task allow (regression guard for PR-541 P1)
- every Gemini @{path} injection resolves to a real source file
- every Gemini command TOML has prompt + {{args}} placeholder
- every context file (CLAUDE.md, AGENTS.md, GEMINI.md, etc.) within
  150-line cap
- Cursor marketplace + per-plugin manifests cover all local plugins
- .cursor/rules/*.mdc only use the 3 documented frontmatter keys

## test_cli_smoke.py — real-CLI subprocess tests

Invokes the actual harness binaries (OpenCode, Gemini, Codex, Claude Code)
against the generated artifacts. Catches CLI-level issues pure-Python
parsing can't see: schema-loader drift, plugin-discovery bugs, version
incompatibilities.

- `opencode agent list` — must succeed AND discover every source agent
  (currently 191 + 2 OpenCode built-ins)
- `gemini extensions validate <repo>` — must return success
- `codex doctor` — must report healthy install
- every Codex agent TOML must parse with stdlib `tomllib`
- `claude --version` — sanity check the Claude Code CLI loads
- marketplace.json must have owner + metadata.version for Claude Code's loader

Per-CLI tests skip gracefully when the binary isn't on PATH, so local
devs only exercise what they have installed. CI installs OpenCode +
Gemini and turns those skips into hard gates.

## Makefile + CI

- `make test` — full pytest suite (plugin-eval + tools/tests/)
- `make smoke-test` — generates if needed, then runs real-CLI smoke tests
- `.github/workflows/validate.yml` extended with:
  - `tools-tests` job — runs pytest tools/tests/
  - `multi-harness-generate` job — `make generate-all && make validate
    STRICT=1 && make garden`, uploads generated artifacts on every run
  - `cli-smoke-test` job — installs OpenCode + Gemini, runs test_cli_smoke.py

## Test counts

- Before: 184 tests
- After: 386 tests (parameterized real-source tests over all 82 plugins)
- All passing locally on OpenCode 1.15.7 + Gemini 0.42.0 + Codex 0.133.0
  + Claude Code 2.1.148
2026-05-22 08:18:21 -04:00

6.7 KiB

sql-optimization-patterns — detailed patterns and worked examples

Optimization Patterns

Pattern 1: Eliminate N+1 Queries

Problem: N+1 Query Anti-Pattern

# Bad: Executes N+1 queries
users = db.query("SELECT * FROM users LIMIT 10")
for user in users:
    orders = db.query("SELECT * FROM orders WHERE user_id = ?", user.id)
    # Process orders

Solution: Use JOINs or Batch Loading

-- Solution 1: JOIN
SELECT
    u.id, u.name,
    o.id as order_id, o.total
FROM users u
LEFT JOIN orders o ON u.id = o.user_id
WHERE u.id IN (1, 2, 3, 4, 5);

-- Solution 2: Batch query
SELECT * FROM orders
WHERE user_id IN (1, 2, 3, 4, 5);
# Good: Single query with JOIN or batch load
# Using JOIN
results = db.query("""
    SELECT u.id, u.name, o.id as order_id, o.total
    FROM users u
    LEFT JOIN orders o ON u.id = o.user_id
    WHERE u.id IN (1, 2, 3, 4, 5)
""")

# Or batch load
users = db.query("SELECT * FROM users LIMIT 10")
user_ids = [u.id for u in users]
orders = db.query(
    "SELECT * FROM orders WHERE user_id IN (?)",
    user_ids
)
# Group orders by user_id
orders_by_user = {}
for order in orders:
    orders_by_user.setdefault(order.user_id, []).append(order)

Pattern 2: Optimize Pagination

Bad: OFFSET on Large Tables

-- Slow for large offsets
SELECT * FROM users
ORDER BY created_at DESC
LIMIT 20 OFFSET 100000;  -- Very slow!

Good: Cursor-Based Pagination

-- Much faster: Use cursor (last seen ID)
SELECT * FROM users
WHERE created_at < '2024-01-15 10:30:00'  -- Last cursor
ORDER BY created_at DESC
LIMIT 20;

-- With composite sorting
SELECT * FROM users
WHERE (created_at, id) < ('2024-01-15 10:30:00', 12345)
ORDER BY created_at DESC, id DESC
LIMIT 20;

-- Requires index
CREATE INDEX idx_users_cursor ON users(created_at DESC, id DESC);

Pattern 3: Aggregate Efficiently

Optimize COUNT Queries:

-- Bad: Counts all rows
SELECT COUNT(*) FROM orders;  -- Slow on large tables

-- Good: Use estimates for approximate counts
SELECT reltuples::bigint AS estimate
FROM pg_class
WHERE relname = 'orders';

-- Good: Filter before counting
SELECT COUNT(*) FROM orders
WHERE created_at > NOW() - INTERVAL '7 days';

-- Better: Use index-only scan
CREATE INDEX idx_orders_created ON orders(created_at);
SELECT COUNT(*) FROM orders
WHERE created_at > NOW() - INTERVAL '7 days';

Optimize GROUP BY:

-- Bad: Group by then filter
SELECT user_id, COUNT(*) as order_count
FROM orders
GROUP BY user_id
HAVING COUNT(*) > 10;

-- Better: Filter first, then group (if possible)
SELECT user_id, COUNT(*) as order_count
FROM orders
WHERE status = 'completed'
GROUP BY user_id
HAVING COUNT(*) > 10;

-- Best: Use covering index
CREATE INDEX idx_orders_user_status ON orders(user_id, status);

Pattern 4: Subquery Optimization

Transform Correlated Subqueries:

-- Bad: Correlated subquery (runs for each row)
SELECT u.name, u.email,
    (SELECT COUNT(*) FROM orders o WHERE o.user_id = u.id) as order_count
FROM users u;

-- Good: JOIN with aggregation
SELECT u.name, u.email, COUNT(o.id) as order_count
FROM users u
LEFT JOIN orders o ON o.user_id = u.id
GROUP BY u.id, u.name, u.email;

-- Better: Use window functions
SELECT DISTINCT ON (u.id)
    u.name, u.email,
    COUNT(o.id) OVER (PARTITION BY u.id) as order_count
FROM users u
LEFT JOIN orders o ON o.user_id = u.id;

Use CTEs for Clarity:

-- Using Common Table Expressions
WITH recent_users AS (
    SELECT id, name, email
    FROM users
    WHERE created_at > NOW() - INTERVAL '30 days'
),
user_order_counts AS (
    SELECT user_id, COUNT(*) as order_count
    FROM orders
    WHERE created_at > NOW() - INTERVAL '30 days'
    GROUP BY user_id
)
SELECT ru.name, ru.email, COALESCE(uoc.order_count, 0) as orders
FROM recent_users ru
LEFT JOIN user_order_counts uoc ON ru.id = uoc.user_id;

Pattern 5: Batch Operations

Batch INSERT:

-- Bad: Multiple individual inserts
INSERT INTO users (name, email) VALUES ('Alice', 'alice@example.com');
INSERT INTO users (name, email) VALUES ('Bob', 'bob@example.com');
INSERT INTO users (name, email) VALUES ('Carol', 'carol@example.com');

-- Good: Batch insert
INSERT INTO users (name, email) VALUES
    ('Alice', 'alice@example.com'),
    ('Bob', 'bob@example.com'),
    ('Carol', 'carol@example.com');

-- Better: Use COPY for bulk inserts (PostgreSQL)
COPY users (name, email) FROM '/tmp/users.csv' CSV HEADER;

Batch UPDATE:

-- Bad: Update in loop
UPDATE users SET status = 'active' WHERE id = 1;
UPDATE users SET status = 'active' WHERE id = 2;
-- ... repeat for many IDs

-- Good: Single UPDATE with IN clause
UPDATE users
SET status = 'active'
WHERE id IN (1, 2, 3, 4, 5, ...);

-- Better: Use temporary table for large batches
CREATE TEMP TABLE temp_user_updates (id INT, new_status VARCHAR);
INSERT INTO temp_user_updates VALUES (1, 'active'), (2, 'active'), ...;

UPDATE users u
SET status = t.new_status
FROM temp_user_updates t
WHERE u.id = t.id;

Advanced Techniques

Materialized Views

Pre-compute expensive queries.

-- Create materialized view
CREATE MATERIALIZED VIEW user_order_summary AS
SELECT
    u.id,
    u.name,
    COUNT(o.id) as total_orders,
    SUM(o.total) as total_spent,
    MAX(o.created_at) as last_order_date
FROM users u
LEFT JOIN orders o ON u.id = o.user_id
GROUP BY u.id, u.name;

-- Add index to materialized view
CREATE INDEX idx_user_summary_spent ON user_order_summary(total_spent DESC);

-- Refresh materialized view
REFRESH MATERIALIZED VIEW user_order_summary;

-- Concurrent refresh (PostgreSQL)
REFRESH MATERIALIZED VIEW CONCURRENTLY user_order_summary;

-- Query materialized view (very fast)
SELECT * FROM user_order_summary
WHERE total_spent > 1000
ORDER BY total_spent DESC;

Partitioning

Split large tables for better performance.

-- Range partitioning by date (PostgreSQL)
CREATE TABLE orders (
    id SERIAL,
    user_id INT,
    total DECIMAL,
    created_at TIMESTAMP
) PARTITION BY RANGE (created_at);

-- Create partitions
CREATE TABLE orders_2024_q1 PARTITION OF orders
    FOR VALUES FROM ('2024-01-01') TO ('2024-04-01');

CREATE TABLE orders_2024_q2 PARTITION OF orders
    FOR VALUES FROM ('2024-04-01') TO ('2024-07-01');

-- Queries automatically use appropriate partition
SELECT * FROM orders
WHERE created_at BETWEEN '2024-02-01' AND '2024-02-28';
-- Only scans orders_2024_q1 partition

Query Hints and Optimization

-- Force index usage (MySQL)
SELECT * FROM users
USE INDEX (idx_users_email)
WHERE email = 'user@example.com';

-- Parallel query (PostgreSQL)
SET max_parallel_workers_per_gather = 4;
SELECT * FROM large_table WHERE condition;

-- Join hints (PostgreSQL)
SET enable_nestloop = OFF;  -- Force hash or merge join