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Chao Ma 635dfb4a59 [DGL-KE] Add license to every file header (#1368)
* update metis

* update

* update dataloader

* update dataloader

* new script

* update

* update

* update

* update

* update

* update

* update

* update dataloader

* update

* update

* update

* update

* update

* update

* update

* Add license to every filer header
2020-03-17 17:46:18 +08:00

285 行
13 KiB
Python

# -*- coding: utf-8 -*-
#
# setup.py
#
# Copyright 2018 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import os
import argparse
import time
import logging
import socket
if os.name != 'nt':
import fcntl
import struct
import torch.multiprocessing as mp
from train_pytorch import load_model, dist_train_test
from utils import get_compatible_batch_size
from train import get_logger
from dataloader import TrainDataset, NewBidirectionalOneShotIterator
from dataloader import get_dataset, get_partition_dataset
import dgl
import dgl.backend as F
WAIT_TIME = 10
class ArgParser(argparse.ArgumentParser):
def __init__(self):
super(ArgParser, self).__init__()
self.add_argument('--model_name', default='TransE',
choices=['TransE', 'TransE_l1', 'TransE_l2', 'TransR',
'RESCAL', 'DistMult', 'ComplEx', 'RotatE'],
help='model to use')
self.add_argument('--data_path', type=str, default='../data',
help='root path of all dataset')
self.add_argument('--dataset', type=str, default='FB15k',
help='dataset name, under data_path')
self.add_argument('--format', type=str, default='built_in',
help='the format of the dataset, it can be built_in,'\
'raw_udd_{htr} and udd_{htr}')
self.add_argument('--save_path', type=str, default='../ckpts',
help='place to save models and logs')
self.add_argument('--save_emb', type=str, default=None,
help='save the embeddings in the specific location.')
self.add_argument('--max_step', type=int, default=80000,
help='train xx steps')
self.add_argument('--batch_size', type=int, default=1024,
help='batch size')
self.add_argument('--batch_size_eval', type=int, default=8,
help='batch size used for eval and test')
self.add_argument('--neg_sample_size', type=int, default=128,
help='negative sampling size')
self.add_argument('--neg_deg_sample', action='store_true',
help='negative sample proportional to vertex degree in the training')
self.add_argument('--neg_deg_sample_eval', action='store_true',
help='negative sampling proportional to vertex degree in the evaluation')
self.add_argument('--neg_sample_size_eval', type=int, default=-1,
help='negative sampling size for evaluation')
self.add_argument('--hidden_dim', type=int, default=256,
help='hidden dim used by relation and entity')
self.add_argument('--lr', type=float, default=0.0001,
help='learning rate')
self.add_argument('-g', '--gamma', type=float, default=12.0,
help='margin value')
self.add_argument('--no_eval_filter', action='store_true',
help='do not filter positive edges among negative edges for evaluation')
self.add_argument('--gpu', type=int, default=[-1], nargs='+',
help='a list of active gpu ids, e.g. 0 1 2 4')
self.add_argument('--mix_cpu_gpu', action='store_true',
help='mix CPU and GPU training')
self.add_argument('-de', '--double_ent', action='store_true',
help='double entitiy dim for complex number')
self.add_argument('-dr', '--double_rel', action='store_true',
help='double relation dim for complex number')
self.add_argument('-log', '--log_interval', type=int, default=1000,
help='do evaluation after every x steps')
self.add_argument('--eval_interval', type=int, default=10000,
help='do evaluation after every x steps')
self.add_argument('--eval_percent', type=float, default=1,
help='sample some percentage for evaluation.')
self.add_argument('-adv', '--neg_adversarial_sampling', action='store_true',
help='if use negative adversarial sampling')
self.add_argument('-a', '--adversarial_temperature', default=1.0, type=float,
help='adversarial_temperature')
self.add_argument('--valid', action='store_true',
help='if valid a model')
self.add_argument('--test', action='store_true',
help='if test a model')
self.add_argument('-rc', '--regularization_coef', type=float, default=0.000002,
help='set value > 0.0 if regularization is used')
self.add_argument('-rn', '--regularization_norm', type=int, default=3,
help='norm used in regularization')
self.add_argument('--non_uni_weight', action='store_true',
help='if use uniform weight when computing loss')
self.add_argument('--pickle_graph', action='store_true',
help='pickle built graph, building a huge graph is slow.')
self.add_argument('--num_proc', type=int, default=1,
help='number of process used')
self.add_argument('--num_thread', type=int, default=1,
help='number of thread used')
self.add_argument('--rel_part', action='store_true',
help='enable relation partitioning')
self.add_argument('--soft_rel_part', action='store_true',
help='enable soft relation partition')
self.add_argument('--async_update', action='store_true',
help='allow async_update on node embedding')
self.add_argument('--force_sync_interval', type=int, default=-1,
help='We force a synchronization between processes every x steps')
self.add_argument('--machine_id', type=int, default=0,
help='Unique ID of current machine.')
self.add_argument('--total_machine', type=int, default=1,
help='Total number of machine.')
self.add_argument('--ip_config', type=str, default='ip_config.txt',
help='IP configuration file of kvstore')
self.add_argument('--num_client', type=int, default=1,
help='Number of client on each machine.')
def get_long_tail_partition(n_relations, n_machine):
"""Relation types has a long tail distribution for many dataset.
So we need to average shuffle the data before we partition it.
"""
assert n_relations > 0, 'n_relations must be a positive number.'
assert n_machine > 0, 'n_machine must be a positive number.'
partition_book = [0] * n_relations
part_id = 0
for i in range(n_relations):
partition_book[i] = part_id
part_id += 1
if part_id == n_machine:
part_id = 0
return partition_book
def local_ip4_addr_list():
"""Return a set of IPv4 address
"""
nic = set()
for ix in socket.if_nameindex():
name = ix[1]
s = socket.socket(socket.AF_INET, socket.SOCK_DGRAM)
ip = socket.inet_ntoa(fcntl.ioctl(
s.fileno(),
0x8915, # SIOCGIFADDR
struct.pack('256s', name[:15].encode("UTF-8")))[20:24])
nic.add(ip)
return nic
def get_local_machine_id(server_namebook):
"""Get machine ID via server_namebook
"""
assert len(server_namebook) > 0, 'server_namebook cannot be empty.'
res = 0
for ID, data in server_namebook.items():
machine_id = data[0]
ip = data[1]
if ip in local_ip4_addr_list():
res = machine_id
break
return res
def start_worker(args, logger):
"""Start kvclient for training
"""
init_time_start = time.time()
time.sleep(WAIT_TIME) # wait for launch script
server_namebook = dgl.contrib.read_ip_config(filename=args.ip_config)
args.machine_id = get_local_machine_id(server_namebook)
dataset, entity_partition_book, local2global = get_partition_dataset(
args.data_path,
args.dataset,
args.machine_id)
n_entities = dataset.n_entities
n_relations = dataset.n_relations
print('Partition %d n_entities: %d' % (args.machine_id, n_entities))
print("Partition %d n_relations: %d" % (args.machine_id, n_relations))
entity_partition_book = F.tensor(entity_partition_book)
relation_partition_book = get_long_tail_partition(dataset.n_relations, args.total_machine)
relation_partition_book = F.tensor(relation_partition_book)
local2global = F.tensor(local2global)
relation_partition_book.share_memory_()
entity_partition_book.share_memory_()
local2global.share_memory_()
train_data = TrainDataset(dataset, args, ranks=args.num_client)
# if there is no cross partition relaiton, we fall back to strict_rel_part
args.strict_rel_part = args.mix_cpu_gpu and (train_data.cross_part == False)
args.soft_rel_part = args.mix_cpu_gpu and args.soft_rel_part and train_data.cross_part
if args.neg_sample_size_eval < 0:
args.neg_sample_size_eval = dataset.n_entities
args.batch_size = get_compatible_batch_size(args.batch_size, args.neg_sample_size)
args.batch_size_eval = get_compatible_batch_size(args.batch_size_eval, args.neg_sample_size_eval)
args.num_workers = 8 # fix num_workers to 8
train_samplers = []
for i in range(args.num_client):
train_sampler_head = train_data.create_sampler(args.batch_size,
args.neg_sample_size,
args.neg_sample_size,
mode='head',
num_workers=args.num_workers,
shuffle=True,
exclude_positive=False,
rank=i)
train_sampler_tail = train_data.create_sampler(args.batch_size,
args.neg_sample_size,
args.neg_sample_size,
mode='tail',
num_workers=args.num_workers,
shuffle=True,
exclude_positive=False,
rank=i)
train_samplers.append(NewBidirectionalOneShotIterator(train_sampler_head, train_sampler_tail,
args.neg_sample_size, args.neg_sample_size,
True, n_entities))
dataset = None
model = load_model(logger, args, n_entities, n_relations)
model.share_memory()
print('Total initialize time {:.3f} seconds'.format(time.time() - init_time_start))
rel_parts = train_data.rel_parts if args.strict_rel_part or args.soft_rel_part else None
cross_rels = train_data.cross_rels if args.soft_rel_part else None
procs = []
barrier = mp.Barrier(args.num_client)
for i in range(args.num_client):
proc = mp.Process(target=dist_train_test, args=(args,
model,
train_samplers[i],
entity_partition_book,
relation_partition_book,
local2global,
i,
rel_parts,
cross_rels,
barrier))
procs.append(proc)
proc.start()
for proc in procs:
proc.join()
if __name__ == '__main__':
args = ArgParser().parse_args()
logger = get_logger(args)
start_worker(args, logger)