项目文件夹

文件
Minjie Wang 44089c8b4d [Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:30:41 +08:00

75 行
2.7 KiB
Python

import torch.nn as nn
import torch as th
import torch.nn.functional as F
import dgl
class DGLRoutingLayer(nn.Module):
def __init__(self, in_nodes, out_nodes, f_size, batch_size=0, device='cpu'):
super(DGLRoutingLayer, self).__init__()
self.batch_size = batch_size
self.g = init_graph(in_nodes, out_nodes, f_size, device=device)
self.in_nodes = in_nodes
self.out_nodes = out_nodes
self.in_indx = list(range(in_nodes))
self.out_indx = list(range(in_nodes, in_nodes + out_nodes))
self.device = device
def forward(self, u_hat, routing_num=1):
self.g.edata['u_hat'] = u_hat
batch_size = self.batch_size
# step 2 (line 5)
def cap_message(edges):
if batch_size:
return {'m': edges.data['c'].unsqueeze(1) * edges.data['u_hat']}
else:
return {'m': edges.data['c'] * edges.data['u_hat']}
def cap_reduce(nodes):
return {'s': th.sum(nodes.mailbox['m'], dim=1)}
for r in range(routing_num):
# step 1 (line 4): normalize over out edges
edges_b = self.g.edata['b'].view(self.in_nodes, self.out_nodes)
self.g.edata['c'] = F.softmax(edges_b, dim=1).view(-1, 1)
# Execute step 1 & 2
self.g.update_all(message_func=cap_message, reduce_func=cap_reduce)
# step 3 (line 6)
if self.batch_size:
self.g.nodes[self.out_indx].data['v'] = squash(self.g.nodes[self.out_indx].data['s'], dim=2)
else:
self.g.nodes[self.out_indx].data['v'] = squash(self.g.nodes[self.out_indx].data['s'], dim=1)
# step 4 (line 7)
v = th.cat([self.g.nodes[self.out_indx].data['v']] * self.in_nodes, dim=0)
if self.batch_size:
self.g.edata['b'] = self.g.edata['b'] + (self.g.edata['u_hat'] * v).mean(dim=1).sum(dim=1, keepdim=True)
else:
self.g.edata['b'] = self.g.edata['b'] + (self.g.edata['u_hat'] * v).sum(dim=1, keepdim=True)
def squash(s, dim=1):
sq = th.sum(s ** 2, dim=dim, keepdim=True)
s_norm = th.sqrt(sq)
s = (sq / (1.0 + sq)) * (s / s_norm)
return s
def init_graph(in_nodes, out_nodes, f_size, device='cpu'):
g = dgl.DGLGraph()
g.set_n_initializer(dgl.frame.zero_initializer)
all_nodes = in_nodes + out_nodes
g.add_nodes(all_nodes)
in_indx = list(range(in_nodes))
out_indx = list(range(in_nodes, in_nodes + out_nodes))
# add edges use edge broadcasting
for u in in_indx:
g.add_edges(u, out_indx)
g = g.to(device)
g.edata['b'] = th.zeros(in_nodes * out_nodes, 1).to(device)
return g