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ndickson-nvidia edf2d52666 [Dist][Optim] Fixed race conditions in distributed SparseAdam and SparseAdagrad (#3971)
* * Fixed race condition bug in distributed/optim/pytorch/sparse_optim.py's SparseAdam::update, corresponding with the bug fixed in the non-distributed version in https://github.com/dmlc/dgl/pull/3013 , though using the newer Event-based approach from that corresponding function.  The race condition would often result in NaNs, like the previously fixed bug. https://github.com/dmlc/dgl/issues/2760

* * Fixed race condition bug in SparseAdagrad::update corresponding with the one fixed in SparseAdam::update in the previous commit.  Same info applies.

* * Fixed typo in all copies of a repeatedly-copied comment near bug fixed 3 commits ago, checking all implementations nearby for a corresponding bug.  (All of them appear to have been fixed as of 2 commits ago.)

* * Removed trailing whitespace

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
2022-05-09 09:05:31 -07:00

180 行
5.4 KiB
Python

# -*- coding: utf-8 -*-
#
# setup.py
#
# Copyright 2018 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
"""
KG Sparse embedding
"""
import os
import numpy as np
import mxnet as mx
from mxnet import gluon
from mxnet import ndarray as nd
from .score_fun import *
from .. import *
def logsigmoid(val):
max_elem = nd.maximum(0., -val)
z = nd.exp(-max_elem) + nd.exp(-val - max_elem)
return -(max_elem + nd.log(z))
get_device = lambda args : mx.gpu(args.gpu[0]) if args.gpu[0] >= 0 else mx.cpu()
norm = lambda x, p: nd.sum(nd.abs(x) ** p)
get_scalar = lambda x: x.detach().asscalar()
reshape = lambda arr, x, y: arr.reshape(x, y)
cuda = lambda arr, gpu: arr.as_in_context(mx.gpu(gpu))
class ExternalEmbedding:
"""Sparse Embedding for Knowledge Graph
It is used to store both entity embeddings and relation embeddings.
Parameters
----------
args :
Global configs.
num : int
Number of embeddings.
dim : int
Embedding dimention size.
ctx : mx.ctx
Device context to store the embedding.
"""
def __init__(self, args, num, dim, ctx):
self.gpu = args.gpu
self.args = args
self.trace = []
self.emb = nd.empty((num, dim), dtype=np.float32, ctx=ctx)
self.state_sum = nd.zeros((self.emb.shape[0]), dtype=np.float32, ctx=ctx)
self.state_step = 0
def init(self, emb_init):
"""Initializing the embeddings.
Parameters
----------
emb_init : float
The intial embedding range should be [-emb_init, emb_init].
"""
nd.random.uniform(-emb_init, emb_init,
shape=self.emb.shape, dtype=self.emb.dtype,
ctx=self.emb.context, out=self.emb)
def share_memory(self):
# TODO(zhengda) fix this later
pass
def __call__(self, idx, gpu_id=-1, trace=True):
""" Return sliced tensor.
Parameters
----------
idx : th.tensor
Slicing index
gpu_id : int
Which gpu to put sliced data in.
trace : bool
If True, trace the computation. This is required in training.
If False, do not trace the computation.
Default: True
"""
if self.emb.context != idx.context:
idx = idx.as_in_context(self.emb.context)
data = nd.take(self.emb, idx)
if gpu_id >= 0:
data = data.as_in_context(mx.gpu(gpu_id))
data.attach_grad()
if trace:
self.trace.append((idx, data))
return data
def update(self, gpu_id=-1):
""" Update embeddings in a sparse manner
Sparse embeddings are updated in mini batches. We maintain gradient states for
each embedding so they can be updated separately.
Parameters
----------
gpu_id : int
Which gpu to accelerate the calculation. if -1 is provided, cpu is used.
"""
self.state_step += 1
for idx, data in self.trace:
grad = data.grad
clr = self.args.lr
#clr = self.args.lr / (1 + (self.state_step - 1) * group['lr_decay'])
# the update is non-linear so indices must be unique
grad_indices = idx
grad_values = grad
grad_sum = (grad_values * grad_values).mean(1)
ctx = self.state_sum.context
if ctx != grad_indices.context:
grad_indices = grad_indices.as_in_context(ctx)
if ctx != grad_sum.context:
grad_sum = grad_sum.as_in_context(ctx)
self.state_sum[grad_indices] += grad_sum
std = self.state_sum[grad_indices] # _sparse_mask
if gpu_id >= 0:
std = std.as_in_context(mx.gpu(gpu_id))
std_values = nd.expand_dims(nd.sqrt(std) + 1e-10, 1)
tmp = (-clr * grad_values / std_values)
if tmp.context != ctx:
tmp = tmp.as_in_context(ctx)
# TODO(zhengda) the overhead is here.
self.emb[grad_indices] = mx.nd.take(self.emb, grad_indices) + tmp
self.trace = []
def curr_emb(self):
"""Return embeddings in trace.
"""
data = [data for _, data in self.trace]
return nd.concat(*data, dim=0)
def save(self, path, name):
"""Save embeddings.
Parameters
----------
path : str
Directory to save the embedding.
name : str
Embedding name.
"""
emb_fname = os.path.join(path, name+'.npy')
np.save(emb_fname, self.emb.asnumpy())
def load(self, path, name):
"""Load embeddings.
Parameters
----------
path : str
Directory to load the embedding.
name : str
Embedding name.
"""
emb_fname = os.path.join(path, name+'.npy')
self.emb = nd.array(np.load(emb_fname))