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Chang Liu 6e1be69a84 [Example][Refactor] Refactor GAT example (#4240)
* Refactor gat example

* Add ppi support

* Minor update

* Update

* Update

* Change valid_xxx to val_xxx

* Readme Update

* Update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
2022-07-22 16:48:46 +08:00

93 行
3.4 KiB
Python

import torch
import torch.nn as nn
import torch.nn.functional as F
import dgl.nn as dglnn
from dgl.data import CoraGraphDataset, CiteseerGraphDataset, PubmedGraphDataset
from dgl import AddSelfLoop
import argparse
class GAT(nn.Module):
def __init__(self,in_size, hid_size, out_size, heads):
super().__init__()
self.gat_layers = nn.ModuleList()
# two-layer GAT
self.gat_layers.append(dglnn.GATConv(in_size, hid_size, heads[0], feat_drop=0.6, attn_drop=0.6, activation=F.elu))
self.gat_layers.append(dglnn.GATConv(hid_size*heads[0], out_size, heads[1], feat_drop=0.6, attn_drop=0.6, activation=None))
def forward(self, g, inputs):
h = inputs
for i, layer in enumerate(self.gat_layers):
h = layer(g, h)
if i == 1: # last layer
h = h.mean(1)
else: # other layer(s)
h = h.flatten(1)
return h
def evaluate(g, features, labels, mask, model):
model.eval()
with torch.no_grad():
logits = model(g, features)
logits = logits[mask]
labels = labels[mask]
_, indices = torch.max(logits, dim=1)
correct = torch.sum(indices == labels)
return correct.item() * 1.0 / len(labels)
def train(g, features, labels, masks, model):
# define train/val samples, loss function and optimizer
train_mask = masks[0]
val_mask = masks[1]
loss_fcn = nn.CrossEntropyLoss()
optimizer = torch.optim.Adam(model.parameters(), lr=5e-3, weight_decay=5e-4)
#training loop
for epoch in range(200):
model.train()
logits = model(g, features)
loss = loss_fcn(logits[train_mask], labels[train_mask])
optimizer.zero_grad()
loss.backward()
optimizer.step()
acc = evaluate(g, features, labels, val_mask, model)
print("Epoch {:05d} | Loss {:.4f} | Accuracy {:.4f} "
. format(epoch, loss.item(), acc))
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument("--dataset", type=str, default="cora",
help="Dataset name ('cora', 'citeseer', 'pubmed').")
args = parser.parse_args()
print(f'Training with DGL built-in GATConv module.')
# load and preprocess dataset
transform = AddSelfLoop() # by default, it will first remove self-loops to prevent duplication
if args.dataset == 'cora':
data = CoraGraphDataset(transform=transform)
elif args.dataset == 'citeseer':
data = CiteseerGraphDataset(transform=transform)
elif args.dataset == 'pubmed':
data = PubmedGraphDataset(transform=transform)
else:
raise ValueError('Unknown dataset: {}'.format(args.dataset))
g = data[0]
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
g = g.int().to(device)
features = g.ndata['feat']
labels = g.ndata['label']
masks = g.ndata['train_mask'], g.ndata['val_mask'], g.ndata['test_mask']
# create GAT model
in_size = features.shape[1]
out_size = data.num_classes
model = GAT(in_size, 8, out_size, heads=[8,1]).to(device)
# model training
print('Training...')
train(g, features, labels, masks, model)
# test the model
print('Testing...')
acc = evaluate(g, features, labels, masks[2], model)
print("Test accuracy {:.4f}".format(acc))