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Hongzhi (Steve), Chen 704bcaf6dd examples (#5323)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
2023-02-19 08:35:15 +08:00

153 行
6.1 KiB
Python

import dgl
import dgl.function as fn
import dgl.nn as dglnn
import numpy as np
import torch
import torch.nn as nn
from dgl.base import DGLError
from dgl.nn.functional import edge_softmax
class WeightedGATConv(dglnn.GATConv):
"""
This model inherit from dgl GATConv for traffic prediction task,
it add edge weight when aggregating the node feature.
"""
def forward(self, graph, feat, get_attention=False):
with graph.local_scope():
if not self._allow_zero_in_degree:
if (graph.in_degrees() == 0).any():
raise DGLError(
"There are 0-in-degree nodes in the graph, "
"output for those nodes will be invalid. "
"This is harmful for some applications, "
"causing silent performance regression. "
"Adding self-loop on the input graph by "
"calling `g = dgl.add_self_loop(g)` will resolve "
"the issue. Setting ``allow_zero_in_degree`` "
"to be `True` when constructing this module will "
"suppress the check and let the code run."
)
if isinstance(feat, tuple):
h_src = self.feat_drop(feat[0])
h_dst = self.feat_drop(feat[1])
if not hasattr(self, "fc_src"):
feat_src = self.fc(h_src).view(
-1, self._num_heads, self._out_feats
)
feat_dst = self.fc(h_dst).view(
-1, self._num_heads, self._out_feats
)
else:
feat_src = self.fc_src(h_src).view(
-1, self._num_heads, self._out_feats
)
feat_dst = self.fc_dst(h_dst).view(
-1, self._num_heads, self._out_feats
)
else:
h_src = h_dst = self.feat_drop(feat)
feat_src = feat_dst = self.fc(h_src).view(
-1, self._num_heads, self._out_feats
)
if graph.is_block:
feat_dst = feat_src[: graph.number_of_dst_nodes()]
# NOTE: GAT paper uses "first concatenation then linear projection"
# to compute attention scores, while ours is "first projection then
# addition", the two approaches are mathematically equivalent:
# We decompose the weight vector a mentioned in the paper into
# [a_l || a_r], then
# a^T [Wh_i || Wh_j] = a_l Wh_i + a_r Wh_j
# Our implementation is much efficient because we do not need to
# save [Wh_i || Wh_j] on edges, which is not memory-efficient. Plus,
# addition could be optimized with DGL's built-in function u_add_v,
# which further speeds up computation and saves memory footprint.
el = (feat_src * self.attn_l).sum(dim=-1).unsqueeze(-1)
er = (feat_dst * self.attn_r).sum(dim=-1).unsqueeze(-1)
graph.srcdata.update({"ft": feat_src, "el": el})
graph.dstdata.update({"er": er})
# compute edge attention, el and er are a_l Wh_i and a_r Wh_j respectively.
graph.apply_edges(fn.u_add_v("el", "er", "e"))
e = self.leaky_relu(graph.edata.pop("e"))
# compute softmax
graph.edata["a"] = self.attn_drop(edge_softmax(graph, e))
# compute weighted attention
graph.edata["a"] = (
graph.edata["a"].permute(1, 2, 0) * graph.edata["weight"]
).permute(2, 0, 1)
# message passing
graph.update_all(fn.u_mul_e("ft", "a", "m"), fn.sum("m", "ft"))
rst = graph.dstdata["ft"]
# residual
if self.res_fc is not None:
resval = self.res_fc(h_dst).view(
h_dst.shape[0], -1, self._out_feats
)
rst = rst + resval
# activation
if self.activation:
rst = self.activation(rst)
if get_attention:
return rst, graph.edata["a"]
else:
return rst
class GatedGAT(nn.Module):
"""Gated Graph Attention module, it is a general purpose
graph attention module proposed in paper GaAN. The paper use
it for traffic prediction task
Parameter
==========
in_feats : int
number of input feature
out_feats : int
number of output feature
map_feats : int
intermediate feature size for gate computation
num_heads : int
number of head for multihead attention
"""
def __init__(self, in_feats, out_feats, map_feats, num_heads):
super(GatedGAT, self).__init__()
self.in_feats = in_feats
self.out_feats = out_feats
self.map_feats = map_feats
self.num_heads = num_heads
self.gatlayer = WeightedGATConv(
self.in_feats, self.out_feats, self.num_heads
)
self.gate_fn = nn.Linear(
2 * self.in_feats + self.map_feats, self.num_heads
)
self.gate_m = nn.Linear(self.in_feats, self.map_feats)
self.merger_layer = nn.Linear(
self.in_feats + self.out_feats, self.out_feats
)
def forward(self, g, x):
with g.local_scope():
g.ndata["x"] = x
g.ndata["z"] = self.gate_m(x)
g.update_all(fn.copy_u("x", "x"), fn.mean("x", "mean_z"))
g.update_all(fn.copy_u("z", "z"), fn.max("z", "max_z"))
nft = torch.cat(
[g.ndata["x"], g.ndata["max_z"], g.ndata["mean_z"]], dim=1
)
gate = self.gate_fn(nft).sigmoid()
attn_out = self.gatlayer(g, x)
node_num = g.num_nodes()
gated_out = (
(gate.view(-1) * attn_out.view(-1, self.out_feats).T).T
).view(node_num, self.num_heads, self.out_feats)
gated_out = gated_out.mean(1)
merge = self.merger_layer(torch.cat([x, gated_out], dim=1))
return merge