dmlc--dgl
9f32554296
* change the signature of node/edge filter * upd filter * Support multi-dimension node feature in SPMV * push transformer * remove some experimental settings * stable version * hotfix * upd tutorial * upd README * merge * remove redundency * remove tqdm * several changes * Refactor * Refactor * tutorial train * fixed a bug * fixed perf issue * upd * change dir * move un-related to contrib * tutuorial code * remove redundency * upd * upd * upd * upd * improve viz * universal done * halt norm * fixed a bug * add draw graph * fixed several bugs * remove dependency on core * upd format of README * trigger * trigger * upd viz * trigger * add transformer tutorial * fix tutorial * fix readme * small fix on tutorials * url fix in readme * fixed func link * upd
217 行
8.7 KiB
Python
217 行
8.7 KiB
Python
from .attention import *
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from .layers import *
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from .functions import *
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from .embedding import *
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import torch as th
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import dgl.function as fn
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import torch.nn.init as INIT
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class UEncoder(nn.Module):
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def __init__(self, layer):
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super(UEncoder, self).__init__()
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self.layer = layer
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self.norm = LayerNorm(layer.size)
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def pre_func(self, fields='qkv'):
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layer = self.layer
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def func(nodes):
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x = nodes.data['x']
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norm_x = layer.sublayer[0].norm(x)
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return layer.self_attn.get(norm_x, fields=fields)
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return func
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def post_func(self):
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layer = self.layer
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def func(nodes):
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x, wv, z = nodes.data['x'], nodes.data['wv'], nodes.data['z']
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o = layer.self_attn.get_o(wv / z)
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x = x + layer.sublayer[0].dropout(o)
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x = layer.sublayer[1](x, layer.feed_forward)
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return {'x': x}
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return func
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class UDecoder(nn.Module):
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def __init__(self, layer):
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super(UDecoder, self).__init__()
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self.layer = layer
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self.norm = LayerNorm(layer.size)
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def pre_func(self, fields='qkv', l=0):
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layer = self.layer
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def func(nodes):
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x = nodes.data['x']
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if fields == 'kv':
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norm_x = x
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else:
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norm_x = layer.sublayer[l].norm(x)
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return layer.self_attn.get(norm_x, fields)
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return func
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def post_func(self, l=0):
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layer = self.layer
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def func(nodes):
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x, wv, z = nodes.data['x'], nodes.data['wv'], nodes.data['z']
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o = layer.self_attn.get_o(wv / z)
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x = x + layer.sublayer[l].dropout(o)
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if l == 1:
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x = layer.sublayer[2](x, layer.feed_forward)
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return {'x': x}
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return func
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class HaltingUnit(nn.Module):
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halting_bias_init = 1.0
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def __init__(self, dim_model):
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super(HaltingUnit, self).__init__()
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self.linear = nn.Linear(dim_model, 1)
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self.norm = LayerNorm(dim_model)
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INIT.constant_(self.linear.bias, self.halting_bias_init)
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def forward(self, x):
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return th.sigmoid(self.linear(self.norm(x)))
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class UTransformer(nn.Module):
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"Universal Transformer(https://arxiv.org/pdf/1807.03819.pdf) with ACT(https://arxiv.org/pdf/1603.08983.pdf)."
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MAX_DEPTH = 8
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thres = 0.99
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act_loss_weight = 0.01
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def __init__(self, encoder, decoder, src_embed, tgt_embed, pos_enc, time_enc, generator, h, d_k):
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super(UTransformer, self).__init__()
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self.encoder, self.decoder = encoder, decoder
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self.src_embed, self.tgt_embed = src_embed, tgt_embed
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self.pos_enc, self.time_enc = pos_enc, time_enc
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self.halt_enc = HaltingUnit(h * d_k)
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self.halt_dec = HaltingUnit(h * d_k)
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self.generator = generator
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self.h, self.d_k = h, d_k
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self.reset_stat()
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def reset_stat(self):
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self.stat = [0] * (self.MAX_DEPTH + 1)
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def step_forward(self, nodes):
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x = nodes.data['x']
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step = nodes.data['step']
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pos = nodes.data['pos']
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return {'x': self.pos_enc.dropout(x + self.pos_enc(pos.view(-1)) + self.time_enc(step.view(-1))),
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'step': step + 1}
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def halt_and_accum(self, name, end=False):
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"field: 'enc' or 'dec'"
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halt = self.halt_enc if name == 'enc' else self.halt_dec
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thres = self.thres
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def func(nodes):
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p = halt(nodes.data['x'])
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sum_p = nodes.data['sum_p'] + p
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active = (sum_p < thres) & (1 - end)
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_continue = active.float()
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r = nodes.data['r'] * (1 - _continue) + (1 - sum_p) * _continue
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s = nodes.data['s'] + ((1 - _continue) * r + _continue * p) * nodes.data['x']
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return {'p': p, 'sum_p': sum_p, 'r': r, 's': s, 'active': active}
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return func
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def propagate_attention(self, g, eids):
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# Compute attention score
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g.apply_edges(src_dot_dst('k', 'q', 'score'), eids)
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g.apply_edges(scaled_exp('score', np.sqrt(self.d_k)), eids)
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# Send weighted values to target nodes
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g.send_and_recv(eids,
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[fn.src_mul_edge('v', 'score', 'v'), fn.copy_edge('score', 'score')],
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[fn.sum('v', 'wv'), fn.sum('score', 'z')])
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def update_graph(self, g, eids, pre_pairs, post_pairs):
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"Update the node states and edge states of the graph."
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# Pre-compute queries and key-value pairs.
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for pre_func, nids in pre_pairs:
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g.apply_nodes(pre_func, nids)
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self.propagate_attention(g, eids)
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# Further calculation after attention mechanism
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for post_func, nids in post_pairs:
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g.apply_nodes(post_func, nids)
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def forward(self, graph):
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g = graph.g
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N, E = graph.n_nodes, graph.n_edges
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nids, eids = graph.nids, graph.eids
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# embed & pos
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g.nodes[nids['enc']].data['x'] = self.src_embed(graph.src[0])
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g.nodes[nids['dec']].data['x'] = self.tgt_embed(graph.tgt[0])
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g.nodes[nids['enc']].data['pos'] = graph.src[1]
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g.nodes[nids['dec']].data['pos'] = graph.tgt[1]
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# init step
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device = next(self.parameters()).device
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g.ndata['s'] = th.zeros(N, self.h * self.d_k, dtype=th.float, device=device) # accumulated state
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g.ndata['p'] = th.zeros(N, 1, dtype=th.float, device=device) # halting prob
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g.ndata['r'] = th.ones(N, 1, dtype=th.float, device=device) # remainder
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g.ndata['sum_p'] = th.zeros(N, 1, dtype=th.float, device=device) # sum of pondering values
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g.ndata['step'] = th.zeros(N, 1, dtype=th.long, device=device) # step
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g.ndata['active'] = th.ones(N, 1, dtype=th.uint8, device=device) # active
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for step in range(self.MAX_DEPTH):
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pre_func = self.encoder.pre_func('qkv')
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post_func = self.encoder.post_func()
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nodes = g.filter_nodes(lambda v: v.data['active'].view(-1), nids['enc'])
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if len(nodes) == 0: break
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edges = g.filter_edges(lambda e: e.dst['active'].view(-1), eids['ee'])
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end = step == self.MAX_DEPTH - 1
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self.update_graph(g, edges,
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[(self.step_forward, nodes), (pre_func, nodes)],
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[(post_func, nodes), (self.halt_and_accum('enc', end), nodes)])
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g.nodes[nids['enc']].data['x'] = self.encoder.norm(g.nodes[nids['enc']].data['s'])
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for step in range(self.MAX_DEPTH):
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pre_func = self.decoder.pre_func('qkv')
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post_func = self.decoder.post_func()
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nodes = g.filter_nodes(lambda v: v.data['active'].view(-1), nids['dec'])
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if len(nodes) == 0: break
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edges = g.filter_edges(lambda e: e.dst['active'].view(-1), eids['dd'])
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self.update_graph(g, edges,
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[(self.step_forward, nodes), (pre_func, nodes)],
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[(post_func, nodes)])
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pre_q = self.decoder.pre_func('q', 1)
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pre_kv = self.decoder.pre_func('kv', 1)
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post_func = self.decoder.post_func(1)
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nodes_e = nids['enc']
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edges = g.filter_edges(lambda e: e.dst['active'].view(-1), eids['ed'])
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end = step == self.MAX_DEPTH - 1
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self.update_graph(g, edges,
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[(pre_q, nodes), (pre_kv, nodes_e)],
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[(post_func, nodes), (self.halt_and_accum('dec', end), nodes)])
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g.nodes[nids['dec']].data['x'] = self.decoder.norm(g.nodes[nids['dec']].data['s'])
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act_loss = th.mean(g.ndata['r']) # ACT loss
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self.stat[0] += N
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for step in range(1, self.MAX_DEPTH + 1):
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self.stat[step] += th.sum(g.ndata['step'] >= step).item()
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return self.generator(g.ndata['x'][nids['dec']]), act_loss * self.act_loss_weight
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def infer(self, *args, **kwargs):
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raise NotImplementedError
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def make_universal_model(src_vocab, tgt_vocab, dim_model=512, dim_ff=2048, h=8, dropout=0.1):
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c = copy.deepcopy
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attn = MultiHeadAttention(h, dim_model)
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ff = PositionwiseFeedForward(dim_model, dim_ff)
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pos_enc = PositionalEncoding(dim_model, dropout)
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time_enc = PositionalEncoding(dim_model, dropout)
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encoder = UEncoder(EncoderLayer((dim_model), c(attn), c(ff), dropout))
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decoder = UDecoder(DecoderLayer((dim_model), c(attn), c(attn), c(ff), dropout))
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src_embed = Embeddings(src_vocab, dim_model)
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tgt_embed = Embeddings(tgt_vocab, dim_model)
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generator = Generator(dim_model, tgt_vocab)
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model = UTransformer(
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encoder, decoder, src_embed, tgt_embed, pos_enc, time_enc, generator, h, dim_model // h)
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# xavier init
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for p in model.parameters():
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if p.dim() > 1:
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INIT.xavier_uniform_(p)
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return model
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