项目文件夹

文件
Minjie Wang 44089c8b4d [Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:30:41 +08:00

153 行
5.1 KiB
Python

import torch
torch.backends.cudnn.enabled = False
import torch.nn as nn
import torch.nn.functional as F
import torch.optim as optim
from torch.utils.data import DataLoader
import dgl
from dgl.data.utils import download, get_download_dir
from functools import partial
import tqdm
import urllib
import os
import argparse
# from dataset import ModelNet
import provider
from ModelNetDataLoader import ModelNetDataLoader
from pointnet_cls import PointNetCls
from pointnet2 import PointNet2SSGCls, PointNet2MSGCls
parser = argparse.ArgumentParser()
parser.add_argument('--model', type=str, default='pointnet')
parser.add_argument('--dataset-path', type=str, default='')
parser.add_argument('--load-model-path', type=str, default='')
parser.add_argument('--save-model-path', type=str, default='')
parser.add_argument('--num-epochs', type=int, default=200)
parser.add_argument('--num-workers', type=int, default=8)
parser.add_argument('--batch-size', type=int, default=32)
args = parser.parse_args()
num_workers = args.num_workers
batch_size = args.batch_size
data_filename = 'modelnet40_normal_resampled.zip'
download_path = os.path.join(get_download_dir(), data_filename)
local_path = args.dataset_path or os.path.join(get_download_dir(), 'modelnet40_normal_resampled')
if not os.path.exists(local_path):
download('https://shapenet.cs.stanford.edu/media/modelnet40_normal_resampled.zip',
download_path, verify_ssl=False)
from zipfile import ZipFile
with ZipFile(download_path) as z:
z.extractall(path=get_download_dir())
CustomDataLoader = partial(
DataLoader,
num_workers=num_workers,
batch_size=batch_size,
shuffle=True,
drop_last=True)
def train(net, opt, scheduler, train_loader, dev):
net.train()
total_loss = 0
num_batches = 0
total_correct = 0
count = 0
loss_f = nn.CrossEntropyLoss()
with tqdm.tqdm(train_loader, ascii=True) as tq:
for data, label in tq:
data = data.data.numpy()
data = provider.random_point_dropout(data)
data[:, :, 0:3] = provider.random_scale_point_cloud(data[:, :, 0:3])
data[:, :, 0:3] = provider.jitter_point_cloud(data[:, :, 0:3])
data[:, :, 0:3] = provider.shift_point_cloud(data[:, :, 0:3])
data = torch.tensor(data)
label = label[:, 0]
num_examples = label.shape[0]
data, label = data.to(dev), label.to(dev).squeeze().long()
opt.zero_grad()
logits = net(data)
loss = loss_f(logits, label)
loss.backward()
opt.step()
_, preds = logits.max(1)
num_batches += 1
count += num_examples
loss = loss.item()
correct = (preds == label).sum().item()
total_loss += loss
total_correct += correct
tq.set_postfix({
'AvgLoss': '%.5f' % (total_loss / num_batches),
'AvgAcc': '%.5f' % (total_correct / count)})
scheduler.step()
def evaluate(net, test_loader, dev):
net.eval()
total_correct = 0
count = 0
with torch.no_grad():
with tqdm.tqdm(test_loader, ascii=True) as tq:
for data, label in tq:
label = label[:,0]
num_examples = label.shape[0]
data, label = data.to(dev), label.to(dev).squeeze().long()
logits = net(data)
_, preds = logits.max(1)
correct = (preds == label).sum().item()
total_correct += correct
count += num_examples
tq.set_postfix({
'AvgAcc': '%.5f' % (total_correct / count)})
return total_correct / count
dev = torch.device("cuda" if torch.cuda.is_available() else "cpu")
if args.model == 'pointnet':
net = PointNetCls(40, input_dims=6)
elif args.model == 'pointnet2_ssg':
net = PointNet2SSGCls(40, batch_size, input_dims=6)
elif args.model == 'pointnet2_msg':
net = PointNet2MSGCls(40, batch_size, input_dims=6)
net = net.to(dev)
if args.load_model_path:
net.load_state_dict(torch.load(args.load_model_path, map_location=dev))
opt = optim.Adam(net.parameters(), lr=1e-3, weight_decay=1e-4)
scheduler = optim.lr_scheduler.StepLR(opt, step_size=20, gamma=0.7)
train_dataset = ModelNetDataLoader(local_path, 1024, split='train')
test_dataset = ModelNetDataLoader(local_path, 1024, split='test')
train_loader = torch.utils.data.DataLoader(train_dataset, batch_size=batch_size, shuffle=True, num_workers=num_workers, drop_last=True)
test_loader = torch.utils.data.DataLoader(test_dataset, batch_size=batch_size, shuffle=False, num_workers=num_workers, drop_last=True)
best_test_acc = 0
for epoch in range(args.num_epochs):
train(net, opt, scheduler, train_loader, dev)
if (epoch + 1) % 1 == 0:
print('Epoch #%d Testing' % epoch)
test_acc = evaluate(net, test_loader, dev)
if test_acc > best_test_acc:
best_test_acc = test_acc
if args.save_model_path:
torch.save(net.state_dict(), args.save_model_path)
print('Current test acc: %.5f (best: %.5f)' % (
test_acc, best_test_acc))