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Mufei Li 6a91d18151 [DGL-Go] Graph Property Prediction Pipeline (#3927)
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2022-06-04 15:43:34 +08:00

241 行
6.4 KiB
Python

import dgl
import pytest
import torch
from dglgo.model import *
from test_utils.graph_cases import get_cases
@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
def test_gcn(g):
data_info = {
'num_nodes': g.num_nodes(),
'out_size': 7
}
node_feat = None
edge_feat = g.edata['scalar_w']
# node embedding + not use_edge_weight
model = GCN(data_info, embed_size=10, use_edge_weight=False)
model(g, node_feat)
# node embedding + use_edge_weight
model = GCN(data_info, embed_size=10, use_edge_weight=True)
model(g, node_feat, edge_feat)
data_info['in_size'] = g.ndata['h'].shape[-1]
node_feat = g.ndata['h']
# node feat + not use_edge_weight
model = GCN(data_info, embed_size=-1, use_edge_weight=False)
model(g, node_feat)
# node feat + use_edge_weight
model = GCN(data_info, embed_size=-1, use_edge_weight=True)
model(g, node_feat, edge_feat)
@pytest.mark.parametrize('g', get_cases(['block-bipartite']))
def test_gcn_block(g):
data_info = {
'in_size': 10,
'out_size': 7
}
blocks = [g]
node_feat = torch.randn(g.num_src_nodes(), data_info['in_size'])
edge_feat = torch.abs(torch.randn(g.num_edges()))
# not use_edge_weight
model = GCN(data_info, use_edge_weight=False)
model.forward_block(blocks, node_feat)
# use_edge_weight
model = GCN(data_info, use_edge_weight=True)
model.forward_block(blocks, node_feat, edge_feat)
@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
def test_gat(g):
data_info = {
'num_nodes': g.num_nodes(),
'out_size': 7
}
node_feat = None
# node embedding
model = GAT(data_info, embed_size=10)
model(g, node_feat)
# node feat
data_info['in_size'] = g.ndata['h'].shape[-1]
node_feat = g.ndata['h']
model = GAT(data_info, embed_size=-1)
model(g, node_feat)
@pytest.mark.parametrize('g', get_cases(['block-bipartite']))
def test_gat_block(g):
data_info = {
'in_size': 10,
'out_size': 7
}
blocks = [g]
node_feat = torch.randn(g.num_src_nodes(), data_info['in_size'])
model = GAT(data_info, num_layers=1, heads=[8])
model.forward_block(blocks, node_feat)
@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
def test_gin(g):
data_info = {
'num_nodes': g.num_nodes(),
'out_size': 7
}
node_feat = None
# node embedding
model = GIN(data_info, embed_size=10)
model(g, node_feat)
# node feat
data_info['in_size'] = g.ndata['h'].shape[-1]
node_feat = g.ndata['h']
model = GIN(data_info, embed_size=-1)
model(g, node_feat)
@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
def test_sage(g):
data_info = {
'num_nodes': g.num_nodes(),
'out_size': 7
}
node_feat = None
edge_feat = g.edata['scalar_w']
# node embedding
model = GraphSAGE(data_info, embed_size=10)
model(g, node_feat)
model(g, node_feat, edge_feat)
# node feat
data_info['in_size'] = g.ndata['h'].shape[-1]
node_feat = g.ndata['h']
model = GraphSAGE(data_info, embed_size=-1)
model(g, node_feat)
model(g, node_feat, edge_feat)
@pytest.mark.parametrize('g', get_cases(['block-bipartite']))
def test_sage_block(g):
data_info = {
'in_size': 10,
'out_size': 7
}
blocks = [g]
node_feat = torch.randn(g.num_src_nodes(), data_info['in_size'])
edge_feat = torch.abs(torch.randn(g.num_edges()))
model = GraphSAGE(data_info, embed_size=-1)
model.forward_block(blocks, node_feat)
model.forward_block(blocks, node_feat, edge_feat)
@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
def test_sgc(g):
data_info = {
'num_nodes': g.num_nodes(),
'out_size': 7
}
node_feat = None
# node embedding
model = SGC(data_info, embed_size=10)
model(g, node_feat)
# node feat
data_info['in_size'] = g.ndata['h'].shape[-1]
node_feat = g.ndata['h']
model = SGC(data_info, embed_size=-1)
model(g, node_feat)
def test_bilinear():
data_info = {
'in_size': 10,
'out_size': 1
}
model = BilinearPredictor(data_info)
num_pairs = 10
h_src = torch.randn(num_pairs, data_info['in_size'])
h_dst = torch.randn(num_pairs, data_info['in_size'])
model(h_src, h_dst)
def test_ele():
data_info = {
'in_size': 10,
'out_size': 1
}
model = ElementWiseProductPredictor(data_info)
num_pairs = 10
h_src = torch.randn(num_pairs, data_info['in_size'])
h_dst = torch.randn(num_pairs, data_info['in_size'])
model(h_src, h_dst)
@pytest.mark.parametrize('virtual_node', [True, False])
def test_ogbg_gin(virtual_node):
# Test for ogbg-mol datasets
data_info = {
'name': 'ogbg-molhiv',
'out_size': 1
}
model = OGBGGIN(data_info,
embed_size=10,
num_layers=2,
virtual_node=virtual_node)
num_nodes = 5
num_edges = 15
g1 = dgl.rand_graph(num_nodes, num_edges)
g2 = dgl.rand_graph(num_nodes, num_edges)
g = dgl.batch([g1, g2])
num_nodes = g.num_nodes()
num_edges = g.num_edges()
nfeat = torch.zeros(num_nodes, 9).long()
efeat = torch.zeros(num_edges, 3).long()
model(g, nfeat, efeat)
# Test for non-ogbg-mol datasets
data_info = {
'name': 'a_dataset',
'out_size': 1,
'node_feat_size': 15,
'edge_feat_size': 5
}
model = OGBGGIN(data_info,
embed_size=10,
num_layers=2,
virtual_node=virtual_node)
nfeat = torch.randn(num_nodes, data_info['node_feat_size'])
efeat = torch.randn(num_edges, data_info['edge_feat_size'])
model(g, nfeat, efeat)
def test_pna():
# Test for ogbg-mol datasets
data_info = {
'name': 'ogbg-molhiv',
'delta': 1,
'out_size': 1
}
model = PNA(data_info,
embed_size=10,
num_layers=2)
num_nodes = 5
num_edges = 15
g = dgl.rand_graph(num_nodes, num_edges)
nfeat = torch.zeros(num_nodes, 9).long()
model(g, nfeat)
# Test for non-ogbg-mol datasets
data_info = {
'name': 'a_dataset',
'node_feat_size': 15,
'delta': 1,
'out_size': 1
}
model = PNA(data_info,
embed_size=10,
num_layers=2)
nfeat = torch.randn(num_nodes, data_info['node_feat_size'])
model(g, nfeat)