dmlc--dgl
6d9433b04f
* Update * Update * Update * Fix * Update * Update * Update * Fix
162 行
6.4 KiB
Python
162 行
6.4 KiB
Python
"""Heterogeneous Graph Transformer"""
|
|
# pylint: disable= no-member, arguments-differ, invalid-name
|
|
import math
|
|
import torch
|
|
import torch.nn as nn
|
|
|
|
from .... import function as fn
|
|
from ..linear import TypedLinear
|
|
from ..softmax import edge_softmax
|
|
|
|
class HGTConv(nn.Module):
|
|
r"""Heterogeneous graph transformer convolution from `Heterogeneous Graph Transformer
|
|
<https://arxiv.org/abs/2003.01332>`__
|
|
|
|
Given a graph :math:`G(V, E)` and input node features :math:`H^{(l-1)}`,
|
|
it computes the new node features as follows:
|
|
|
|
Compute a multi-head attention score for each edge :math:`(s, e, t)` in the graph:
|
|
|
|
.. math::
|
|
|
|
Attention(s, e, t) = \text{Softmax}\left(||_{i\in[1,h]}ATT-head^i(s, e, t)\right) \\
|
|
ATT-head^i(s, e, t) = \left(K^i(s)W^{ATT}_{\phi(e)}Q^i(t)^{\top}\right)\cdot
|
|
\frac{\mu_{(\tau(s),\phi(e),\tau(t)}}{\sqrt{d}} \\
|
|
K^i(s) = \text{K-Linear}^i_{\tau(s)}(H^{(l-1)}[s]) \\
|
|
Q^i(t) = \text{Q-Linear}^i_{\tau(t)}(H^{(l-1)}[t]) \\
|
|
|
|
Compute the message to send on each edge :math:`(s, e, t)`:
|
|
|
|
.. math::
|
|
|
|
Message(s, e, t) = ||_{i\in[1, h]} MSG-head^i(s, e, t) \\
|
|
MSG-head^i(s, e, t) = \text{M-Linear}^i_{\tau(s)}(H^{(l-1)}[s])W^{MSG}_{\phi(e)} \\
|
|
|
|
Send messages to target nodes :math:`t` and aggregate:
|
|
|
|
.. math::
|
|
|
|
\tilde{H}^{(l)}[t] = \sum_{\forall s\in \mathcal{N}(t)}\left( Attention(s,e,t)
|
|
\cdot Message(s,e,t)\right)
|
|
|
|
Compute new node features:
|
|
|
|
.. math::
|
|
|
|
H^{(l)}[t]=\text{A-Linear}_{\tau(t)}(\sigma(\tilde(H)^{(l)}[t])) + H^{(l-1)}[t]
|
|
|
|
Parameters
|
|
----------
|
|
in_size : int
|
|
Input node feature size.
|
|
head_size : int
|
|
Output head size. The output node feature size is ``head_size * num_heads``.
|
|
num_heads : int
|
|
Number of heads. The output node feature size is ``head_size * num_heads``.
|
|
num_ntypes : int
|
|
Number of node types.
|
|
num_etypes : int
|
|
Number of edge types.
|
|
dropout : optional, float
|
|
Dropout rate.
|
|
use_norm : optiona, bool
|
|
If true, apply a layer norm on the output node feature.
|
|
|
|
Examples
|
|
--------
|
|
"""
|
|
def __init__(self,
|
|
in_size,
|
|
head_size,
|
|
num_heads,
|
|
num_ntypes,
|
|
num_etypes,
|
|
dropout=0.2,
|
|
use_norm=False):
|
|
super().__init__()
|
|
self.in_size = in_size
|
|
self.head_size = head_size
|
|
self.num_heads = num_heads
|
|
self.sqrt_d = math.sqrt(head_size)
|
|
self.use_norm = use_norm
|
|
|
|
self.linear_k = TypedLinear(in_size, head_size * num_heads, num_ntypes)
|
|
self.linear_q = TypedLinear(in_size, head_size * num_heads, num_ntypes)
|
|
self.linear_v = TypedLinear(in_size, head_size * num_heads, num_ntypes)
|
|
self.linear_a = TypedLinear(head_size * num_heads, head_size * num_heads, num_ntypes)
|
|
|
|
self.relation_pri = nn.ParameterList([nn.Parameter(torch.ones(num_etypes))
|
|
for i in range(num_heads)])
|
|
self.relation_att = nn.ModuleList([TypedLinear(head_size, head_size, num_etypes)
|
|
for i in range(num_heads)])
|
|
self.relation_msg = nn.ModuleList([TypedLinear(head_size, head_size, num_etypes)
|
|
for i in range(num_heads)])
|
|
self.skip = nn.Parameter(torch.ones(num_ntypes))
|
|
self.drop = nn.Dropout(dropout)
|
|
if use_norm:
|
|
self.norm = nn.LayerNorm(head_size * num_heads)
|
|
if in_size != head_size * num_heads:
|
|
self.residual_w = nn.Parameter(torch.Tensor(in_size, head_size * num_heads))
|
|
nn.init.xavier_uniform_(self.residual_w)
|
|
|
|
def forward(self, g, x, ntype, etype, *, presorted=False):
|
|
"""Forward computation.
|
|
|
|
Parameters
|
|
----------
|
|
g : DGLGraph
|
|
The input graph.
|
|
x : torch.Tensor
|
|
A 2D tensor of node features. Shape: :math:`(|V|, D_{in})`.
|
|
ntype : torch.Tensor
|
|
An 1D integer tensor of node types. Shape: :math:`(|V|,)`.
|
|
etype : torch.Tensor
|
|
An 1D integer tensor of edge types. Shape: :math:`(|E|,)`.
|
|
presorted : bool, optional
|
|
Whether *both* the nodes and the edges of the input graph have been sorted by
|
|
their types. Forward on pre-sorted graph may be faster. Graphs created by
|
|
:func:`~dgl.to_homogeneous` automatically satisfy the condition.
|
|
Also see :func:`~dgl.reorder_graph` for manually reordering the nodes and edges.
|
|
|
|
Returns
|
|
-------
|
|
torch.Tensor
|
|
New node features. Shape: :math:`(|V|, D_{head} * N_{head})`.
|
|
"""
|
|
self.presorted = presorted
|
|
with g.local_scope():
|
|
k = self.linear_k(x, ntype, presorted).view(-1, self.num_heads, self.head_size)
|
|
q = self.linear_q(x, ntype, presorted).view(-1, self.num_heads, self.head_size)
|
|
v = self.linear_v(x, ntype, presorted).view(-1, self.num_heads, self.head_size)
|
|
g.srcdata['k'] = k
|
|
g.dstdata['q'] = q
|
|
g.srcdata['v'] = v
|
|
g.edata['etype'] = etype
|
|
g.apply_edges(self.message)
|
|
g.edata['m'] = g.edata['m'] * edge_softmax(g, g.edata['a']).unsqueeze(-1)
|
|
g.update_all(fn.copy_e('m', 'm'), fn.sum('m', 'h'))
|
|
h = g.dstdata['h'].view(-1, self.num_heads * self.head_size)
|
|
# target-specific aggregation
|
|
h = self.drop(self.linear_a(h, ntype, presorted))
|
|
alpha = torch.sigmoid(self.skip[ntype]).unsqueeze(-1)
|
|
if x.shape != h.shape:
|
|
h = h * alpha + (x @ self.residual_w) * (1 - alpha)
|
|
else:
|
|
h = h * alpha + x * (1 - alpha)
|
|
if self.use_norm:
|
|
h = self.norm(h)
|
|
return h
|
|
|
|
def message(self, edges):
|
|
"""Message function."""
|
|
a, m = [], []
|
|
etype = edges.data['etype']
|
|
k = torch.unbind(edges.src['k'], dim=1)
|
|
q = torch.unbind(edges.dst['q'], dim=1)
|
|
v = torch.unbind(edges.src['v'], dim=1)
|
|
for i in range(self.num_heads):
|
|
kw = self.relation_att[i](k[i], etype, self.presorted) # (E, O)
|
|
a.append((kw * q[i]).sum(-1) * self.relation_pri[i][etype] / self.sqrt_d) # (E,)
|
|
m.append(self.relation_msg[i](v[i], etype, self.presorted)) # (E, O)
|
|
return {'a' : torch.stack(a, dim=1), 'm' : torch.stack(m, dim=1)}
|