dmlc--dgl
684f66b7aa
* * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2603 行
109 KiB
Python
2603 行
109 KiB
Python
##
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# Copyright 2019-2021 Contributors
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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from scipy import sparse as spsp
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import networkx as nx
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import numpy as np
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import os
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import dgl
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import dgl.function as fn
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import dgl.partition
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import backend as F
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import unittest
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import math
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import pytest
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from test_utils.graph_cases import get_cases
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from test_utils import parametrize_idtype
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from test_heterograph import create_test_heterograph3, create_test_heterograph4, create_test_heterograph5
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D = 5
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# line graph related
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def test_line_graph1():
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N = 5
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G = dgl.DGLGraph(nx.star_graph(N)).to(F.ctx())
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G.edata['h'] = F.randn((2 * N, D))
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L = G.line_graph(shared=True)
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assert L.number_of_nodes() == 2 * N
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assert F.allclose(L.ndata['h'], G.edata['h'])
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assert G.device == F.ctx()
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@parametrize_idtype
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def test_line_graph2(idtype):
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g = dgl.heterograph({
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('user', 'follows', 'user'): ([0, 1, 1, 2, 2],[2, 0, 2, 0, 1])
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}, idtype=idtype)
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lg = dgl.line_graph(g)
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assert lg.number_of_nodes() == 5
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assert lg.number_of_edges() == 8
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row, col = lg.edges()
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assert np.array_equal(F.asnumpy(row),
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np.array([0, 0, 1, 2, 2, 3, 4, 4]))
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assert np.array_equal(F.asnumpy(col),
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np.array([3, 4, 0, 3, 4, 0, 1, 2]))
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lg = dgl.line_graph(g, backtracking=False)
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assert lg.number_of_nodes() == 5
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assert lg.number_of_edges() == 4
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row, col = lg.edges()
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assert np.array_equal(F.asnumpy(row),
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np.array([0, 1, 2, 4]))
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assert np.array_equal(F.asnumpy(col),
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np.array([4, 0, 3, 1]))
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g = dgl.heterograph({
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('user', 'follows', 'user'): ([0, 1, 1, 2, 2],[2, 0, 2, 0, 1])
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}, idtype=idtype).formats('csr')
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lg = dgl.line_graph(g)
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assert lg.number_of_nodes() == 5
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assert lg.number_of_edges() == 8
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row, col = lg.edges()
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assert np.array_equal(F.asnumpy(row),
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np.array([0, 0, 1, 2, 2, 3, 4, 4]))
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assert np.array_equal(F.asnumpy(col),
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np.array([3, 4, 0, 3, 4, 0, 1, 2]))
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g = dgl.heterograph({
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('user', 'follows', 'user'): ([0, 1, 1, 2, 2],[2, 0, 2, 0, 1])
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}, idtype=idtype).formats('csc')
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lg = dgl.line_graph(g)
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assert lg.number_of_nodes() == 5
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assert lg.number_of_edges() == 8
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row, col, eid = lg.edges('all')
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row = F.asnumpy(row)
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col = F.asnumpy(col)
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eid = F.asnumpy(eid).astype(int)
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order = np.argsort(eid)
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assert np.array_equal(row[order],
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np.array([0, 0, 1, 2, 2, 3, 4, 4]))
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assert np.array_equal(col[order],
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np.array([3, 4, 0, 3, 4, 0, 1, 2]))
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def test_no_backtracking():
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N = 5
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G = dgl.DGLGraph(nx.star_graph(N))
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L = G.line_graph(backtracking=False)
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assert L.number_of_nodes() == 2 * N
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for i in range(1, N):
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e1 = G.edge_id(0, i)
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e2 = G.edge_id(i, 0)
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assert not L.has_edge_between(e1, e2)
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assert not L.has_edge_between(e2, e1)
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# reverse graph related
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@parametrize_idtype
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def test_reverse(idtype):
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g = dgl.DGLGraph()
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g = g.astype(idtype).to(F.ctx())
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g.add_nodes(5)
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# The graph need not to be completely connected.
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g.add_edges([0, 1, 2], [1, 2, 1])
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g.ndata['h'] = F.tensor([[0.], [1.], [2.], [3.], [4.]])
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g.edata['h'] = F.tensor([[5.], [6.], [7.]])
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rg = g.reverse()
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assert g.is_multigraph == rg.is_multigraph
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assert g.number_of_nodes() == rg.number_of_nodes()
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assert g.number_of_edges() == rg.number_of_edges()
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assert F.allclose(F.astype(rg.has_edges_between(
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[1, 2, 1], [0, 1, 2]), F.float32), F.ones((3,)))
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assert g.edge_id(0, 1) == rg.edge_id(1, 0)
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assert g.edge_id(1, 2) == rg.edge_id(2, 1)
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assert g.edge_id(2, 1) == rg.edge_id(1, 2)
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# test dgl.reverse
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# test homogeneous graph
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g = dgl.graph((F.tensor([0, 1, 2]), F.tensor([1, 2, 0])))
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g.ndata['h'] = F.tensor([[0.], [1.], [2.]])
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g.edata['h'] = F.tensor([[3.], [4.], [5.]])
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g_r = dgl.reverse(g)
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assert g.number_of_nodes() == g_r.number_of_nodes()
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assert g.number_of_edges() == g_r.number_of_edges()
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u_g, v_g, eids_g = g.all_edges(form='all')
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u_rg, v_rg, eids_rg = g_r.all_edges(form='all')
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assert F.array_equal(u_g, v_rg)
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assert F.array_equal(v_g, u_rg)
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assert F.array_equal(eids_g, eids_rg)
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assert F.array_equal(g.ndata['h'], g_r.ndata['h'])
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assert len(g_r.edata) == 0
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# without share ndata
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g_r = dgl.reverse(g, copy_ndata=False)
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assert g.number_of_nodes() == g_r.number_of_nodes()
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assert g.number_of_edges() == g_r.number_of_edges()
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assert len(g_r.ndata) == 0
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assert len(g_r.edata) == 0
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# with share ndata and edata
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g_r = dgl.reverse(g, copy_ndata=True, copy_edata=True)
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assert g.number_of_nodes() == g_r.number_of_nodes()
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assert g.number_of_edges() == g_r.number_of_edges()
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assert F.array_equal(g.ndata['h'], g_r.ndata['h'])
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assert F.array_equal(g.edata['h'], g_r.edata['h'])
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# add new node feature to g_r
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g_r.ndata['hh'] = F.tensor([0, 1, 2])
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assert ('hh' in g.ndata) is False
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assert ('hh' in g_r.ndata) is True
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# add new edge feature to g_r
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g_r.edata['hh'] = F.tensor([0, 1, 2])
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assert ('hh' in g.edata) is False
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assert ('hh' in g_r.edata) is True
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# test heterogeneous graph
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g = dgl.heterograph({
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('user', 'follows', 'user'): ([0, 1, 2, 4, 3 ,1, 3], [1, 2, 3, 2, 0, 0, 1]),
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('user', 'plays', 'game'): ([0, 0, 2, 3, 3, 4, 1], [1, 0, 1, 0, 1, 0, 0]),
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('developer', 'develops', 'game'): ([0, 1, 1, 2], [0, 0, 1, 1])},
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idtype=idtype, device=F.ctx())
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g.nodes['user'].data['h'] = F.tensor([0, 1, 2, 3, 4])
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g.nodes['user'].data['hh'] = F.tensor([1, 1, 1, 1, 1])
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g.nodes['game'].data['h'] = F.tensor([0, 1])
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g.edges['follows'].data['h'] = F.tensor([0, 1, 2, 4, 3 ,1, 3])
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g.edges['follows'].data['hh'] = F.tensor([1, 2, 3, 2, 0, 0, 1])
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g_r = dgl.reverse(g)
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for etype_g, etype_gr in zip(g.canonical_etypes, g_r.canonical_etypes):
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assert etype_g[0] == etype_gr[2]
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assert etype_g[1] == etype_gr[1]
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assert etype_g[2] == etype_gr[0]
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assert g.number_of_edges(etype_g) == g_r.number_of_edges(etype_gr)
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for ntype in g.ntypes:
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assert g.number_of_nodes(ntype) == g_r.number_of_nodes(ntype)
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assert F.array_equal(g.nodes['user'].data['h'], g_r.nodes['user'].data['h'])
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assert F.array_equal(g.nodes['user'].data['hh'], g_r.nodes['user'].data['hh'])
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assert F.array_equal(g.nodes['game'].data['h'], g_r.nodes['game'].data['h'])
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assert len(g_r.edges['follows'].data) == 0
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u_g, v_g, eids_g = g.all_edges(form='all', etype=('user', 'follows', 'user'))
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u_rg, v_rg, eids_rg = g_r.all_edges(form='all', etype=('user', 'follows', 'user'))
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assert F.array_equal(u_g, v_rg)
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assert F.array_equal(v_g, u_rg)
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assert F.array_equal(eids_g, eids_rg)
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u_g, v_g, eids_g = g.all_edges(form='all', etype=('user', 'plays', 'game'))
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u_rg, v_rg, eids_rg = g_r.all_edges(form='all', etype=('game', 'plays', 'user'))
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assert F.array_equal(u_g, v_rg)
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assert F.array_equal(v_g, u_rg)
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assert F.array_equal(eids_g, eids_rg)
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u_g, v_g, eids_g = g.all_edges(form='all', etype=('developer', 'develops', 'game'))
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u_rg, v_rg, eids_rg = g_r.all_edges(form='all', etype=('game', 'develops', 'developer'))
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assert F.array_equal(u_g, v_rg)
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assert F.array_equal(v_g, u_rg)
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assert F.array_equal(eids_g, eids_rg)
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# withour share ndata
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g_r = dgl.reverse(g, copy_ndata=False)
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for etype_g, etype_gr in zip(g.canonical_etypes, g_r.canonical_etypes):
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assert etype_g[0] == etype_gr[2]
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assert etype_g[1] == etype_gr[1]
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assert etype_g[2] == etype_gr[0]
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assert g.number_of_edges(etype_g) == g_r.number_of_edges(etype_gr)
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for ntype in g.ntypes:
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assert g.number_of_nodes(ntype) == g_r.number_of_nodes(ntype)
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assert len(g_r.nodes['user'].data) == 0
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assert len(g_r.nodes['game'].data) == 0
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g_r = dgl.reverse(g, copy_ndata=True, copy_edata=True)
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print(g_r)
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for etype_g, etype_gr in zip(g.canonical_etypes, g_r.canonical_etypes):
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assert etype_g[0] == etype_gr[2]
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assert etype_g[1] == etype_gr[1]
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assert etype_g[2] == etype_gr[0]
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assert g.number_of_edges(etype_g) == g_r.number_of_edges(etype_gr)
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assert F.array_equal(g.edges['follows'].data['h'], g_r.edges['follows'].data['h'])
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assert F.array_equal(g.edges['follows'].data['hh'], g_r.edges['follows'].data['hh'])
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# add new node feature to g_r
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g_r.nodes['user'].data['hhh'] = F.tensor([0, 1, 2, 3, 4])
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assert ('hhh' in g.nodes['user'].data) is False
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assert ('hhh' in g_r.nodes['user'].data) is True
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# add new edge feature to g_r
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g_r.edges['follows'].data['hhh'] = F.tensor([1, 2, 3, 2, 0, 0, 1])
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assert ('hhh' in g.edges['follows'].data) is False
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assert ('hhh' in g_r.edges['follows'].data) is True
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@parametrize_idtype
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def test_reverse_shared_frames(idtype):
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g = dgl.DGLGraph()
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g = g.astype(idtype).to(F.ctx())
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g.add_nodes(3)
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g.add_edges([0, 1, 2], [1, 2, 1])
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g.ndata['h'] = F.tensor([[0.], [1.], [2.]])
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g.edata['h'] = F.tensor([[3.], [4.], [5.]])
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rg = g.reverse(share_ndata=True, share_edata=True)
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assert F.allclose(g.ndata['h'], rg.ndata['h'])
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assert F.allclose(g.edata['h'], rg.edata['h'])
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assert F.allclose(g.edges[[0, 2], [1, 1]].data['h'],
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rg.edges[[1, 1], [0, 2]].data['h'])
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@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
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def test_to_bidirected():
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# homogeneous graph
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elist = [(0, 0), (0, 1), (1, 0),
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(1, 1), (2, 1), (2, 2)]
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num_edges = 7
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g = dgl.graph(tuple(zip(*elist)))
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elist.append((1, 2))
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elist = set(elist)
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big = dgl.to_bidirected(g)
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assert big.number_of_edges() == num_edges
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src, dst = big.edges()
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eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
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assert eset == set(elist)
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# heterogeneous graph
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elist1 = [(0, 0), (0, 1), (1, 0),
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(1, 1), (2, 1), (2, 2)]
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elist2 = [(0, 0), (0, 1)]
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g = dgl.heterograph({
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('user', 'wins', 'user'): tuple(zip(*elist1)),
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('user', 'follows', 'user'): tuple(zip(*elist2))
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})
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g.nodes['user'].data['h'] = F.ones((3, 1))
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elist1.append((1, 2))
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elist1 = set(elist1)
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elist2.append((1, 0))
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elist2 = set(elist2)
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big = dgl.to_bidirected(g)
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assert big.number_of_edges('wins') == 7
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assert big.number_of_edges('follows') == 3
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src, dst = big.edges(etype='wins')
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eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
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assert eset == set(elist1)
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src, dst = big.edges(etype='follows')
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eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
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assert eset == set(elist2)
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big = dgl.to_bidirected(g, copy_ndata=True)
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assert F.array_equal(g.nodes['user'].data['h'], big.nodes['user'].data['h'])
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def test_add_reverse_edges():
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# homogeneous graph
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g = dgl.graph((F.tensor([0, 1, 3, 1]), F.tensor([1, 2, 0, 2])))
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g.ndata['h'] = F.tensor([[0.], [1.], [2.], [1.]])
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g.edata['h'] = F.tensor([[3.], [4.], [5.], [6.]])
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bg = dgl.add_reverse_edges(g, copy_ndata=True, copy_edata=True)
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u, v = g.edges()
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ub, vb = bg.edges()
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assert F.array_equal(F.cat([u, v], dim=0), ub)
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assert F.array_equal(F.cat([v, u], dim=0), vb)
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assert F.array_equal(g.ndata['h'], bg.ndata['h'])
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assert F.array_equal(F.cat([g.edata['h'], g.edata['h']], dim=0), bg.edata['h'])
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bg.ndata['hh'] = F.tensor([[0.], [1.], [2.], [1.]])
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assert ('hh' in g.ndata) is False
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bg.edata['hh'] = F.tensor([[0.], [1.], [2.], [1.], [0.], [1.], [2.], [1.]])
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assert ('hh' in g.edata) is False
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# donot share ndata and edata
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bg = dgl.add_reverse_edges(g, copy_ndata=False, copy_edata=False)
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ub, vb = bg.edges()
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assert F.array_equal(F.cat([u, v], dim=0), ub)
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assert F.array_equal(F.cat([v, u], dim=0), vb)
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assert ('h' in bg.ndata) is False
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assert ('h' in bg.edata) is False
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# zero edge graph
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g = dgl.graph(([], []))
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bg = dgl.add_reverse_edges(g, copy_ndata=True, copy_edata=True, exclude_self=False)
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# heterogeneous graph
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g = dgl.heterograph({
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('user', 'wins', 'user'): (F.tensor([0, 2, 0, 2, 2]), F.tensor([1, 1, 2, 1, 0])),
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('user', 'plays', 'game'): (F.tensor([1, 2, 1]), F.tensor([2, 1, 1])),
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('user', 'follows', 'user'): (F.tensor([1, 2, 1]), F.tensor([0, 0, 0]))
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})
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g.nodes['game'].data['hv'] = F.ones((3, 1))
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g.nodes['user'].data['hv'] = F.ones((3, 1))
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g.edges['wins'].data['h'] = F.tensor([0, 1, 2, 3, 4])
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bg = dgl.add_reverse_edges(g, copy_ndata=True, copy_edata=True, ignore_bipartite=True)
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assert F.array_equal(g.nodes['game'].data['hv'], bg.nodes['game'].data['hv'])
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assert F.array_equal(g.nodes['user'].data['hv'], bg.nodes['user'].data['hv'])
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u, v = g.all_edges(order='eid', etype=('user', 'wins', 'user'))
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ub, vb = bg.all_edges(order='eid', etype=('user', 'wins', 'user'))
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assert F.array_equal(F.cat([u, v], dim=0), ub)
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assert F.array_equal(F.cat([v, u], dim=0), vb)
|
|
assert F.array_equal(F.cat([g.edges['wins'].data['h'], g.edges['wins'].data['h']], dim=0),
|
|
bg.edges['wins'].data['h'])
|
|
u, v = g.all_edges(order='eid', etype=('user', 'follows', 'user'))
|
|
ub, vb = bg.all_edges(order='eid', etype=('user', 'follows', 'user'))
|
|
assert F.array_equal(F.cat([u, v], dim=0), ub)
|
|
assert F.array_equal(F.cat([v, u], dim=0), vb)
|
|
u, v = g.all_edges(order='eid', etype=('user', 'plays', 'game'))
|
|
ub, vb = bg.all_edges(order='eid', etype=('user', 'plays', 'game'))
|
|
assert F.array_equal(u, ub)
|
|
assert F.array_equal(v, vb)
|
|
assert set(bg.edges['plays'].data.keys()) == {dgl.EID}
|
|
assert set(bg.edges['follows'].data.keys()) == {dgl.EID}
|
|
|
|
# donot share ndata and edata
|
|
bg = dgl.add_reverse_edges(g, copy_ndata=False, copy_edata=False, ignore_bipartite=True)
|
|
assert len(bg.edges['wins'].data) == 0
|
|
assert len(bg.edges['plays'].data) == 0
|
|
assert len(bg.edges['follows'].data) == 0
|
|
assert len(bg.nodes['game'].data) == 0
|
|
assert len(bg.nodes['user'].data) == 0
|
|
u, v = g.all_edges(order='eid', etype=('user', 'wins', 'user'))
|
|
ub, vb = bg.all_edges(order='eid', etype=('user', 'wins', 'user'))
|
|
assert F.array_equal(F.cat([u, v], dim=0), ub)
|
|
assert F.array_equal(F.cat([v, u], dim=0), vb)
|
|
u, v = g.all_edges(order='eid', etype=('user', 'follows', 'user'))
|
|
ub, vb = bg.all_edges(order='eid', etype=('user', 'follows', 'user'))
|
|
assert F.array_equal(F.cat([u, v], dim=0), ub)
|
|
assert F.array_equal(F.cat([v, u], dim=0), vb)
|
|
u, v = g.all_edges(order='eid', etype=('user', 'plays', 'game'))
|
|
ub, vb = bg.all_edges(order='eid', etype=('user', 'plays', 'game'))
|
|
assert F.array_equal(u, ub)
|
|
assert F.array_equal(v, vb)
|
|
|
|
# test the case when some nodes have zero degree
|
|
# homogeneous graph
|
|
g = dgl.graph((F.tensor([0, 1, 3, 1]), F.tensor([1, 2, 0, 2])), num_nodes=6)
|
|
g.ndata['h'] = F.tensor([[0.], [1.], [2.], [1.], [1.], [1.]])
|
|
g.edata['h'] = F.tensor([[3.], [4.], [5.], [6.]])
|
|
bg = dgl.add_reverse_edges(g, copy_ndata=True, copy_edata=True)
|
|
assert g.number_of_nodes() == bg.number_of_nodes()
|
|
assert F.array_equal(g.ndata['h'], bg.ndata['h'])
|
|
assert F.array_equal(F.cat([g.edata['h'], g.edata['h']], dim=0), bg.edata['h'])
|
|
|
|
# heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'wins', 'user'): (F.tensor([0, 2, 0, 2, 2]), F.tensor([1, 1, 2, 1, 0])),
|
|
('user', 'plays', 'game'): (F.tensor([1, 2, 1]), F.tensor([2, 1, 1])),
|
|
('user', 'follows', 'user'): (F.tensor([1, 2, 1]), F.tensor([0, 0, 0]))},
|
|
num_nodes_dict={
|
|
'user': 5,
|
|
'game': 3
|
|
})
|
|
g.nodes['game'].data['hv'] = F.ones((3, 1))
|
|
g.nodes['user'].data['hv'] = F.ones((5, 1))
|
|
g.edges['wins'].data['h'] = F.tensor([0, 1, 2, 3, 4])
|
|
bg = dgl.add_reverse_edges(g, copy_ndata=True, copy_edata=True, ignore_bipartite=True)
|
|
assert g.number_of_nodes('user') == bg.number_of_nodes('user')
|
|
assert g.number_of_nodes('game') == bg.number_of_nodes('game')
|
|
assert F.array_equal(g.nodes['game'].data['hv'], bg.nodes['game'].data['hv'])
|
|
assert F.array_equal(g.nodes['user'].data['hv'], bg.nodes['user'].data['hv'])
|
|
assert F.array_equal(F.cat([g.edges['wins'].data['h'], g.edges['wins'].data['h']], dim=0),
|
|
bg.edges['wins'].data['h'])
|
|
|
|
# test exclude_self
|
|
g = dgl.heterograph({
|
|
('A', 'r1', 'A'): (F.tensor([0, 0, 1, 1]), F.tensor([0, 1, 1, 2])),
|
|
('A', 'r2', 'A'): (F.tensor([0, 1]), F.tensor([1, 2]))
|
|
})
|
|
g.edges['r1'].data['h'] = F.tensor([0, 1, 2, 3])
|
|
rg = dgl.add_reverse_edges(g, copy_edata=True, exclude_self=True)
|
|
assert rg.num_edges('r1') == 6
|
|
assert rg.num_edges('r2') == 4
|
|
assert F.array_equal(rg.edges['r1'].data['h'], F.tensor([0, 1, 2, 3, 1, 3]))
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def test_simple_graph():
|
|
elist = [(0, 1), (0, 2), (1, 2), (0, 1)]
|
|
g = dgl.DGLGraph(elist, readonly=True)
|
|
assert g.is_multigraph
|
|
sg = dgl.to_simple_graph(g)
|
|
assert not sg.is_multigraph
|
|
assert sg.number_of_edges() == 3
|
|
src, dst = sg.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == set(elist)
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def _test_bidirected_graph():
|
|
def _test(in_readonly, out_readonly):
|
|
elist = [(0, 0), (0, 1), (1, 0),
|
|
(1, 1), (2, 1), (2, 2)]
|
|
num_edges = 7
|
|
g = dgl.DGLGraph(elist, readonly=in_readonly)
|
|
elist.append((1, 2))
|
|
elist = set(elist)
|
|
big = dgl.to_bidirected_stale(g, out_readonly)
|
|
assert big.number_of_edges() == num_edges
|
|
src, dst = big.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == set(elist)
|
|
|
|
_test(True, True)
|
|
_test(True, False)
|
|
_test(False, True)
|
|
_test(False, False)
|
|
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def test_khop_graph():
|
|
N = 20
|
|
feat = F.randn((N, 5))
|
|
|
|
def _test(g):
|
|
for k in range(4):
|
|
g_k = dgl.khop_graph(g, k)
|
|
# use original graph to do message passing for k times.
|
|
g.ndata['h'] = feat
|
|
for _ in range(k):
|
|
g.update_all(fn.copy_u('h', 'm'), fn.sum('m', 'h'))
|
|
h_0 = g.ndata.pop('h')
|
|
# use k-hop graph to do message passing for one time.
|
|
g_k.ndata['h'] = feat
|
|
g_k.update_all(fn.copy_u('h', 'm'), fn.sum('m', 'h'))
|
|
h_1 = g_k.ndata.pop('h')
|
|
assert F.allclose(h_0, h_1, rtol=1e-3, atol=1e-3)
|
|
|
|
# Test for random undirected graphs
|
|
g = dgl.DGLGraph(nx.erdos_renyi_graph(N, 0.3))
|
|
_test(g)
|
|
# Test for random directed graphs
|
|
g = dgl.DGLGraph(nx.erdos_renyi_graph(N, 0.3, directed=True))
|
|
_test(g)
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def test_khop_adj():
|
|
N = 20
|
|
feat = F.randn((N, 5))
|
|
g = dgl.DGLGraph(nx.erdos_renyi_graph(N, 0.3))
|
|
for k in range(3):
|
|
adj = F.tensor(F.swapaxes(dgl.khop_adj(g, k), 0, 1))
|
|
# use original graph to do message passing for k times.
|
|
g.ndata['h'] = feat
|
|
for _ in range(k):
|
|
g.update_all(fn.copy_u('h', 'm'), fn.sum('m', 'h'))
|
|
h_0 = g.ndata.pop('h')
|
|
# use k-hop adj to do message passing for one time.
|
|
h_1 = F.matmul(adj, feat)
|
|
assert F.allclose(h_0, h_1, rtol=1e-3, atol=1e-3)
|
|
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def test_laplacian_lambda_max():
|
|
N = 20
|
|
eps = 1e-6
|
|
# test DGLGraph
|
|
g = dgl.DGLGraph(nx.erdos_renyi_graph(N, 0.3))
|
|
l_max = dgl.laplacian_lambda_max(g)
|
|
assert (l_max[0] < 2 + eps)
|
|
# test batched DGLGraph
|
|
'''
|
|
N_arr = [20, 30, 10, 12]
|
|
bg = dgl.batch([
|
|
dgl.DGLGraph(nx.erdos_renyi_graph(N, 0.3))
|
|
for N in N_arr
|
|
])
|
|
l_max_arr = dgl.laplacian_lambda_max(bg)
|
|
assert len(l_max_arr) == len(N_arr)
|
|
for l_max in l_max_arr:
|
|
assert l_max < 2 + eps
|
|
'''
|
|
|
|
def create_large_graph(num_nodes, idtype=F.int64):
|
|
row = np.random.choice(num_nodes, num_nodes * 10)
|
|
col = np.random.choice(num_nodes, num_nodes * 10)
|
|
spm = spsp.coo_matrix((np.ones(len(row)), (row, col)))
|
|
spm.sum_duplicates()
|
|
|
|
return dgl.from_scipy(spm, idtype=idtype)
|
|
|
|
def get_nodeflow(g, node_ids, num_layers):
|
|
batch_size = len(node_ids)
|
|
expand_factor = g.number_of_nodes()
|
|
sampler = dgl.contrib.sampling.NeighborSampler(g, batch_size,
|
|
expand_factor=expand_factor, num_hops=num_layers,
|
|
seed_nodes=node_ids)
|
|
return next(iter(sampler))
|
|
|
|
# Disabled since everything will be on heterogeneous graphs
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
def test_partition_with_halo():
|
|
g = create_large_graph(1000)
|
|
node_part = np.random.choice(4, g.number_of_nodes())
|
|
subgs, _, _ = dgl.transforms.partition_graph_with_halo(g, node_part, 2, reshuffle=True)
|
|
for part_id, subg in subgs.items():
|
|
node_ids = np.nonzero(node_part == part_id)[0]
|
|
lnode_ids = np.nonzero(F.asnumpy(subg.ndata['inner_node']))[0]
|
|
orig_nids = F.asnumpy(subg.ndata['orig_id'])[lnode_ids]
|
|
assert np.all(np.sort(orig_nids) == node_ids)
|
|
assert np.all(F.asnumpy(subg.in_degrees(lnode_ids)) == F.asnumpy(g.in_degrees(orig_nids)))
|
|
assert np.all(F.asnumpy(subg.out_degrees(lnode_ids)) == F.asnumpy(g.out_degrees(orig_nids)))
|
|
|
|
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="METIS doesn't support GPU")
|
|
@parametrize_idtype
|
|
def test_metis_partition(idtype):
|
|
# TODO(zhengda) Metis fails to partition a small graph.
|
|
g = create_large_graph(1000, idtype=idtype)
|
|
if idtype == F.int64:
|
|
check_metis_partition(g, 0)
|
|
check_metis_partition(g, 1)
|
|
check_metis_partition(g, 2)
|
|
check_metis_partition_with_constraint(g)
|
|
else:
|
|
assert_fail = False
|
|
try:
|
|
check_metis_partition(g, 1)
|
|
except:
|
|
assert_fail = True
|
|
assert assert_fail
|
|
|
|
def check_metis_partition_with_constraint(g):
|
|
ntypes = np.zeros((g.number_of_nodes(),), dtype=np.int32)
|
|
ntypes[0:int(g.number_of_nodes()/4)] = 1
|
|
ntypes[int(g.number_of_nodes()*3/4):] = 2
|
|
subgs = dgl.transforms.metis_partition(g, 4, extra_cached_hops=1, balance_ntypes=ntypes)
|
|
if subgs is not None:
|
|
for i in subgs:
|
|
subg = subgs[i]
|
|
parent_nids = F.asnumpy(subg.ndata[dgl.NID])
|
|
sub_ntypes = ntypes[parent_nids]
|
|
print('type0:', np.sum(sub_ntypes == 0))
|
|
print('type1:', np.sum(sub_ntypes == 1))
|
|
print('type2:', np.sum(sub_ntypes == 2))
|
|
subgs = dgl.transforms.metis_partition(g, 4, extra_cached_hops=1,
|
|
balance_ntypes=ntypes, balance_edges=True)
|
|
if subgs is not None:
|
|
for i in subgs:
|
|
subg = subgs[i]
|
|
parent_nids = F.asnumpy(subg.ndata[dgl.NID])
|
|
sub_ntypes = ntypes[parent_nids]
|
|
print('type0:', np.sum(sub_ntypes == 0))
|
|
print('type1:', np.sum(sub_ntypes == 1))
|
|
print('type2:', np.sum(sub_ntypes == 2))
|
|
|
|
def check_metis_partition(g, extra_hops):
|
|
subgs = dgl.transforms.metis_partition(g, 4, extra_cached_hops=extra_hops)
|
|
num_inner_nodes = 0
|
|
num_inner_edges = 0
|
|
if subgs is not None:
|
|
for part_id, subg in subgs.items():
|
|
lnode_ids = np.nonzero(F.asnumpy(subg.ndata['inner_node']))[0]
|
|
ledge_ids = np.nonzero(F.asnumpy(subg.edata['inner_edge']))[0]
|
|
num_inner_nodes += len(lnode_ids)
|
|
num_inner_edges += len(ledge_ids)
|
|
assert np.sum(F.asnumpy(subg.ndata['part_id']) == part_id) == len(lnode_ids)
|
|
assert num_inner_nodes == g.number_of_nodes()
|
|
print(g.number_of_edges() - num_inner_edges)
|
|
|
|
if extra_hops == 0:
|
|
return
|
|
|
|
# partitions with node reshuffling
|
|
subgs = dgl.transforms.metis_partition(g, 4, extra_cached_hops=extra_hops, reshuffle=True)
|
|
num_inner_nodes = 0
|
|
num_inner_edges = 0
|
|
edge_cnts = np.zeros((g.number_of_edges(),))
|
|
if subgs is not None:
|
|
for part_id, subg in subgs.items():
|
|
lnode_ids = np.nonzero(F.asnumpy(subg.ndata['inner_node']))[0]
|
|
ledge_ids = np.nonzero(F.asnumpy(subg.edata['inner_edge']))[0]
|
|
num_inner_nodes += len(lnode_ids)
|
|
num_inner_edges += len(ledge_ids)
|
|
assert np.sum(F.asnumpy(subg.ndata['part_id']) == part_id) == len(lnode_ids)
|
|
nids = F.asnumpy(subg.ndata[dgl.NID])
|
|
|
|
# ensure the local node Ids are contiguous.
|
|
parent_ids = F.asnumpy(subg.ndata[dgl.NID])
|
|
parent_ids = parent_ids[:len(lnode_ids)]
|
|
assert np.all(parent_ids == np.arange(parent_ids[0], parent_ids[-1] + 1))
|
|
|
|
# count the local edges.
|
|
parent_ids = F.asnumpy(subg.edata[dgl.EID])[ledge_ids]
|
|
edge_cnts[parent_ids] += 1
|
|
|
|
orig_ids = subg.ndata['orig_id']
|
|
inner_node = F.asnumpy(subg.ndata['inner_node'])
|
|
for nid in range(subg.number_of_nodes()):
|
|
neighs = subg.predecessors(nid)
|
|
old_neighs1 = F.gather_row(orig_ids, neighs)
|
|
old_nid = F.asnumpy(orig_ids[nid])
|
|
old_neighs2 = g.predecessors(old_nid)
|
|
# If this is an inner node, it should have the full neighborhood.
|
|
if inner_node[nid]:
|
|
assert np.all(np.sort(F.asnumpy(old_neighs1)) == np.sort(F.asnumpy(old_neighs2)))
|
|
# Normally, local edges are only counted once.
|
|
assert np.all(edge_cnts == 1)
|
|
|
|
assert num_inner_nodes == g.number_of_nodes()
|
|
print(g.number_of_edges() - num_inner_edges)
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="It doesn't support GPU")
|
|
def test_reorder_nodes():
|
|
g = create_large_graph(1000)
|
|
new_nids = np.random.permutation(g.number_of_nodes())
|
|
# TODO(zhengda) we need to test both CSR and COO.
|
|
new_g = dgl.partition.reorder_nodes(g, new_nids)
|
|
new_in_deg = new_g.in_degrees()
|
|
new_out_deg = new_g.out_degrees()
|
|
in_deg = g.in_degrees()
|
|
out_deg = g.out_degrees()
|
|
new_in_deg1 = F.scatter_row(in_deg, F.tensor(new_nids), in_deg)
|
|
new_out_deg1 = F.scatter_row(out_deg, F.tensor(new_nids), out_deg)
|
|
assert np.all(F.asnumpy(new_in_deg == new_in_deg1))
|
|
assert np.all(F.asnumpy(new_out_deg == new_out_deg1))
|
|
orig_ids = F.asnumpy(new_g.ndata['orig_id'])
|
|
for nid in range(g.number_of_nodes()):
|
|
neighs = F.asnumpy(g.successors(nid))
|
|
new_neighs1 = new_nids[neighs]
|
|
new_nid = new_nids[nid]
|
|
new_neighs2 = new_g.successors(new_nid)
|
|
assert np.all(np.sort(new_neighs1) == np.sort(F.asnumpy(new_neighs2)))
|
|
|
|
for nid in range(new_g.number_of_nodes()):
|
|
neighs = F.asnumpy(new_g.successors(nid))
|
|
old_neighs1 = orig_ids[neighs]
|
|
old_nid = orig_ids[nid]
|
|
old_neighs2 = g.successors(old_nid)
|
|
assert np.all(np.sort(old_neighs1) == np.sort(F.asnumpy(old_neighs2)))
|
|
|
|
neighs = F.asnumpy(new_g.predecessors(nid))
|
|
old_neighs1 = orig_ids[neighs]
|
|
old_nid = orig_ids[nid]
|
|
old_neighs2 = g.predecessors(old_nid)
|
|
assert np.all(np.sort(old_neighs1) == np.sort(F.asnumpy(old_neighs2)))
|
|
|
|
@parametrize_idtype
|
|
def test_compact(idtype):
|
|
g1 = dgl.heterograph({
|
|
('user', 'follow', 'user'): ([1, 3], [3, 5]),
|
|
('user', 'plays', 'game'): ([2, 3, 2], [4, 4, 5]),
|
|
('game', 'wished-by', 'user'): ([6, 5], [7, 7])},
|
|
{'user': 20, 'game': 10}, idtype=idtype, device=F.ctx())
|
|
|
|
g2 = dgl.heterograph({
|
|
('game', 'clicked-by', 'user'): ([3], [1]),
|
|
('user', 'likes', 'user'): ([1, 8], [8, 9])},
|
|
{'user': 20, 'game': 10}, idtype=idtype, device=F.ctx())
|
|
|
|
g3 = dgl.heterograph({('user', '_E', 'user'): ((0, 1), (1, 2))},
|
|
{'user': 10}, idtype=idtype, device=F.ctx())
|
|
g4 = dgl.heterograph({('user', '_E', 'user'): ((1, 3), (3, 5))},
|
|
{'user': 10}, idtype=idtype, device=F.ctx())
|
|
|
|
def _check(g, new_g, induced_nodes):
|
|
assert g.ntypes == new_g.ntypes
|
|
assert g.canonical_etypes == new_g.canonical_etypes
|
|
|
|
for ntype in g.ntypes:
|
|
assert -1 not in induced_nodes[ntype]
|
|
|
|
for etype in g.canonical_etypes:
|
|
g_src, g_dst = g.all_edges(order='eid', etype=etype)
|
|
g_src = F.asnumpy(g_src)
|
|
g_dst = F.asnumpy(g_dst)
|
|
new_g_src, new_g_dst = new_g.all_edges(order='eid', etype=etype)
|
|
new_g_src_mapped = induced_nodes[etype[0]][F.asnumpy(new_g_src)]
|
|
new_g_dst_mapped = induced_nodes[etype[2]][F.asnumpy(new_g_dst)]
|
|
assert (g_src == new_g_src_mapped).all()
|
|
assert (g_dst == new_g_dst_mapped).all()
|
|
|
|
# Test default
|
|
new_g1 = dgl.compact_graphs(g1)
|
|
induced_nodes = {ntype: new_g1.nodes[ntype].data[dgl.NID] for ntype in new_g1.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
assert new_g1.idtype == idtype
|
|
assert set(induced_nodes['user']) == set([1, 3, 5, 2, 7])
|
|
assert set(induced_nodes['game']) == set([4, 5, 6])
|
|
_check(g1, new_g1, induced_nodes)
|
|
|
|
# Test with always_preserve given a dict
|
|
new_g1 = dgl.compact_graphs(
|
|
g1, always_preserve={'game': F.tensor([4, 7], idtype)})
|
|
assert new_g1.idtype == idtype
|
|
induced_nodes = {ntype: new_g1.nodes[ntype].data[dgl.NID] for ntype in new_g1.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
assert set(induced_nodes['user']) == set([1, 3, 5, 2, 7])
|
|
assert set(induced_nodes['game']) == set([4, 5, 6, 7])
|
|
_check(g1, new_g1, induced_nodes)
|
|
|
|
# Test with always_preserve given a tensor
|
|
new_g3 = dgl.compact_graphs(
|
|
g3, always_preserve=F.tensor([1, 7], idtype))
|
|
induced_nodes = {ntype: new_g3.nodes[ntype].data[dgl.NID] for ntype in new_g3.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
|
|
assert new_g3.idtype == idtype
|
|
assert set(induced_nodes['user']) == set([0, 1, 2, 7])
|
|
_check(g3, new_g3, induced_nodes)
|
|
|
|
# Test multiple graphs
|
|
new_g1, new_g2 = dgl.compact_graphs([g1, g2])
|
|
induced_nodes = {ntype: new_g1.nodes[ntype].data[dgl.NID] for ntype in new_g1.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
assert new_g1.idtype == idtype
|
|
assert new_g2.idtype == idtype
|
|
assert set(induced_nodes['user']) == set([1, 3, 5, 2, 7, 8, 9])
|
|
assert set(induced_nodes['game']) == set([3, 4, 5, 6])
|
|
_check(g1, new_g1, induced_nodes)
|
|
_check(g2, new_g2, induced_nodes)
|
|
|
|
# Test multiple graphs with always_preserve given a dict
|
|
new_g1, new_g2 = dgl.compact_graphs(
|
|
[g1, g2], always_preserve={'game': F.tensor([4, 7], dtype=idtype)})
|
|
induced_nodes = {ntype: new_g1.nodes[ntype].data[dgl.NID] for ntype in new_g1.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
assert new_g1.idtype == idtype
|
|
assert new_g2.idtype == idtype
|
|
assert set(induced_nodes['user']) == set([1, 3, 5, 2, 7, 8, 9])
|
|
assert set(induced_nodes['game']) == set([3, 4, 5, 6, 7])
|
|
_check(g1, new_g1, induced_nodes)
|
|
_check(g2, new_g2, induced_nodes)
|
|
|
|
# Test multiple graphs with always_preserve given a tensor
|
|
new_g3, new_g4 = dgl.compact_graphs(
|
|
[g3, g4], always_preserve=F.tensor([1, 7], dtype=idtype))
|
|
induced_nodes = {ntype: new_g3.nodes[ntype].data[dgl.NID] for ntype in new_g3.ntypes}
|
|
induced_nodes = {k: F.asnumpy(v) for k, v in induced_nodes.items()}
|
|
|
|
assert new_g3.idtype == idtype
|
|
assert new_g4.idtype == idtype
|
|
|
|
assert set(induced_nodes['user']) == set([0, 1, 2, 3, 5, 7])
|
|
_check(g3, new_g3, induced_nodes)
|
|
_check(g4, new_g4, induced_nodes)
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU to simple not implemented")
|
|
@parametrize_idtype
|
|
def test_to_simple(idtype):
|
|
# homogeneous graph
|
|
g = dgl.graph((F.tensor([0, 1, 2, 1]), F.tensor([1, 2, 0, 2])))
|
|
g.ndata['h'] = F.tensor([[0.], [1.], [2.]])
|
|
g.edata['h'] = F.tensor([[3.], [4.], [5.], [6.]])
|
|
sg, wb = dgl.to_simple(g, writeback_mapping=True)
|
|
u, v = g.all_edges(form='uv', order='eid')
|
|
u = F.asnumpy(u).tolist()
|
|
v = F.asnumpy(v).tolist()
|
|
uv = list(zip(u, v))
|
|
eid_map = F.asnumpy(wb)
|
|
|
|
su, sv = sg.all_edges(form='uv', order='eid')
|
|
su = F.asnumpy(su).tolist()
|
|
sv = F.asnumpy(sv).tolist()
|
|
suv = list(zip(su, sv))
|
|
sc = F.asnumpy(sg.edata['count'])
|
|
assert set(uv) == set(suv)
|
|
for i, e in enumerate(suv):
|
|
assert sc[i] == sum(e == _e for _e in uv)
|
|
for i, e in enumerate(uv):
|
|
assert eid_map[i] == suv.index(e)
|
|
# shared ndata
|
|
assert F.array_equal(sg.ndata['h'], g.ndata['h'])
|
|
assert 'h' not in sg.edata
|
|
# new ndata to sg
|
|
sg.ndata['hh'] = F.tensor([[0.], [1.], [2.]])
|
|
assert 'hh' not in g.ndata
|
|
|
|
sg = dgl.to_simple(g, writeback_mapping=False, copy_ndata=False)
|
|
assert 'h' not in sg.ndata
|
|
assert 'h' not in sg.edata
|
|
|
|
# test coalesce edge feature
|
|
sg = dgl.to_simple(g, copy_edata=True, aggregator='arbitrary')
|
|
assert F.allclose(sg.edata['h'][1], F.tensor([4.]))
|
|
sg = dgl.to_simple(g, copy_edata=True, aggregator='sum')
|
|
assert F.allclose(sg.edata['h'][1], F.tensor([10.]))
|
|
sg = dgl.to_simple(g, copy_edata=True, aggregator='mean')
|
|
assert F.allclose(sg.edata['h'][1], F.tensor([5.]))
|
|
|
|
# heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'follow', 'user'): ([0, 1, 2, 1, 1, 1],
|
|
[1, 3, 2, 3, 4, 4]),
|
|
('user', 'plays', 'game'): ([3, 2, 1, 1, 3, 2, 2], [5, 3, 4, 4, 5, 3, 3])},
|
|
idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h'] = F.tensor([0, 1, 2, 3, 4])
|
|
g.nodes['user'].data['hh'] = F.tensor([0, 1, 2, 3, 4])
|
|
g.edges['follow'].data['h'] = F.tensor([0, 1, 2, 3, 4, 5])
|
|
sg, wb = dgl.to_simple(g, return_counts='weights', writeback_mapping=True, copy_edata=True)
|
|
g.nodes['game'].data['h'] = F.tensor([0, 1, 2, 3, 4, 5])
|
|
|
|
for etype in g.canonical_etypes:
|
|
u, v = g.all_edges(form='uv', order='eid', etype=etype)
|
|
u = F.asnumpy(u).tolist()
|
|
v = F.asnumpy(v).tolist()
|
|
uv = list(zip(u, v))
|
|
eid_map = F.asnumpy(wb[etype])
|
|
|
|
su, sv = sg.all_edges(form='uv', order='eid', etype=etype)
|
|
su = F.asnumpy(su).tolist()
|
|
sv = F.asnumpy(sv).tolist()
|
|
suv = list(zip(su, sv))
|
|
sw = F.asnumpy(sg.edges[etype].data['weights'])
|
|
|
|
assert set(uv) == set(suv)
|
|
for i, e in enumerate(suv):
|
|
assert sw[i] == sum(e == _e for _e in uv)
|
|
for i, e in enumerate(uv):
|
|
assert eid_map[i] == suv.index(e)
|
|
# shared ndata
|
|
assert F.array_equal(sg.nodes['user'].data['h'], g.nodes['user'].data['h'])
|
|
assert F.array_equal(sg.nodes['user'].data['hh'], g.nodes['user'].data['hh'])
|
|
assert 'h' not in sg.nodes['game'].data
|
|
# new ndata to sg
|
|
sg.nodes['user'].data['hhh'] = F.tensor([0, 1, 2, 3, 4])
|
|
assert 'hhh' not in g.nodes['user'].data
|
|
# share edata
|
|
feat_idx = F.asnumpy(wb[('user', 'follow', 'user')])
|
|
_, indices = np.unique(feat_idx, return_index=True)
|
|
assert np.array_equal(F.asnumpy(sg.edges['follow'].data['h']),
|
|
F.asnumpy(g.edges['follow'].data['h'])[indices])
|
|
|
|
sg = dgl.to_simple(g, writeback_mapping=False, copy_ndata=False)
|
|
for ntype in g.ntypes:
|
|
assert g.number_of_nodes(ntype) == sg.number_of_nodes(ntype)
|
|
assert 'h' not in sg.nodes['user'].data
|
|
assert 'hh' not in sg.nodes['user'].data
|
|
|
|
# verify DGLGraph.edge_ids() after dgl.to_simple()
|
|
# in case ids are not initialized in underlying coo2csr()
|
|
u = F.tensor([0, 1, 2])
|
|
v = F.tensor([1, 2, 3])
|
|
eids = F.tensor([0, 1, 2])
|
|
g = dgl.graph((u, v))
|
|
assert F.array_equal(g.edge_ids(u, v), eids)
|
|
sg = dgl.to_simple(g)
|
|
assert F.array_equal(sg.edge_ids(u, v), eids)
|
|
|
|
@parametrize_idtype
|
|
def test_to_block(idtype):
|
|
def check(g, bg, ntype, etype, dst_nodes, include_dst_in_src=True):
|
|
if dst_nodes is not None:
|
|
assert F.array_equal(bg.dstnodes[ntype].data[dgl.NID], dst_nodes)
|
|
n_dst_nodes = bg.number_of_nodes('DST/' + ntype)
|
|
if include_dst_in_src:
|
|
assert F.array_equal(
|
|
bg.srcnodes[ntype].data[dgl.NID][:n_dst_nodes],
|
|
bg.dstnodes[ntype].data[dgl.NID])
|
|
|
|
g = g[etype]
|
|
bg = bg[etype]
|
|
induced_src = bg.srcdata[dgl.NID]
|
|
induced_dst = bg.dstdata[dgl.NID]
|
|
induced_eid = bg.edata[dgl.EID]
|
|
|
|
bg_src, bg_dst = bg.all_edges(order='eid')
|
|
src_ans, dst_ans = g.all_edges(order='eid')
|
|
|
|
induced_src_bg = F.gather_row(induced_src, bg_src)
|
|
induced_dst_bg = F.gather_row(induced_dst, bg_dst)
|
|
induced_src_ans = F.gather_row(src_ans, induced_eid)
|
|
induced_dst_ans = F.gather_row(dst_ans, induced_eid)
|
|
|
|
assert F.array_equal(induced_src_bg, induced_src_ans)
|
|
assert F.array_equal(induced_dst_bg, induced_dst_ans)
|
|
|
|
def checkall(g, bg, dst_nodes, include_dst_in_src=True):
|
|
for etype in g.etypes:
|
|
ntype = g.to_canonical_etype(etype)[2]
|
|
if dst_nodes is not None and ntype in dst_nodes:
|
|
check(g, bg, ntype, etype, dst_nodes[ntype], include_dst_in_src)
|
|
else:
|
|
check(g, bg, ntype, etype, None, include_dst_in_src)
|
|
|
|
# homogeneous graph
|
|
g = dgl.graph((F.tensor([1, 2], dtype=idtype), F.tensor([2, 3], dtype=idtype)))
|
|
dst_nodes = F.tensor([3, 2], dtype=idtype)
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes)
|
|
check(g, bg, '_N', '_E', dst_nodes)
|
|
|
|
src_nodes = bg.srcnodes['_N'].data[dgl.NID]
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes, src_nodes=src_nodes)
|
|
check(g, bg, '_N', '_E', dst_nodes)
|
|
|
|
# heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('A', 'AA', 'A'): ([0, 2, 1, 3], [1, 3, 2, 4]),
|
|
('A', 'AB', 'B'): ([0, 1, 3, 1], [1, 3, 5, 6]),
|
|
('B', 'BA', 'A'): ([2, 3], [3, 2])}, idtype=idtype, device=F.ctx())
|
|
g.nodes['A'].data['x'] = F.randn((5, 10))
|
|
g.nodes['B'].data['x'] = F.randn((7, 5))
|
|
g.edges['AA'].data['x'] = F.randn((4, 3))
|
|
g.edges['AB'].data['x'] = F.randn((4, 3))
|
|
g.edges['BA'].data['x'] = F.randn((2, 3))
|
|
g_a = g['AA']
|
|
|
|
def check_features(g, bg):
|
|
for ntype in bg.srctypes:
|
|
for key in g.nodes[ntype].data:
|
|
assert F.array_equal(
|
|
bg.srcnodes[ntype].data[key],
|
|
F.gather_row(g.nodes[ntype].data[key], bg.srcnodes[ntype].data[dgl.NID]))
|
|
for ntype in bg.dsttypes:
|
|
for key in g.nodes[ntype].data:
|
|
assert F.array_equal(
|
|
bg.dstnodes[ntype].data[key],
|
|
F.gather_row(g.nodes[ntype].data[key], bg.dstnodes[ntype].data[dgl.NID]))
|
|
for etype in bg.canonical_etypes:
|
|
for key in g.edges[etype].data:
|
|
assert F.array_equal(
|
|
bg.edges[etype].data[key],
|
|
F.gather_row(g.edges[etype].data[key], bg.edges[etype].data[dgl.EID]))
|
|
|
|
bg = dgl.to_block(g_a)
|
|
check(g_a, bg, 'A', 'AA', None)
|
|
check_features(g_a, bg)
|
|
assert bg.number_of_src_nodes() == 5
|
|
assert bg.number_of_dst_nodes() == 4
|
|
|
|
bg = dgl.to_block(g_a, include_dst_in_src=False)
|
|
check(g_a, bg, 'A', 'AA', None, False)
|
|
check_features(g_a, bg)
|
|
assert bg.number_of_src_nodes() == 4
|
|
assert bg.number_of_dst_nodes() == 4
|
|
|
|
dst_nodes = F.tensor([4, 3, 2, 1], dtype=idtype)
|
|
bg = dgl.to_block(g_a, dst_nodes)
|
|
check(g_a, bg, 'A', 'AA', dst_nodes)
|
|
check_features(g_a, bg)
|
|
|
|
g_ab = g['AB']
|
|
|
|
bg = dgl.to_block(g_ab)
|
|
assert bg.idtype == idtype
|
|
assert bg.number_of_nodes('SRC/B') == 4
|
|
assert F.array_equal(bg.srcnodes['B'].data[dgl.NID], bg.dstnodes['B'].data[dgl.NID])
|
|
assert bg.number_of_nodes('DST/A') == 0
|
|
checkall(g_ab, bg, None)
|
|
check_features(g_ab, bg)
|
|
|
|
dst_nodes = {'B': F.tensor([5, 6, 3, 1], dtype=idtype)}
|
|
bg = dgl.to_block(g, dst_nodes)
|
|
assert bg.number_of_nodes('SRC/B') == 4
|
|
assert F.array_equal(bg.srcnodes['B'].data[dgl.NID], bg.dstnodes['B'].data[dgl.NID])
|
|
assert bg.number_of_nodes('DST/A') == 0
|
|
checkall(g, bg, dst_nodes)
|
|
check_features(g, bg)
|
|
|
|
dst_nodes = {'A': F.tensor([4, 3, 2, 1], dtype=idtype), 'B': F.tensor([3, 5, 6, 1], dtype=idtype)}
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes)
|
|
checkall(g, bg, dst_nodes)
|
|
check_features(g, bg)
|
|
|
|
# test specifying lhs_nodes with include_dst_in_src
|
|
src_nodes = {}
|
|
for ntype in dst_nodes.keys():
|
|
# use the previous run to get the list of source nodes
|
|
src_nodes[ntype] = bg.srcnodes[ntype].data[dgl.NID]
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes, src_nodes=src_nodes)
|
|
checkall(g, bg, dst_nodes)
|
|
check_features(g, bg)
|
|
|
|
# test without include_dst_in_src
|
|
dst_nodes = {'A': F.tensor([4, 3, 2, 1], dtype=idtype), 'B': F.tensor([3, 5, 6, 1], dtype=idtype)}
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes, include_dst_in_src=False)
|
|
checkall(g, bg, dst_nodes, False)
|
|
check_features(g, bg)
|
|
|
|
# test specifying lhs_nodes without include_dst_in_src
|
|
src_nodes = {}
|
|
for ntype in dst_nodes.keys():
|
|
# use the previous run to get the list of source nodes
|
|
src_nodes[ntype] = bg.srcnodes[ntype].data[dgl.NID]
|
|
bg = dgl.to_block(g, dst_nodes=dst_nodes, include_dst_in_src=False,
|
|
src_nodes=src_nodes)
|
|
checkall(g, bg, dst_nodes, False)
|
|
check_features(g, bg)
|
|
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not implemented")
|
|
@parametrize_idtype
|
|
def test_remove_edges(idtype):
|
|
def check(g1, etype, g, edges_removed):
|
|
src, dst, eid = g.edges(etype=etype, form='all')
|
|
src1, dst1 = g1.edges(etype=etype, order='eid')
|
|
if etype is not None:
|
|
eid1 = g1.edges[etype].data[dgl.EID]
|
|
else:
|
|
eid1 = g1.edata[dgl.EID]
|
|
src1 = F.asnumpy(src1)
|
|
dst1 = F.asnumpy(dst1)
|
|
eid1 = F.asnumpy(eid1)
|
|
src = F.asnumpy(src)
|
|
dst = F.asnumpy(dst)
|
|
eid = F.asnumpy(eid)
|
|
sde_set = set(zip(src, dst, eid))
|
|
|
|
for s, d, e in zip(src1, dst1, eid1):
|
|
assert (s, d, e) in sde_set
|
|
assert not np.isin(edges_removed, eid1).any()
|
|
assert g1.idtype == g.idtype
|
|
|
|
for fmt in ['coo', 'csr', 'csc']:
|
|
for edges_to_remove in [[2], [2, 2], [3, 2], [1, 3, 1, 2]]:
|
|
g = dgl.graph(([0, 2, 1, 3], [1, 3, 2, 4]), idtype=idtype).formats(fmt)
|
|
g1 = dgl.remove_edges(g, F.tensor(edges_to_remove, idtype))
|
|
check(g1, None, g, edges_to_remove)
|
|
|
|
g = dgl.from_scipy(
|
|
spsp.csr_matrix(([1, 1, 1, 1], ([0, 2, 1, 3], [1, 3, 2, 4])), shape=(5, 5)),
|
|
idtype=idtype).formats(fmt)
|
|
g1 = dgl.remove_edges(g, F.tensor(edges_to_remove, idtype))
|
|
check(g1, None, g, edges_to_remove)
|
|
|
|
g = dgl.heterograph({
|
|
('A', 'AA', 'A'): ([0, 2, 1, 3], [1, 3, 2, 4]),
|
|
('A', 'AB', 'B'): ([0, 1, 3, 1], [1, 3, 5, 6]),
|
|
('B', 'BA', 'A'): ([2, 3], [3, 2])}, idtype=idtype)
|
|
g2 = dgl.remove_edges(g, {'AA': F.tensor([2], idtype), 'AB': F.tensor([3], idtype), 'BA': F.tensor([1], idtype)})
|
|
check(g2, 'AA', g, [2])
|
|
check(g2, 'AB', g, [3])
|
|
check(g2, 'BA', g, [1])
|
|
|
|
g3 = dgl.remove_edges(g, {'AA': F.tensor([], idtype), 'AB': F.tensor([3], idtype), 'BA': F.tensor([1], idtype)})
|
|
check(g3, 'AA', g, [])
|
|
check(g3, 'AB', g, [3])
|
|
check(g3, 'BA', g, [1])
|
|
|
|
g4 = dgl.remove_edges(g, {'AB': F.tensor([3, 1, 2, 0], idtype)})
|
|
check(g4, 'AA', g, [])
|
|
check(g4, 'AB', g, [3, 1, 2, 0])
|
|
check(g4, 'BA', g, [])
|
|
|
|
@parametrize_idtype
|
|
def test_add_edges(idtype):
|
|
# homogeneous graph
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
u = 0
|
|
v = 1
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 3
|
|
u = [0]
|
|
v = [1]
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 4
|
|
u = F.tensor(u, dtype=idtype)
|
|
v = F.tensor(v, dtype=idtype)
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 5
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 0, 0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 1, 1, 1], dtype=idtype))
|
|
g = dgl.add_edges(g, [], [])
|
|
g = dgl.add_edges(g, 0, [])
|
|
g = dgl.add_edges(g, [], 0)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 5
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 0, 0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 1, 1, 1], dtype=idtype))
|
|
|
|
# node id larger than current max node id
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
u = F.tensor([0, 1], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.number_of_nodes() == 4
|
|
assert g.number_of_edges() == 4
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 2, 3], dtype=idtype))
|
|
|
|
# has data
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.copy_to(F.tensor([1, 1, 1], dtype=idtype), ctx=F.ctx())
|
|
g.edata['h'] = F.copy_to(F.tensor([1, 1], dtype=idtype), ctx=F.ctx())
|
|
u = F.tensor([0, 1], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
e_feat = {'h' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx()),
|
|
'hh' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}
|
|
g = dgl.add_edges(g, u, v, e_feat)
|
|
assert g.number_of_nodes() == 4
|
|
assert g.number_of_edges() == 4
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 2, 3], dtype=idtype))
|
|
assert F.array_equal(g.ndata['h'], F.tensor([1, 1, 1, 0], dtype=idtype))
|
|
assert F.array_equal(g.edata['h'], F.tensor([1, 1, 2, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['hh'], F.tensor([0, 0, 2, 2], dtype=idtype))
|
|
|
|
# zero data graph
|
|
g = dgl.graph(([], []), num_nodes=0, idtype=idtype, device=F.ctx())
|
|
u = F.tensor([0, 1], dtype=idtype)
|
|
v = F.tensor([2, 2], dtype=idtype)
|
|
e_feat = {'h' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx()),
|
|
'hh' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}
|
|
g = dgl.add_edges(g, u, v, e_feat)
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 2
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['h'], F.tensor([2, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['hh'], F.tensor([2, 2], dtype=idtype))
|
|
|
|
# bipartite graph
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
u = 0
|
|
v = 1
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes('user') == 2
|
|
assert g.number_of_nodes('game') == 3
|
|
assert g.number_of_edges() == 3
|
|
u = [0]
|
|
v = [1]
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes('user') == 2
|
|
assert g.number_of_nodes('game') == 3
|
|
assert g.number_of_edges() == 4
|
|
u = F.tensor(u, dtype=idtype)
|
|
v = F.tensor(v, dtype=idtype)
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes('user') == 2
|
|
assert g.number_of_nodes('game') == 3
|
|
assert g.number_of_edges() == 5
|
|
u, v = g.edges(form='uv')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 0, 0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 1, 1, 1], dtype=idtype))
|
|
|
|
# node id larger than current max node id
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
u = F.tensor([0, 2], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
g = dgl.add_edges(g, u, v)
|
|
assert g.device == F.ctx()
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 4
|
|
assert g.number_of_edges() == 4
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 2, 3], dtype=idtype))
|
|
|
|
# has data
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h'] = F.copy_to(F.tensor([1, 1], dtype=idtype), ctx=F.ctx())
|
|
g.nodes['game'].data['h'] = F.copy_to(F.tensor([2, 2, 2], dtype=idtype), ctx=F.ctx())
|
|
g.edata['h'] = F.copy_to(F.tensor([1, 1], dtype=idtype), ctx=F.ctx())
|
|
u = F.tensor([0, 2], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
e_feat = {'h' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx()),
|
|
'hh' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}
|
|
g = dgl.add_edges(g, u, v, e_feat)
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 4
|
|
assert g.number_of_edges() == 4
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1, 2, 2, 3], dtype=idtype))
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1, 0], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2, 2, 0], dtype=idtype))
|
|
assert F.array_equal(g.edata['h'], F.tensor([1, 1, 2, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['hh'], F.tensor([0, 0, 2, 2], dtype=idtype))
|
|
|
|
# heterogeneous graph
|
|
g = create_test_heterograph3(idtype)
|
|
u = F.tensor([0, 2], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
g = dgl.add_edges(g, u, v, etype='plays')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 4
|
|
assert g.number_of_nodes('developer') == 2
|
|
assert g.number_of_edges('plays') == 6
|
|
assert g.number_of_edges('develops') == 2
|
|
u, v = g.edges(form='uv', order='eid', etype='plays')
|
|
assert F.array_equal(u, F.tensor([0, 1, 1, 2, 0, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 0, 1, 1, 2, 3], dtype=idtype))
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2, 0, 0], dtype=idtype))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1, 1, 1, 1, 0, 0], dtype=idtype))
|
|
|
|
# add with feature
|
|
e_feat = {'h': F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}
|
|
u = F.tensor([0, 2], dtype=idtype)
|
|
v = F.tensor([2, 3], dtype=idtype)
|
|
g.nodes['game'].data['h'] = F.copy_to(F.tensor([2, 2, 1, 1], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_edges(g, u, v, data=e_feat, etype='develops')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 4
|
|
assert g.number_of_nodes('developer') == 3
|
|
assert g.number_of_edges('plays') == 6
|
|
assert g.number_of_edges('develops') == 4
|
|
u, v = g.edges(form='uv', order='eid', etype='develops')
|
|
assert F.array_equal(u, F.tensor([0, 1, 0, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1, 2, 3], dtype=idtype))
|
|
assert F.array_equal(g.nodes['developer'].data['h'], F.tensor([3, 3, 0], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edges['develops'].data['h'], F.tensor([0, 0, 2, 2], dtype=idtype))
|
|
|
|
@parametrize_idtype
|
|
def test_add_nodes(idtype):
|
|
# homogeneous Graphs
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.copy_to(F.tensor([1,1,1], dtype=idtype), ctx=F.ctx())
|
|
new_g = dgl.add_nodes(g, 1)
|
|
assert g.number_of_nodes() == 3
|
|
assert new_g.number_of_nodes() == 4
|
|
assert F.array_equal(new_g.ndata['h'], F.tensor([1, 1, 1, 0], dtype=idtype))
|
|
|
|
# zero node graph
|
|
g = dgl.graph(([], []), num_nodes=3, idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.copy_to(F.tensor([1,1,1], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_nodes(g, 1, data={'h' : F.copy_to(F.tensor([2], dtype=idtype), ctx=F.ctx())})
|
|
assert g.number_of_nodes() == 4
|
|
assert F.array_equal(g.ndata['h'], F.tensor([1, 1, 1, 2], dtype=idtype))
|
|
|
|
# bipartite graph
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
g = dgl.add_nodes(g, 2, data={'h' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}, ntype='user')
|
|
assert g.number_of_nodes('user') == 4
|
|
assert g.number_of_nodes('game') == 3
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([0, 0, 2, 2], dtype=idtype))
|
|
g = dgl.add_nodes(g, 2, ntype='game')
|
|
assert g.number_of_nodes('user') == 4
|
|
assert g.number_of_nodes('game') == 5
|
|
|
|
# heterogeneous graph
|
|
g = create_test_heterograph3(idtype)
|
|
g = dgl.add_nodes(g, 1, ntype='user')
|
|
g = dgl.add_nodes(g, 2, data={'h' : F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())}, ntype='game')
|
|
assert g.number_of_nodes('user') == 4
|
|
assert g.number_of_nodes('game') == 4
|
|
assert g.number_of_nodes('developer') == 2
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1, 1, 0], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2, 2, 2], dtype=idtype))
|
|
|
|
@parametrize_idtype
|
|
def test_remove_edges(idtype):
|
|
# homogeneous Graphs
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
e = 0
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2], dtype=idtype))
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
e = [0]
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2], dtype=idtype))
|
|
e = F.tensor([0], dtype=idtype)
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 0
|
|
|
|
# has node data
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_edges(g, 1)
|
|
assert g.number_of_edges() == 1
|
|
assert F.array_equal(g.ndata['h'], F.tensor([1, 2, 3], dtype=idtype))
|
|
|
|
# has edge data
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.edata['h'] = F.copy_to(F.tensor([1, 2], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_edges(g, 0)
|
|
assert g.number_of_edges() == 1
|
|
assert F.array_equal(g.edata['h'], F.tensor([2], dtype=idtype))
|
|
|
|
# invalid eid
|
|
assert_fail = False
|
|
try:
|
|
g = dgl.remove_edges(g, 1)
|
|
except:
|
|
assert_fail = True
|
|
assert assert_fail
|
|
|
|
# bipartite graph
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
e = 0
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2], dtype=idtype))
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
e = [0]
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2], dtype=idtype))
|
|
e = F.tensor([0], dtype=idtype)
|
|
g = dgl.remove_edges(g, e)
|
|
assert g.number_of_edges() == 0
|
|
|
|
# has data
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h'] = F.copy_to(F.tensor([1, 1], dtype=idtype), ctx=F.ctx())
|
|
g.nodes['game'].data['h'] = F.copy_to(F.tensor([2, 2, 2], dtype=idtype), ctx=F.ctx())
|
|
g.edata['h'] = F.copy_to(F.tensor([1, 2], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_edges(g, 1)
|
|
assert g.number_of_edges() == 1
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['h'], F.tensor([1], dtype=idtype))
|
|
|
|
# heterogeneous graph
|
|
g = create_test_heterograph3(idtype)
|
|
g.edges['plays'].data['h'] = F.copy_to(F.tensor([1, 2, 3, 4], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_edges(g, 1, etype='plays')
|
|
assert g.number_of_edges('plays') == 3
|
|
u, v = g.edges(form='uv', order='eid', etype='plays')
|
|
assert F.array_equal(u, F.tensor([0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1, 3, 4], dtype=idtype))
|
|
# remove all edges of 'develops'
|
|
g = dgl.remove_edges(g, [0, 1], etype='develops')
|
|
assert g.number_of_edges('develops') == 0
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2, 2], dtype=idtype))
|
|
assert F.array_equal(g.nodes['developer'].data['h'], F.tensor([3, 3], dtype=idtype))
|
|
|
|
# batched graph
|
|
ctx = F.ctx()
|
|
g1 = dgl.graph(([0, 1], [1, 2]), num_nodes=5, idtype=idtype, device=ctx)
|
|
g2 = dgl.graph(([], []), idtype=idtype, device=ctx)
|
|
g3 = dgl.graph(([2, 3, 4], [3, 2, 1]), idtype=idtype, device=ctx)
|
|
bg = dgl.batch([g1, g2, g3])
|
|
bg_r = dgl.remove_edges(bg, 2)
|
|
assert bg.batch_size == bg_r.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes(), bg_r.batch_num_nodes())
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([2, 0, 2], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_edges(bg, [0, 2])
|
|
assert bg.batch_size == bg_r.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes(), bg_r.batch_num_nodes())
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([1, 0, 2], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_edges(bg, F.tensor([0, 2], dtype=idtype))
|
|
assert bg.batch_size == bg_r.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes(), bg_r.batch_num_nodes())
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([1, 0, 2], dtype=F.int64))
|
|
|
|
# batched heterogeneous graph
|
|
g1 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 1], [1, 2]),
|
|
('user', 'plays', 'game'): ([1, 3], [0, 1])
|
|
}, num_nodes_dict={'user': 4, 'game': 3}, idtype=idtype, device=ctx)
|
|
g2 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 2], [3, 4]),
|
|
('user', 'plays', 'game'): ([], [])
|
|
}, num_nodes_dict={'user': 6, 'game': 2}, idtype=idtype, device=ctx)
|
|
g3 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([], []),
|
|
('user', 'plays', 'game'): ([1, 2], [1, 2])
|
|
}, idtype=idtype, device=ctx)
|
|
bg = dgl.batch([g1, g2, g3])
|
|
bg_r = dgl.remove_edges(bg, 1, etype='follows')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
ntypes = bg.ntypes
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([1, 2, 0], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), bg.batch_num_edges('plays'))
|
|
|
|
bg_r = dgl.remove_edges(bg, 2, etype='plays')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([2, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_edges(bg, [0, 1, 3], etype='follows')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([0, 1, 0], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_edges('plays'), bg_r.batch_num_edges('plays'))
|
|
|
|
bg_r = dgl.remove_edges(bg, [1, 2], etype='plays')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_edges(bg, F.tensor([0, 1, 3], dtype=idtype), etype='follows')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([0, 1, 0], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_edges('plays'), bg_r.batch_num_edges('plays'))
|
|
|
|
bg_r = dgl.remove_edges(bg, F.tensor([1, 2], dtype=idtype), etype='plays')
|
|
assert bg.batch_size == bg_r.batch_size
|
|
for nty in ntypes:
|
|
assert F.array_equal(bg.batch_num_nodes(nty), bg_r.batch_num_nodes(nty))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
@parametrize_idtype
|
|
def test_remove_nodes(idtype):
|
|
# homogeneous Graphs
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
n = 0
|
|
g = dgl.remove_nodes(g, n)
|
|
assert g.number_of_nodes() == 2
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1], dtype=idtype))
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
n = [1]
|
|
g = dgl.remove_nodes(g, n)
|
|
assert g.number_of_nodes() == 2
|
|
assert g.number_of_edges() == 0
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
n = F.tensor([2], dtype=idtype)
|
|
g = dgl.remove_nodes(g, n)
|
|
assert g.number_of_nodes() == 2
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1], dtype=idtype))
|
|
|
|
# invalid nid
|
|
assert_fail = False
|
|
try:
|
|
g.remove_nodes(3)
|
|
except:
|
|
assert_fail = True
|
|
assert assert_fail
|
|
|
|
# has node and edge data
|
|
g = dgl.graph(([0, 0, 2], [0, 1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['hv'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g.edata['he'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_nodes(g, F.tensor([0], dtype=idtype))
|
|
assert g.number_of_nodes() == 2
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(g.ndata['hv'], F.tensor([2, 3], dtype=idtype))
|
|
assert F.array_equal(g.edata['he'], F.tensor([3], dtype=idtype))
|
|
|
|
# node id larger than current max node id
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
n = 0
|
|
g = dgl.remove_nodes(g, n, ntype='user')
|
|
assert g.number_of_nodes('user') == 1
|
|
assert g.number_of_nodes('game') == 3
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2], dtype=idtype))
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
n = [1]
|
|
g = dgl.remove_nodes(g, n, ntype='user')
|
|
assert g.number_of_nodes('user') == 1
|
|
assert g.number_of_nodes('game') == 3
|
|
assert g.number_of_edges() == 1
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([1], dtype=idtype))
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
n = F.tensor([0], dtype=idtype)
|
|
g = dgl.remove_nodes(g, n, ntype='game')
|
|
assert g.number_of_nodes('user') == 2
|
|
assert g.number_of_nodes('game') == 2
|
|
assert g.number_of_edges() == 2
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0 ,1], dtype=idtype))
|
|
|
|
# heterogeneous graph
|
|
g = create_test_heterograph3(idtype)
|
|
g.edges['plays'].data['h'] = F.copy_to(F.tensor([1, 2, 3, 4], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_nodes(g, 0, ntype='game')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 1
|
|
assert g.number_of_nodes('developer') == 2
|
|
assert g.number_of_edges('plays') == 2
|
|
assert g.number_of_edges('develops') == 1
|
|
assert F.array_equal(g.nodes['user'].data['h'], F.tensor([1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.nodes['game'].data['h'], F.tensor([2], dtype=idtype))
|
|
assert F.array_equal(g.nodes['developer'].data['h'], F.tensor([3, 3], dtype=idtype))
|
|
u, v = g.edges(form='uv', order='eid', etype='plays')
|
|
assert F.array_equal(u, F.tensor([1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 0], dtype=idtype))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([3, 4], dtype=idtype))
|
|
u, v = g.edges(form='uv', order='eid', etype='develops')
|
|
assert F.array_equal(u, F.tensor([1], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0], dtype=idtype))
|
|
|
|
# batched graph
|
|
ctx = F.ctx()
|
|
g1 = dgl.graph(([0, 1], [1, 2]), num_nodes=5, idtype=idtype, device=ctx)
|
|
g2 = dgl.graph(([], []), idtype=idtype, device=ctx)
|
|
g3 = dgl.graph(([2, 3, 4], [3, 2, 1]), idtype=idtype, device=ctx)
|
|
bg = dgl.batch([g1, g2, g3])
|
|
bg_r = dgl.remove_nodes(bg, 1)
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes(), F.tensor([4, 0, 5], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([0, 0, 3], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, [1, 7])
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes(), F.tensor([4, 0, 4], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([0, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, F.tensor([1, 7], dtype=idtype))
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes(), F.tensor([4, 0, 4], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges(), F.tensor([0, 0, 1], dtype=F.int64))
|
|
|
|
# batched heterogeneous graph
|
|
g1 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 1], [1, 2]),
|
|
('user', 'plays', 'game'): ([1, 3], [0, 1])
|
|
}, num_nodes_dict={'user': 4, 'game': 3}, idtype=idtype, device=ctx)
|
|
g2 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 2], [3, 4]),
|
|
('user', 'plays', 'game'): ([], [])
|
|
}, num_nodes_dict={'user': 6, 'game': 2}, idtype=idtype, device=ctx)
|
|
g3 = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([], []),
|
|
('user', 'plays', 'game'): ([1, 2], [1, 2])
|
|
}, idtype=idtype, device=ctx)
|
|
bg = dgl.batch([g1, g2, g3])
|
|
bg_r = dgl.remove_nodes(bg, 1, ntype='user')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes('user'), F.tensor([3, 6, 3], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_nodes('game'), bg_r.batch_num_nodes('game'))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([0, 2, 0], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 2], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, 6, ntype='game')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes('user'), bg_r.batch_num_nodes('user'))
|
|
assert F.array_equal(bg_r.batch_num_nodes('game'), F.tensor([3, 2, 2], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([2, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, [1, 5, 6, 11], ntype='user')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes('user'), F.tensor([3, 4, 2], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_nodes('game'), bg_r.batch_num_nodes('game'))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([0, 1, 0], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, [0, 3, 4, 7], ntype='game')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes('user'), bg_r.batch_num_nodes('user'))
|
|
assert F.array_equal(bg_r.batch_num_nodes('game'), F.tensor([2, 0, 2], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, F.tensor([1, 5, 6, 11], dtype=idtype), ntype='user')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg_r.batch_num_nodes('user'), F.tensor([3, 4, 2], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_nodes('game'), bg_r.batch_num_nodes('game'))
|
|
assert F.array_equal(bg_r.batch_num_edges('follows'), F.tensor([0, 1, 0], dtype=F.int64))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
bg_r = dgl.remove_nodes(bg, F.tensor([0, 3, 4, 7], dtype=idtype), ntype='game')
|
|
assert bg_r.batch_size == bg.batch_size
|
|
assert F.array_equal(bg.batch_num_nodes('user'), bg_r.batch_num_nodes('user'))
|
|
assert F.array_equal(bg_r.batch_num_nodes('game'), F.tensor([2, 0, 2], dtype=F.int64))
|
|
assert F.array_equal(bg.batch_num_edges('follows'), bg_r.batch_num_edges('follows'))
|
|
assert F.array_equal(bg_r.batch_num_edges('plays'), F.tensor([1, 0, 1], dtype=F.int64))
|
|
|
|
@parametrize_idtype
|
|
def test_add_selfloop(idtype):
|
|
# homogeneous graph
|
|
|
|
# test for fill_data is float
|
|
g = dgl.graph(([0, 0, 2], [2, 1, 0]), idtype=idtype, device=F.ctx())
|
|
g.edata['he'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g.edata['he1'] = F.copy_to(F.tensor([[0., 1.], [2., 3.], [4., 5.]]), ctx=F.ctx())
|
|
g.ndata['hn'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g)
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 6
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 0, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2, 1, 0, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['he'], F.tensor([1, 2, 3, 1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edata['he1'], F.tensor([[0., 1.], [2., 3.], [4., 5.],
|
|
[1., 1.], [1., 1.], [1., 1.]]))
|
|
|
|
# test for fill_data is int
|
|
g = dgl.graph(([0, 0, 2], [2, 1, 0]), idtype=idtype, device=F.ctx())
|
|
g.edata['he'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g.edata['he1'] = F.copy_to(F.tensor([[0, 1], [2, 3], [4, 5]], dtype=idtype), ctx=F.ctx())
|
|
g.ndata['hn'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g, fill_data=1)
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 6
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 0, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2, 1, 0, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['he'], F.tensor([1, 2, 3, 1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edata['he1'], F.tensor([[0, 1], [2, 3], [4, 5],
|
|
[1, 1], [1, 1], [1, 1]], dtype=idtype))
|
|
|
|
# test for fill_data is str
|
|
g = dgl.graph(([0, 0, 2], [2, 1, 0]), idtype=idtype, device=F.ctx())
|
|
g.edata['he'] = F.copy_to(F.tensor([1., 2., 3.]), ctx=F.ctx())
|
|
g.edata['he1'] = F.copy_to(F.tensor([[0., 1.], [2., 3.], [4., 5.]]), ctx=F.ctx())
|
|
g.ndata['hn'] = F.copy_to(F.tensor([1, 2, 3], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g, fill_data='sum')
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 6
|
|
u, v = g.edges(form='uv', order='eid')
|
|
assert F.array_equal(u, F.tensor([0, 0, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([2, 1, 0, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edata['he'], F.tensor([1., 2., 3., 3., 2., 1.]))
|
|
assert F.array_equal(g.edata['he1'], F.tensor([[0., 1.], [2., 3.], [4., 5.],
|
|
[4., 5.], [2., 3.], [0., 1.]]))
|
|
|
|
# bipartite graph
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1, 2], [1, 2, 2])}, idtype=idtype, device=F.ctx())
|
|
# nothing will happend
|
|
raise_error = False
|
|
try:
|
|
g = dgl.add_self_loop(g)
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# test for fill_data is float
|
|
g = create_test_heterograph5(idtype)
|
|
g.edges['follows'].data['h1'] = F.copy_to(F.tensor([[0., 1.], [1., 2.]]), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g, etype='follows')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 2
|
|
assert g.number_of_edges('follows') == 5
|
|
assert g.number_of_edges('plays') == 2
|
|
u, v = g.edges(form='uv', order='eid', etype='follows')
|
|
assert F.array_equal(u, F.tensor([1, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h'], F.tensor([1, 2, 1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h1'], F.tensor([[0., 1.], [1., 2.], [1., 1.],
|
|
[1., 1.], [1., 1.]]))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1, 2], dtype=idtype))
|
|
|
|
# test for fill_data is int
|
|
g = create_test_heterograph5(idtype)
|
|
g.edges['follows'].data['h1'] = F.copy_to(F.tensor([[0, 1], [1, 2]], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g, fill_data=1, etype='follows')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 2
|
|
assert g.number_of_edges('follows') == 5
|
|
assert g.number_of_edges('plays') == 2
|
|
u, v = g.edges(form='uv', order='eid', etype='follows')
|
|
assert F.array_equal(u, F.tensor([1, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h'], F.tensor([1, 2, 1, 1, 1], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h1'], F.tensor([[0, 1], [1, 2], [1, 1],
|
|
[1, 1], [1, 1]], dtype=idtype))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1, 2], dtype=idtype))
|
|
|
|
# test for fill_data is str
|
|
g = dgl.heterograph({
|
|
('user', 'follows', 'user'): (F.tensor([1, 2], dtype=idtype),
|
|
F.tensor([0, 1], dtype=idtype)),
|
|
('user', 'plays', 'game'): (F.tensor([0, 1], dtype=idtype),
|
|
F.tensor([0, 1], dtype=idtype))},
|
|
idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h'] = F.copy_to(F.tensor([1, 1, 1], dtype=idtype), ctx=F.ctx())
|
|
g.nodes['game'].data['h'] = F.copy_to(F.tensor([2, 2], dtype=idtype), ctx=F.ctx())
|
|
g.edges['follows'].data['h'] = F.copy_to(F.tensor([1., 2.]), ctx=F.ctx())
|
|
g.edges['follows'].data['h1'] = F.copy_to(F.tensor([[0., 1.], [1., 2.]]), ctx=F.ctx())
|
|
g.edges['plays'].data['h'] = F.copy_to(F.tensor([1., 2.]), ctx=F.ctx())
|
|
g = dgl.add_self_loop(g, fill_data='mean', etype='follows')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 2
|
|
assert g.number_of_edges('follows') == 5
|
|
assert g.number_of_edges('plays') == 2
|
|
u, v = g.edges(form='uv', order='eid', etype='follows')
|
|
assert F.array_equal(u, F.tensor([1, 2, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1, 0, 1, 2], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h'], F.tensor([1., 2., 1., 2., 0.]))
|
|
assert F.array_equal(g.edges['follows'].data['h1'], F.tensor([[0., 1.], [1., 2.], [0., 1.],
|
|
[1., 2.], [0., 0.]]))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1., 2.]))
|
|
|
|
raise_error = False
|
|
try:
|
|
g = dgl.add_self_loop(g, etype='plays')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
@parametrize_idtype
|
|
def test_remove_selfloop(idtype):
|
|
# homogeneous graph
|
|
g = dgl.graph(([0, 0, 0, 1], [1, 0, 0, 2]), idtype=idtype, device=F.ctx())
|
|
g.edata['he'] = F.copy_to(F.tensor([1, 2, 3, 4], dtype=idtype), ctx=F.ctx())
|
|
g = dgl.remove_self_loop(g)
|
|
assert g.number_of_nodes() == 3
|
|
assert g.number_of_edges() == 2
|
|
assert F.array_equal(g.edata['he'], F.tensor([1, 4], dtype=idtype))
|
|
|
|
# bipartite graph
|
|
g = dgl.heterograph(
|
|
{('user', 'plays', 'game'): ([0, 1, 2], [1, 2, 2])}, idtype=idtype, device=F.ctx())
|
|
# nothing will happend
|
|
raise_error = False
|
|
try:
|
|
g = dgl.remove_self_loop(g, etype='plays')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
g = create_test_heterograph4(idtype)
|
|
g = dgl.remove_self_loop(g, etype='follows')
|
|
assert g.number_of_nodes('user') == 3
|
|
assert g.number_of_nodes('game') == 2
|
|
assert g.number_of_edges('follows') == 2
|
|
assert g.number_of_edges('plays') == 2
|
|
u, v = g.edges(form='uv', order='eid', etype='follows')
|
|
assert F.array_equal(u, F.tensor([1, 2], dtype=idtype))
|
|
assert F.array_equal(v, F.tensor([0, 1], dtype=idtype))
|
|
assert F.array_equal(g.edges['follows'].data['h'], F.tensor([2, 4], dtype=idtype))
|
|
assert F.array_equal(g.edges['plays'].data['h'], F.tensor([1, 2], dtype=idtype))
|
|
|
|
raise_error = False
|
|
try:
|
|
g = dgl.remove_self_loop(g, etype='plays')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# batch information
|
|
g = dgl.graph(([0, 0, 0, 1, 3, 3, 4], [1, 0, 0, 2, 3, 4, 4]), idtype=idtype, device=F.ctx())
|
|
g.set_batch_num_nodes(F.tensor([3, 2], dtype=F.int64))
|
|
g.set_batch_num_edges(F.tensor([4, 3], dtype=F.int64))
|
|
g = dgl.remove_self_loop(g)
|
|
assert g.number_of_nodes() == 5
|
|
assert g.number_of_edges() == 3
|
|
assert F.array_equal(g.batch_num_nodes(), F.tensor([3, 2], dtype=F.int64))
|
|
assert F.array_equal(g.batch_num_edges(), F.tensor([2, 1], dtype=F.int64))
|
|
|
|
|
|
@parametrize_idtype
|
|
def test_reorder_graph(idtype):
|
|
g = dgl.graph(([0, 1, 2, 3, 4], [2, 2, 3, 2, 3]),
|
|
idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.copy_to(F.randn((g.num_nodes(), 3)), ctx=F.ctx())
|
|
g.edata['w'] = F.copy_to(F.randn((g.num_edges(), 2)), ctx=F.ctx())
|
|
|
|
# call with default: node_permute_algo=None, edge_permute_algo='src'
|
|
rg = dgl.reorder_graph(g)
|
|
assert dgl.EID in rg.edata.keys()
|
|
src = F.asnumpy(rg.edges()[0])
|
|
assert np.array_equal(src, np.sort(src))
|
|
|
|
# call with 'rcmk' node_permute_algo
|
|
rg = dgl.reorder_graph(g, node_permute_algo='rcmk')
|
|
assert dgl.NID in rg.ndata.keys()
|
|
assert dgl.EID in rg.edata.keys()
|
|
src = F.asnumpy(rg.edges()[0])
|
|
assert np.array_equal(src, np.sort(src))
|
|
|
|
# call with 'dst' edge_permute_algo
|
|
rg = dgl.reorder_graph(g, edge_permute_algo='dst')
|
|
dst = F.asnumpy(rg.edges()[1])
|
|
assert np.array_equal(dst, np.sort(dst))
|
|
|
|
# call with unknown edge_permute_algo
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(g, edge_permute_algo='none')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# reorder back to original according to stored ids
|
|
rg = dgl.reorder_graph(g, node_permute_algo='rcmk')
|
|
rg2 = dgl.reorder_graph(rg, 'custom', permute_config={
|
|
'nodes_perm': np.argsort(F.asnumpy(rg.ndata[dgl.NID]))})
|
|
assert F.array_equal(g.ndata['h'], rg2.ndata['h'])
|
|
assert F.array_equal(g.edata['w'], rg2.edata['w'])
|
|
|
|
# do not store ids
|
|
rg = dgl.reorder_graph(g, store_ids=False)
|
|
assert not dgl.NID in rg.ndata.keys()
|
|
assert not dgl.EID in rg.edata.keys()
|
|
|
|
# metis does not work on windows.
|
|
if os.name == 'nt':
|
|
pass
|
|
else:
|
|
# metis_partition may fail for small graph.
|
|
mg = create_large_graph(1000).to(F.ctx())
|
|
|
|
# call with metis strategy, but k is not specified
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(mg, node_permute_algo='metis')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# call with metis strategy, k is specified
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(mg,
|
|
node_permute_algo='metis', permute_config={'k': 2})
|
|
except:
|
|
raise_error = True
|
|
assert not raise_error
|
|
|
|
# call with qualified nodes_perm specified
|
|
nodes_perm = np.random.permutation(g.num_nodes())
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(g, node_permute_algo='custom', permute_config={
|
|
'nodes_perm': nodes_perm})
|
|
except:
|
|
raise_error = True
|
|
assert not raise_error
|
|
|
|
# call with unqualified nodes_perm specified
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(g, node_permute_algo='custom', permute_config={
|
|
'nodes_perm': nodes_perm[:g.num_nodes() - 1]})
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# call with unsupported strategy
|
|
raise_error = False
|
|
try:
|
|
dgl.reorder_graph(g, node_permute_algo='cmk')
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# heterograph: not supported
|
|
raise_error = False
|
|
try:
|
|
hg = dgl.heterogrpah({('user', 'follow', 'user'): (
|
|
[0, 1], [1, 2])}, idtype=idtype, device=F.ctx())
|
|
dgl.reorder_graph(hg)
|
|
except:
|
|
raise_error = True
|
|
assert raise_error
|
|
|
|
# TODO: shall we fix them?
|
|
# add 'csc' format if needed
|
|
#fg = g.formats('csr')
|
|
#assert 'csc' not in sum(fg.formats().values(), [])
|
|
#rfg = dgl.reorder_graph(fg)
|
|
#assert 'csc' in sum(rfg.formats().values(), [])
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name == "tensorflow", reason="TF doesn't support a slicing operation")
|
|
@parametrize_idtype
|
|
def test_norm_by_dst(idtype):
|
|
# Case1: A homogeneous graph
|
|
g = dgl.graph(([0, 1, 1], [1, 1, 2]), idtype=idtype, device=F.ctx())
|
|
eweight = dgl.norm_by_dst(g)
|
|
assert F.allclose(eweight, F.tensor([0.5, 0.5, 1.0]))
|
|
|
|
# Case2: A heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 1], [1, 2]),
|
|
('user', 'plays', 'game'): ([0, 1, 1], [1, 1, 2])
|
|
}, idtype=idtype, device=F.ctx())
|
|
eweight = dgl.norm_by_dst(g, etype=('user', 'plays', 'game'))
|
|
assert F.allclose(eweight, F.tensor([0.5, 0.5, 1.0]))
|
|
|
|
@parametrize_idtype
|
|
def test_module_add_self_loop(idtype):
|
|
g = dgl.graph(([1, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 2))
|
|
g.edata['w'] = F.randn((g.num_edges(), 3))
|
|
|
|
# Case1: add self-loops with the default setting
|
|
transform = dgl.AddSelfLoop()
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
assert new_g.num_edges() == 4
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (1, 1), (1, 2), (2, 2)}
|
|
assert 'h' in new_g.ndata
|
|
assert 'w' in new_g.edata
|
|
|
|
# Case2: Remove self-loops first to avoid duplicate ones
|
|
transform = dgl.AddSelfLoop(allow_duplicate=True)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
assert new_g.num_edges() == 5
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (1, 1), (1, 2), (2, 2)}
|
|
assert 'h' in new_g.ndata
|
|
assert 'w' in new_g.edata
|
|
|
|
# Create a heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'plays', 'game'): ([0], [1]),
|
|
('user', 'follows', 'user'): ([1], [3])
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h1'] = F.randn((4, 2))
|
|
g.edges['plays'].data['w1'] = F.randn((1, 3))
|
|
g.nodes['game'].data['h2'] = F.randn((2, 4))
|
|
g.edges['follows'].data['w2'] = F.randn((1, 5))
|
|
|
|
# Case3: add self-loops for a heterogeneous graph
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.ntypes == g.ntypes
|
|
assert new_g.canonical_etypes == g.canonical_etypes
|
|
for nty in new_g.ntypes:
|
|
assert new_g.num_nodes(nty) == g.num_nodes(nty)
|
|
assert new_g.num_edges('plays') == 1
|
|
assert new_g.num_edges('follows') == 5
|
|
assert 'h1' in new_g.nodes['user'].data
|
|
assert 'h2' in new_g.nodes['game'].data
|
|
assert 'w1' in new_g.edges['plays'].data
|
|
assert 'w2' in new_g.edges['follows'].data
|
|
|
|
# Case4: add self-etypes for a heterogeneous graph
|
|
transform = dgl.AddSelfLoop(new_etypes=True)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.ntypes == g.ntypes
|
|
assert set(new_g.canonical_etypes) == {
|
|
('user', 'plays', 'game'), ('user', 'follows', 'user'),
|
|
('user', 'self', 'user'), ('game', 'self', 'game')
|
|
}
|
|
for nty in new_g.ntypes:
|
|
assert new_g.num_nodes(nty) == g.num_nodes(nty)
|
|
assert new_g.num_edges('plays') == 1
|
|
assert new_g.num_edges('follows') == 5
|
|
assert new_g.num_edges(('user', 'self', 'user')) == 4
|
|
assert new_g.num_edges(('game', 'self', 'game')) == 2
|
|
assert 'h1' in new_g.nodes['user'].data
|
|
assert 'h2' in new_g.nodes['game'].data
|
|
assert 'w1' in new_g.edges['plays'].data
|
|
assert 'w2' in new_g.edges['follows'].data
|
|
|
|
@parametrize_idtype
|
|
def test_module_remove_self_loop(idtype):
|
|
transform = dgl.RemoveSelfLoop()
|
|
|
|
# Case1: homogeneous graph
|
|
g = dgl.graph(([1, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 2))
|
|
g.edata['w'] = F.randn((g.num_edges(), 3))
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
assert new_g.num_edges() == 1
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(1, 2)}
|
|
assert 'h' in new_g.ndata
|
|
assert 'w' in new_g.edata
|
|
|
|
# Case2: heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'plays', 'game'): ([0, 1], [1, 1]),
|
|
('user', 'follows', 'user'): ([1, 2], [2, 2])
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.nodes['user'].data['h1'] = F.randn((3, 2))
|
|
g.edges['plays'].data['w1'] = F.randn((2, 3))
|
|
g.nodes['game'].data['h2'] = F.randn((2, 4))
|
|
g.edges['follows'].data['w2'] = F.randn((2, 5))
|
|
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.ntypes == g.ntypes
|
|
assert new_g.canonical_etypes == g.canonical_etypes
|
|
for nty in new_g.ntypes:
|
|
assert new_g.num_nodes(nty) == g.num_nodes(nty)
|
|
assert new_g.num_edges('plays') == 2
|
|
assert new_g.num_edges('follows') == 1
|
|
assert 'h1' in new_g.nodes['user'].data
|
|
assert 'h2' in new_g.nodes['game'].data
|
|
assert 'w1' in new_g.edges['plays'].data
|
|
assert 'w2' in new_g.edges['follows'].data
|
|
|
|
@parametrize_idtype
|
|
def test_module_add_reverse(idtype):
|
|
transform = dgl.AddReverse()
|
|
|
|
# Case1: Add reverse edges for a homogeneous graph
|
|
g = dgl.graph(([0], [1]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 3))
|
|
g.edata['w'] = F.randn((g.num_edges(), 2))
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert g.num_nodes() == new_g.num_nodes()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 0)}
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
assert F.allclose(g.edata['w'], F.narrow_row(new_g.edata['w'], 0, 1))
|
|
assert F.allclose(F.narrow_row(new_g.edata['w'], 1, 2), F.zeros((1, 2), F.float32, F.ctx()))
|
|
|
|
# Case2: Add reverse edges for a homogeneous graph and copy edata
|
|
transform = dgl.AddReverse(copy_edata=True)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert g.num_nodes() == new_g.num_nodes()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 0)}
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
assert F.allclose(g.edata['w'], F.narrow_row(new_g.edata['w'], 0, 1))
|
|
assert F.allclose(g.edata['w'], F.narrow_row(new_g.edata['w'], 1, 2))
|
|
|
|
# Case3: Add reverse edges for a heterogeneous graph
|
|
g = dgl.heterograph({
|
|
('user', 'plays', 'game'): ([0, 1], [1, 1]),
|
|
('user', 'follows', 'user'): ([1, 2], [2, 2])
|
|
}, device=F.ctx())
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert g.ntypes == new_g.ntypes
|
|
assert set(new_g.canonical_etypes) == {
|
|
('user', 'plays', 'game'), ('user', 'follows', 'user'), ('game', 'rev_plays', 'user')}
|
|
for nty in g.ntypes:
|
|
assert g.num_nodes(nty) == new_g.num_nodes(nty)
|
|
|
|
src, dst = new_g.edges(etype='plays')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 1)}
|
|
|
|
src, dst = new_g.edges(etype='follows')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(1, 2), (2, 2), (2, 1)}
|
|
|
|
src, dst = new_g.edges(etype='rev_plays')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(1, 1), (1, 0)}
|
|
|
|
# Case4: Enforce reverse edge types for symmetric canonical edge types
|
|
transform = dgl.AddReverse(sym_new_etype=True)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert g.ntypes == new_g.ntypes
|
|
assert set(new_g.canonical_etypes) == {
|
|
('user', 'plays', 'game'), ('user', 'follows', 'user'),
|
|
('game', 'rev_plays', 'user'), ('user', 'rev_follows', 'user')}
|
|
for nty in g.ntypes:
|
|
assert g.num_nodes(nty) == new_g.num_nodes(nty)
|
|
|
|
src, dst = new_g.edges(etype='plays')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 1)}
|
|
|
|
src, dst = new_g.edges(etype='follows')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(1, 2), (2, 2)}
|
|
|
|
src, dst = new_g.edges(etype='rev_plays')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(1, 1), (1, 0)}
|
|
|
|
src, dst = new_g.edges(etype='rev_follows')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(2, 1), (2, 2)}
|
|
|
|
@unittest.skipIf(F._default_context_str == 'gpu', reason="GPU not supported for to_simple")
|
|
@parametrize_idtype
|
|
def test_module_to_simple(idtype):
|
|
transform = dgl.ToSimple()
|
|
g = dgl.graph(([0, 1, 1], [1, 2, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 2))
|
|
g.edata['w'] = F.tensor([[0.1], [0.2], [0.3]])
|
|
sg = transform(g)
|
|
assert sg.device == g.device
|
|
assert sg.idtype == g.idtype
|
|
assert sg.num_nodes() == g.num_nodes()
|
|
assert sg.num_edges() == 2
|
|
src, dst = sg.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 2)}
|
|
assert F.allclose(sg.edata['count'], F.tensor([1, 2]))
|
|
assert F.allclose(sg.ndata['h'], g.ndata['h'])
|
|
|
|
g = dgl.heterograph({
|
|
('user', 'follows', 'user'): ([0, 1, 1], [1, 2, 2]),
|
|
('user', 'plays', 'game'): ([0, 1, 0], [1, 1, 1])
|
|
})
|
|
sg = transform(g)
|
|
assert sg.device == g.device
|
|
assert sg.idtype == g.idtype
|
|
assert sg.ntypes == g.ntypes
|
|
assert sg.canonical_etypes == g.canonical_etypes
|
|
for nty in sg.ntypes:
|
|
assert sg.num_nodes(nty) == g.num_nodes(nty)
|
|
for ety in sg.canonical_etypes:
|
|
assert sg.num_edges(ety) == 2
|
|
|
|
src, dst = sg.edges(etype='follows')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 2)}
|
|
|
|
src, dst = sg.edges(etype='plays')
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 1)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_line_graph(idtype):
|
|
transform = dgl.LineGraph()
|
|
g = dgl.graph(([0, 1, 1], [1, 0, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.tensor([[0.], [1.], [2.]])
|
|
g.edata['w'] = F.tensor([[0.], [0.1], [0.2]])
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_edges()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (0, 2), (1, 0)}
|
|
|
|
transform = dgl.LineGraph(backtracking=False)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_edges()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 2)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_khop_graph(idtype):
|
|
transform = dgl.KHopGraph(2)
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 2))
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 2)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_add_metapaths(idtype):
|
|
g = dgl.heterograph({
|
|
('person', 'author', 'paper'): ([0, 0, 1], [1, 2, 2]),
|
|
('paper', 'accepted', 'venue'): ([1], [0]),
|
|
('paper', 'rejected', 'venue'): ([2], [1])
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.nodes['venue'].data['h'] = F.randn((g.num_nodes('venue'), 2))
|
|
g.edges['author'].data['h'] = F.randn((g.num_edges('author'), 3))
|
|
|
|
# Case1: keep_orig_edges is True
|
|
metapaths = {
|
|
'accepted': [('person', 'author', 'paper'), ('paper', 'accepted', 'venue')],
|
|
'rejected': [('person', 'author', 'paper'), ('paper', 'rejected', 'venue')]
|
|
}
|
|
transform = dgl.AddMetaPaths(metapaths)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.ntypes == g.ntypes
|
|
assert set(new_g.canonical_etypes) == {
|
|
('person', 'author', 'paper'), ('paper', 'accepted', 'venue'),
|
|
('paper', 'rejected', 'venue'), ('person', 'accepted', 'venue'),
|
|
('person', 'rejected', 'venue')
|
|
}
|
|
for nty in new_g.ntypes:
|
|
assert new_g.num_nodes(nty) == g.num_nodes(nty)
|
|
for ety in g.canonical_etypes:
|
|
assert new_g.num_edges(ety) == g.num_edges(ety)
|
|
assert F.allclose(g.nodes['venue'].data['h'], new_g.nodes['venue'].data['h'])
|
|
assert F.allclose(g.edges['author'].data['h'], new_g.edges['author'].data['h'])
|
|
|
|
src, dst = new_g.edges(etype=('person', 'accepted', 'venue'))
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0)}
|
|
|
|
src, dst = new_g.edges(etype=('person', 'rejected', 'venue'))
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 1)}
|
|
|
|
# Case2: keep_orig_edges is False
|
|
transform = dgl.AddMetaPaths(metapaths, keep_orig_edges=False)
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.ntypes == g.ntypes
|
|
assert len(new_g.canonical_etypes) == 2
|
|
for nty in new_g.ntypes:
|
|
assert new_g.num_nodes(nty) == g.num_nodes(nty)
|
|
assert F.allclose(g.nodes['venue'].data['h'], new_g.nodes['venue'].data['h'])
|
|
|
|
src, dst = new_g.edges(etype=('person', 'accepted', 'venue'))
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0)}
|
|
|
|
src, dst = new_g.edges(etype=('person', 'rejected', 'venue'))
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 1)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_compose(idtype):
|
|
g = dgl.graph(([0, 1], [1, 2]), idtype=idtype, device=F.ctx())
|
|
transform = dgl.Compose([dgl.AddReverse(), dgl.AddSelfLoop()])
|
|
new_g = transform(g)
|
|
assert new_g.device == g.device
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.num_edges() == 7
|
|
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 1), (1, 2), (1, 0), (2, 1), (0, 0), (1, 1), (2, 2)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_gcnnorm(idtype):
|
|
g = dgl.heterograph({
|
|
('A', 'r1', 'A'): ([0, 1, 2], [0, 0, 1]),
|
|
('A', 'r2', 'B'): ([0, 0], [1, 1]),
|
|
('B', 'r3', 'B'): ([0, 1, 2], [0, 0, 1])
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.edges['r3'].data['w'] = F.tensor([0.1, 0.2, 0.3])
|
|
transform = dgl.GCNNorm()
|
|
new_g = transform(g)
|
|
assert 'w' not in new_g.edges[('A', 'r2', 'B')].data
|
|
assert F.allclose(new_g.edges[('A', 'r1', 'A')].data['w'],
|
|
F.tensor([1./2, 1./math.sqrt(2), 0.]))
|
|
assert F.allclose(new_g.edges[('B', 'r3', 'B')].data['w'], F.tensor([1./3, 2./3, 0.]))
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_ppr(idtype):
|
|
g = dgl.graph(([0, 1, 2, 3, 4], [2, 3, 4, 5, 3]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((6, 2))
|
|
transform = dgl.PPR(avg_degree=2)
|
|
new_g = transform(g)
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (0, 2), (0, 4), (1, 1), (1, 3), (1, 5), (2, 2),
|
|
(2, 3), (2, 4), (3, 3), (3, 5), (4, 3), (4, 4), (4, 5), (5, 5)}
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
assert 'w' in new_g.edata
|
|
|
|
# Prior edge weights
|
|
g.edata['w'] = F.tensor([0.1, 0.2, 0.3, 0.4, 0.5])
|
|
new_g = transform(g)
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (1, 1), (1, 3), (2, 2), (2, 3), (2, 4),
|
|
(3, 3), (3, 5), (4, 3), (4, 4), (4, 5), (5, 5)}
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_heat_kernel(idtype):
|
|
# Case1: directed graph
|
|
g = dgl.graph(([0, 1, 2, 3, 4], [2, 3, 4, 5, 3]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((6, 2))
|
|
transform = dgl.HeatKernel(avg_degree=1)
|
|
new_g = transform(g)
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
assert 'w' in new_g.edata
|
|
|
|
# Case2: weighted undirected graph
|
|
g = dgl.graph(([0, 1, 2, 3], [1, 0, 3, 2]), idtype=idtype, device=F.ctx())
|
|
g.edata['w'] = F.tensor([0.1, 0.2, 0.3, 0.4])
|
|
new_g = transform(g)
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (1, 1), (2, 2), (3, 3)}
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_gdc(idtype):
|
|
transform = dgl.GDC([0.1, 0.2, 0.1], avg_degree=1)
|
|
g = dgl.graph(([0, 1, 2, 3, 4], [2, 3, 4, 5, 3]), idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((6, 2))
|
|
new_g = transform(g)
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.num_nodes() == g.num_nodes()
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (0, 2), (0, 4), (1, 1), (1, 3), (1, 5), (2, 2), (2, 3),
|
|
(2, 4), (3, 3), (3, 5), (4, 3), (4, 4), (4, 5), (5, 5)}
|
|
assert F.allclose(g.ndata['h'], new_g.ndata['h'])
|
|
assert 'w' in new_g.edata
|
|
|
|
# Prior edge weights
|
|
g.edata['w'] = F.tensor([0.1, 0.2, 0.3, 0.4, 0.5])
|
|
new_g = transform(g)
|
|
src, dst = new_g.edges()
|
|
eset = set(zip(list(F.asnumpy(src)), list(F.asnumpy(dst))))
|
|
assert eset == {(0, 0), (1, 1), (2, 2), (3, 3), (4, 3), (4, 4), (5, 5)}
|
|
|
|
@parametrize_idtype
|
|
def test_module_node_shuffle(idtype):
|
|
transform = dgl.NodeShuffle()
|
|
g = dgl.heterograph({
|
|
('A', 'r', 'B'): ([0, 1], [1, 2]),
|
|
}, idtype=idtype, device=F.ctx())
|
|
new_g = transform(g)
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_drop_node(idtype):
|
|
transform = dgl.DropNode()
|
|
g = dgl.heterograph({
|
|
('A', 'r', 'B'): ([0, 1], [1, 2]),
|
|
}, idtype=idtype, device=F.ctx())
|
|
new_g = transform(g)
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.ntypes == g.ntypes
|
|
assert new_g.canonical_etypes == g.canonical_etypes
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_drop_edge(idtype):
|
|
transform = dgl.DropEdge()
|
|
g = dgl.heterograph({
|
|
('A', 'r1', 'B'): ([0, 1], [1, 2]),
|
|
('C', 'r2', 'C'): ([3, 4, 5], [6, 7, 8])
|
|
}, idtype=idtype, device=F.ctx())
|
|
new_g = transform(g)
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.ntypes == g.ntypes
|
|
assert new_g.canonical_etypes == g.canonical_etypes
|
|
|
|
@parametrize_idtype
|
|
def test_module_add_edge(idtype):
|
|
transform = dgl.AddEdge()
|
|
g = dgl.heterograph({
|
|
('A', 'r1', 'B'): ([0, 1, 2, 3, 4], [1, 2, 3, 4, 5]),
|
|
('C', 'r2', 'C'): ([0, 1, 2, 3, 4], [1, 2, 3, 4, 5])
|
|
}, idtype=idtype, device=F.ctx())
|
|
new_g = transform(g)
|
|
assert new_g.num_edges(('A', 'r1', 'B')) == 6
|
|
assert new_g.num_edges(('C', 'r2', 'C')) == 6
|
|
assert new_g.idtype == g.idtype
|
|
assert new_g.device == g.device
|
|
assert new_g.ntypes == g.ntypes
|
|
assert new_g.canonical_etypes == g.canonical_etypes
|
|
|
|
@parametrize_idtype
|
|
def test_module_random_walk_pe(idtype):
|
|
transform = dgl.RandomWalkPE(2, 'rwpe')
|
|
g = dgl.graph(([0, 1, 1], [1, 1, 0]), idtype=idtype, device=F.ctx())
|
|
new_g = transform(g)
|
|
tgt = F.copy_to(F.tensor([[0., 0.5],[0.5, 0.75]]), g.device)
|
|
assert F.allclose(new_g.ndata['rwpe'], tgt)
|
|
|
|
@parametrize_idtype
|
|
def test_module_laplacian_pe(idtype):
|
|
transform = dgl.LaplacianPE(2, 'lappe')
|
|
g = dgl.graph(([2, 1, 0, 3, 1, 1],[3, 0, 1, 3, 3, 1]), idtype=idtype, device=F.ctx())
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new_g = transform(g)
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|
tgt = F.copy_to(F.tensor([[ 0.24971116, 0.],
|
|
[ 0.11771496, 0.],
|
|
[ 0.83237050, 1.],
|
|
[ 0.48056933, 0.]]), g.device)
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# tensorflow has no abs() api
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if dgl.backend.backend_name == 'tensorflow':
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assert F.allclose(new_g.ndata['lappe'].__abs__(), tgt)
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# pytorch & mxnet
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else:
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assert F.allclose(new_g.ndata['lappe'].abs(), tgt)
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|
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@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
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@pytest.mark.parametrize('g', get_cases(['has_scalar_e_feature']))
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def test_module_sign(g):
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import torch
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|
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atol = 1e-06
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|
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ctx = F.ctx()
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g = g.to(ctx)
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adj = g.adj(transpose=True, scipy_fmt='coo').todense()
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adj = torch.tensor(adj).float().to(ctx)
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|
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weight_adj = g.adj(transpose=True, scipy_fmt='coo').astype(float).todense()
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weight_adj = torch.tensor(weight_adj).float().to(ctx)
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src, dst = g.edges()
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src, dst = src.long(), dst.long()
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weight_adj[dst, src] = g.edata['scalar_w']
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|
|
|
# raw
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transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', diffuse_op='raw')
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g = transform(g)
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target = torch.matmul(adj, g.ndata['h'])
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assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', eweight_name='scalar_w', diffuse_op='raw')
|
|
g = transform(g)
|
|
target = torch.matmul(weight_adj, g.ndata['h'])
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
# rw
|
|
adj_rw = torch.matmul(torch.diag(1 / adj.sum(dim=1)), adj)
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', diffuse_op='rw')
|
|
g = transform(g)
|
|
target = torch.matmul(adj_rw, g.ndata['h'])
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
weight_adj_rw = torch.matmul(torch.diag(1 / weight_adj.sum(dim=1)), weight_adj)
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', eweight_name='scalar_w', diffuse_op='rw')
|
|
g = transform(g)
|
|
target = torch.matmul(weight_adj_rw, g.ndata['h'])
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
# gcn
|
|
raw_eweight = g.edata['scalar_w']
|
|
gcn_norm = dgl.GCNNorm()
|
|
g = gcn_norm(g)
|
|
adj_gcn = adj.clone()
|
|
adj_gcn[dst, src] = g.edata.pop('w')
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', diffuse_op='gcn')
|
|
g = transform(g)
|
|
target = torch.matmul(adj_gcn, g.ndata['h'])
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
gcn_norm = dgl.GCNNorm('scalar_w')
|
|
g = gcn_norm(g)
|
|
weight_adj_gcn = weight_adj.clone()
|
|
weight_adj_gcn[dst, src] = g.edata['scalar_w']
|
|
g.edata['scalar_w'] = raw_eweight
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h',
|
|
eweight_name='scalar_w', diffuse_op='gcn')
|
|
g = transform(g)
|
|
target = torch.matmul(weight_adj_gcn, g.ndata['h'])
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
# ppr
|
|
alpha = 0.2
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', diffuse_op='ppr', alpha=alpha)
|
|
g = transform(g)
|
|
target = (1 - alpha) * torch.matmul(adj_gcn, g.ndata['h']) + alpha * g.ndata['h']
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
transform = dgl.SIGNDiffusion(k=1, in_feat_name='h', eweight_name='scalar_w',
|
|
diffuse_op='ppr', alpha=alpha)
|
|
g = transform(g)
|
|
target = (1 - alpha) * torch.matmul(weight_adj_gcn, g.ndata['h']) + alpha * g.ndata['h']
|
|
assert torch.allclose(g.ndata['out_feat_1'], target, atol=atol)
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_row_feat_normalizer(idtype):
|
|
# Case1: Normalize features of a homogeneous graph.
|
|
transform = dgl.RowFeatNormalizer(subtract_min=True,
|
|
node_feat_names=['h'], edge_feat_names=['w'])
|
|
g = dgl.rand_graph(5, 5, idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.randn((g.num_nodes(), 128))
|
|
g.edata['w'] = F.randn((g.num_edges(), 128))
|
|
g = transform(g)
|
|
assert g.ndata['h'].shape == (g.num_nodes(), 128)
|
|
assert g.edata['w'].shape == (g.num_edges(), 128)
|
|
assert F.allclose(g.ndata['h'].sum(1), F.tensor([1.0, 1.0, 1.0, 1.0, 1.0]))
|
|
assert F.allclose(g.edata['w'].sum(1), F.tensor([1.0, 1.0, 1.0, 1.0, 1.0]))
|
|
|
|
# Case2: Normalize features of a heterogeneous graph.
|
|
transform = dgl.RowFeatNormalizer(subtract_min=True,
|
|
node_feat_names=['h', 'h2'], edge_feat_names=['w'])
|
|
g = dgl.heterograph({
|
|
('user', 'follows', 'user'): (F.tensor([1, 2]), F.tensor([3, 4])),
|
|
('player', 'plays', 'game'): (F.tensor([2, 2]), F.tensor([1, 1]))
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = {'game': F.randn((2, 128)), 'player': F.randn((3, 128))}
|
|
g.ndata['h2'] = {'user': F.randn((5, 128))}
|
|
g.edata['w'] = {('user', 'follows', 'user'): F.randn((2, 128)), ('player', 'plays', 'game'): F.randn((2, 128))}
|
|
g = transform(g)
|
|
assert g.ndata['h']['game'].shape == (2, 128)
|
|
assert g.ndata['h']['player'].shape == (3, 128)
|
|
assert g.ndata['h2']['user'].shape == (5, 128)
|
|
assert g.edata['w'][('user', 'follows', 'user')].shape == (2, 128)
|
|
assert g.edata['w'][('player', 'plays', 'game')].shape == (2, 128)
|
|
assert F.allclose(g.ndata['h']['game'].sum(1), F.tensor([1.0, 1.0]))
|
|
assert F.allclose(g.ndata['h']['player'].sum(1), F.tensor([1.0, 1.0, 1.0]))
|
|
assert F.allclose(g.ndata['h2']['user'].sum(1), F.tensor([1.0, 1.0, 1.0, 1.0, 1.0]))
|
|
assert F.allclose(g.edata['w'][('user', 'follows', 'user')].sum(1), F.tensor([1.0, 1.0]))
|
|
assert F.allclose(g.edata['w'][('player', 'plays', 'game')].sum(1), F.tensor([1.0, 1.0]))
|
|
|
|
@unittest.skipIf(dgl.backend.backend_name != 'pytorch', reason='Only support PyTorch for now')
|
|
@parametrize_idtype
|
|
def test_module_feat_mask(idtype):
|
|
# Case1: Mask node and edge feature tensors of a homogeneous graph.
|
|
transform = dgl.FeatMask(node_feat_names=['h'], edge_feat_names=['w'])
|
|
g = dgl.rand_graph(5, 20, idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = F.ones((g.num_nodes(), 10))
|
|
g.edata['w'] = F.ones((g.num_edges(), 20))
|
|
g = transform(g)
|
|
assert g.device == g.device
|
|
assert g.idtype == g.idtype
|
|
assert g.ndata['h'].shape == (g.num_nodes(), 10)
|
|
assert g.edata['w'].shape == (g.num_edges(), 20)
|
|
|
|
# Case2: Mask node and edge feature tensors of a heterogeneous graph.
|
|
g = dgl.heterograph({
|
|
('user', 'follows', 'user'): (F.tensor([1, 2]), F.tensor([3, 4])),
|
|
('player', 'plays', 'game'): (F.tensor([2, 2]), F.tensor([1, 1]))
|
|
}, idtype=idtype, device=F.ctx())
|
|
g.ndata['h'] = {'game': F.randn((2, 5)), 'player': F.randn((3, 5))}
|
|
g.edata['w'] = {('user', 'follows', 'user'): F.randn((2, 5)),
|
|
('player', 'plays', 'game'): F.randn((2, 5))}
|
|
g = transform(g)
|
|
assert g.device == g.device
|
|
assert g.idtype == g.idtype
|
|
assert g.ndata['h']['game'].shape == (2, 5)
|
|
assert g.ndata['h']['player'].shape == (3, 5)
|
|
assert g.edata['w'][('user', 'follows', 'user')].shape == (2, 5)
|
|
assert g.edata['w'][('player', 'plays', 'game')].shape == (2, 5)
|
|
|
|
if __name__ == '__main__':
|
|
test_partition_with_halo()
|
|
test_module_heat_kernel(F.int32)
|