dmlc--dgl
210 行
7.4 KiB
Python
210 行
7.4 KiB
Python
"""Graph Bolt DataLoaders"""
|
|
|
|
from concurrent.futures import ThreadPoolExecutor
|
|
|
|
import torch
|
|
import torch.utils.data
|
|
import torchdata.dataloader2.graph as dp_utils
|
|
import torchdata.datapipes as dp
|
|
|
|
from .base import CopyTo
|
|
from .feature_fetcher import FeatureFetcher
|
|
from .impl.neighbor_sampler import SamplePerLayer
|
|
|
|
from .internal import datapipe_graph_to_adjlist
|
|
from .item_sampler import ItemSampler
|
|
|
|
|
|
__all__ = [
|
|
"DataLoader",
|
|
]
|
|
|
|
|
|
def _find_and_wrap_parent(datapipe_graph, target_datapipe, wrapper, **kwargs):
|
|
"""Find parent of target_datapipe and wrap it with ."""
|
|
datapipes = dp_utils.find_dps(
|
|
datapipe_graph,
|
|
target_datapipe,
|
|
)
|
|
datapipe_adjlist = datapipe_graph_to_adjlist(datapipe_graph)
|
|
for datapipe in datapipes:
|
|
datapipe_id = id(datapipe)
|
|
for parent_datapipe_id in datapipe_adjlist[datapipe_id][1]:
|
|
parent_datapipe, _ = datapipe_adjlist[parent_datapipe_id]
|
|
datapipe_graph = dp_utils.replace_dp(
|
|
datapipe_graph,
|
|
parent_datapipe,
|
|
wrapper(parent_datapipe, **kwargs),
|
|
)
|
|
return datapipe_graph
|
|
|
|
|
|
class MultiprocessingWrapper(dp.iter.IterDataPipe):
|
|
"""Wraps a datapipe with multiprocessing.
|
|
|
|
Parameters
|
|
----------
|
|
datapipe : DataPipe
|
|
The data pipeline.
|
|
num_workers : int, optional
|
|
The number of worker processes. Default is 0, meaning that there
|
|
will be no multiprocessing.
|
|
persistent_workers : bool, optional
|
|
If True, the data loader will not shut down the worker processes after a
|
|
dataset has been consumed once. This allows to maintain the workers
|
|
instances alive.
|
|
"""
|
|
|
|
def __init__(self, datapipe, num_workers=0, persistent_workers=True):
|
|
self.datapipe = datapipe
|
|
self.dataloader = torch.utils.data.DataLoader(
|
|
datapipe,
|
|
batch_size=None,
|
|
num_workers=num_workers,
|
|
persistent_workers=(num_workers > 0) and persistent_workers,
|
|
)
|
|
|
|
def __iter__(self):
|
|
yield from self.dataloader
|
|
|
|
|
|
# There needs to be a single instance of the uva_stream, if it is created
|
|
# multiple times, it leads to multiple CUDA memory pools and memory leaks.
|
|
def _get_uva_stream():
|
|
if not hasattr(_get_uva_stream, "stream"):
|
|
_get_uva_stream.stream = torch.cuda.Stream(priority=-1)
|
|
return _get_uva_stream.stream
|
|
|
|
|
|
class DataLoader(torch.utils.data.DataLoader):
|
|
"""Multiprocessing DataLoader.
|
|
|
|
Iterates over the data pipeline with everything before feature fetching
|
|
(i.e. :class:`dgl.graphbolt.FeatureFetcher`) in subprocesses, and
|
|
everything after feature fetching in the main process. The datapipe
|
|
is modified in-place as a result.
|
|
|
|
When the copy_to operation is placed earlier in the data pipeline, the
|
|
num_workers argument is required to be 0 as utilizing CUDA in multiple
|
|
worker processes is not supported.
|
|
|
|
Parameters
|
|
----------
|
|
datapipe : DataPipe
|
|
The data pipeline.
|
|
num_workers : int, optional
|
|
Number of worker processes. Default is 0.
|
|
persistent_workers : bool, optional
|
|
If True, the data loader will not shut down the worker processes after a
|
|
dataset has been consumed once. This allows to maintain the workers
|
|
instances alive.
|
|
overlap_feature_fetch : bool, optional
|
|
If True, the data loader will overlap the UVA feature fetcher operations
|
|
with the rest of operations by using an alternative CUDA stream. Default
|
|
is True.
|
|
overlap_graph_fetch : bool, optional
|
|
If True, the data loader will overlap the UVA graph fetching operations
|
|
with the rest of operations by using an alternative CUDA stream. Default
|
|
is False.
|
|
max_uva_threads : int, optional
|
|
Limits the number of CUDA threads used for UVA copies so that the rest
|
|
of the computations can run simultaneously with it. Setting it to a too
|
|
high value will limit the amount of overlap while setting it too low may
|
|
cause the PCI-e bandwidth to not get fully utilized. Manually tuned
|
|
default is 6144, meaning around 3-4 Streaming Multiprocessors.
|
|
"""
|
|
|
|
def __init__(
|
|
self,
|
|
datapipe,
|
|
num_workers=0,
|
|
persistent_workers=True,
|
|
overlap_feature_fetch=True,
|
|
overlap_graph_fetch=False,
|
|
max_uva_threads=6144,
|
|
):
|
|
# Multiprocessing requires two modifications to the datapipe:
|
|
#
|
|
# 1. Insert a stage after ItemSampler to distribute the
|
|
# minibatches evenly across processes.
|
|
# 2. Cut the datapipe at FeatureFetcher, and wrap the inner datapipe
|
|
# of the FeatureFetcher with a multiprocessing PyTorch DataLoader.
|
|
|
|
datapipe = datapipe.mark_end()
|
|
datapipe_graph = dp_utils.traverse_dps(datapipe)
|
|
|
|
# (1) Insert minibatch distribution.
|
|
# TODO(BarclayII): Currently I'm using sharding_filter() as a
|
|
# concept demonstration. Later on minibatch distribution should be
|
|
# merged into ItemSampler to maximize efficiency.
|
|
item_samplers = dp_utils.find_dps(
|
|
datapipe_graph,
|
|
ItemSampler,
|
|
)
|
|
for item_sampler in item_samplers:
|
|
datapipe_graph = dp_utils.replace_dp(
|
|
datapipe_graph,
|
|
item_sampler,
|
|
item_sampler.sharding_filter(),
|
|
)
|
|
|
|
# (2) Cut datapipe at FeatureFetcher and wrap.
|
|
datapipe_graph = _find_and_wrap_parent(
|
|
datapipe_graph,
|
|
FeatureFetcher,
|
|
MultiprocessingWrapper,
|
|
num_workers=num_workers,
|
|
persistent_workers=persistent_workers,
|
|
)
|
|
|
|
# (3) Overlap UVA feature fetching by buffering and using an alternative
|
|
# stream.
|
|
if (
|
|
overlap_feature_fetch
|
|
and num_workers == 0
|
|
and torch.cuda.is_available()
|
|
):
|
|
torch.ops.graphbolt.set_max_uva_threads(max_uva_threads)
|
|
feature_fetchers = dp_utils.find_dps(
|
|
datapipe_graph,
|
|
FeatureFetcher,
|
|
)
|
|
for feature_fetcher in feature_fetchers:
|
|
feature_fetcher.stream = _get_uva_stream()
|
|
datapipe_graph = dp_utils.replace_dp(
|
|
datapipe_graph,
|
|
feature_fetcher,
|
|
feature_fetcher.buffer(1).wait(),
|
|
)
|
|
|
|
if (
|
|
overlap_graph_fetch
|
|
and num_workers == 0
|
|
and torch.cuda.is_available()
|
|
):
|
|
torch.ops.graphbolt.set_max_uva_threads(max_uva_threads)
|
|
samplers = dp_utils.find_dps(
|
|
datapipe_graph,
|
|
SamplePerLayer,
|
|
)
|
|
executor = ThreadPoolExecutor(max_workers=1)
|
|
for sampler in samplers:
|
|
datapipe_graph = dp_utils.replace_dp(
|
|
datapipe_graph,
|
|
sampler,
|
|
sampler.fetch_and_sample(_get_uva_stream(), executor, 1),
|
|
)
|
|
|
|
# (4) Cut datapipe at CopyTo and wrap with prefetcher. This enables the
|
|
# data pipeline up to the CopyTo operation to run in a separate thread.
|
|
datapipe_graph = _find_and_wrap_parent(
|
|
datapipe_graph,
|
|
CopyTo,
|
|
dp.iter.Prefetcher,
|
|
buffer_size=2,
|
|
)
|
|
|
|
# The stages after feature fetching is still done in the main process.
|
|
# So we set num_workers to 0 here.
|
|
super().__init__(datapipe, batch_size=None, num_workers=0)
|