dmlc--dgl
6e1be69a84
* Refactor gat example * Add ppi support * Minor update * Update * Update * Change valid_xxx to val_xxx * Readme Update * Update Co-authored-by: Mufei Li <mufeili1996@gmail.com>
93 行
3.4 KiB
Python
93 行
3.4 KiB
Python
import torch
|
|
import torch.nn as nn
|
|
import torch.nn.functional as F
|
|
import dgl.nn as dglnn
|
|
from dgl.data import CoraGraphDataset, CiteseerGraphDataset, PubmedGraphDataset
|
|
from dgl import AddSelfLoop
|
|
import argparse
|
|
|
|
class GAT(nn.Module):
|
|
def __init__(self,in_size, hid_size, out_size, heads):
|
|
super().__init__()
|
|
self.gat_layers = nn.ModuleList()
|
|
# two-layer GAT
|
|
self.gat_layers.append(dglnn.GATConv(in_size, hid_size, heads[0], feat_drop=0.6, attn_drop=0.6, activation=F.elu))
|
|
self.gat_layers.append(dglnn.GATConv(hid_size*heads[0], out_size, heads[1], feat_drop=0.6, attn_drop=0.6, activation=None))
|
|
|
|
def forward(self, g, inputs):
|
|
h = inputs
|
|
for i, layer in enumerate(self.gat_layers):
|
|
h = layer(g, h)
|
|
if i == 1: # last layer
|
|
h = h.mean(1)
|
|
else: # other layer(s)
|
|
h = h.flatten(1)
|
|
return h
|
|
|
|
def evaluate(g, features, labels, mask, model):
|
|
model.eval()
|
|
with torch.no_grad():
|
|
logits = model(g, features)
|
|
logits = logits[mask]
|
|
labels = labels[mask]
|
|
_, indices = torch.max(logits, dim=1)
|
|
correct = torch.sum(indices == labels)
|
|
return correct.item() * 1.0 / len(labels)
|
|
|
|
def train(g, features, labels, masks, model):
|
|
# define train/val samples, loss function and optimizer
|
|
train_mask = masks[0]
|
|
val_mask = masks[1]
|
|
loss_fcn = nn.CrossEntropyLoss()
|
|
optimizer = torch.optim.Adam(model.parameters(), lr=5e-3, weight_decay=5e-4)
|
|
|
|
#training loop
|
|
for epoch in range(200):
|
|
model.train()
|
|
logits = model(g, features)
|
|
loss = loss_fcn(logits[train_mask], labels[train_mask])
|
|
optimizer.zero_grad()
|
|
loss.backward()
|
|
optimizer.step()
|
|
acc = evaluate(g, features, labels, val_mask, model)
|
|
print("Epoch {:05d} | Loss {:.4f} | Accuracy {:.4f} "
|
|
. format(epoch, loss.item(), acc))
|
|
|
|
if __name__ == '__main__':
|
|
parser = argparse.ArgumentParser()
|
|
parser.add_argument("--dataset", type=str, default="cora",
|
|
help="Dataset name ('cora', 'citeseer', 'pubmed').")
|
|
args = parser.parse_args()
|
|
print(f'Training with DGL built-in GATConv module.')
|
|
|
|
# load and preprocess dataset
|
|
transform = AddSelfLoop() # by default, it will first remove self-loops to prevent duplication
|
|
if args.dataset == 'cora':
|
|
data = CoraGraphDataset(transform=transform)
|
|
elif args.dataset == 'citeseer':
|
|
data = CiteseerGraphDataset(transform=transform)
|
|
elif args.dataset == 'pubmed':
|
|
data = PubmedGraphDataset(transform=transform)
|
|
else:
|
|
raise ValueError('Unknown dataset: {}'.format(args.dataset))
|
|
g = data[0]
|
|
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
|
|
g = g.int().to(device)
|
|
features = g.ndata['feat']
|
|
labels = g.ndata['label']
|
|
masks = g.ndata['train_mask'], g.ndata['val_mask'], g.ndata['test_mask']
|
|
|
|
# create GAT model
|
|
in_size = features.shape[1]
|
|
out_size = data.num_classes
|
|
model = GAT(in_size, 8, out_size, heads=[8,1]).to(device)
|
|
|
|
# model training
|
|
print('Training...')
|
|
train(g, features, labels, masks, model)
|
|
|
|
# test the model
|
|
print('Testing...')
|
|
acc = evaluate(g, features, labels, masks[2], model)
|
|
print("Test accuracy {:.4f}".format(acc))
|