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文件
xiang song(charlie.song) f9d51fdf0b [Feature] Add a HINT for the per edge type sampler of heterogeneous DistGraph that highlighting the etypes are sorted already. (#3260)
* pass cpp test

* distgraph use sorted edge flag.

* lint

* triger

* update test

Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
2021-11-04 06:02:42 +00:00

761 行
31 KiB
Python

import dgl
import unittest
import os
from dgl.data import CitationGraphDataset
from dgl.data import WN18Dataset
from dgl.distributed import sample_neighbors, sample_etype_neighbors
from dgl.distributed import partition_graph, load_partition, load_partition_book
import sys
import multiprocessing as mp
import numpy as np
import backend as F
import time
from utils import get_local_usable_addr
from pathlib import Path
import pytest
from scipy import sparse as spsp
import random
from dgl.distributed import DistGraphServer, DistGraph
def start_server(rank, tmpdir, disable_shared_mem, graph_name, graph_format=['csc', 'coo']):
g = DistGraphServer(rank, "rpc_ip_config.txt", 1, 1,
tmpdir / (graph_name + '.json'), disable_shared_mem=disable_shared_mem,
graph_format=graph_format)
g.start()
def start_sample_client(rank, tmpdir, disable_shared_mem):
gpb = None
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_sampling.json', rank)
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_sampling", gpb=gpb)
try:
sampled_graph = sample_neighbors(dist_graph, [0, 10, 99, 66, 1024, 2008], 3)
except Exception as e:
print(e)
sampled_graph = None
dgl.distributed.exit_client()
return sampled_graph
def start_find_edges_client(rank, tmpdir, disable_shared_mem, eids, etype=None):
gpb = None
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_find_edges.json', rank)
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_find_edges", gpb=gpb)
try:
u, v = dist_graph.find_edges(eids, etype=etype)
except Exception as e:
print(e)
u, v = None, None
dgl.distributed.exit_client()
return u, v
def start_get_degrees_client(rank, tmpdir, disable_shared_mem, nids=None):
gpb = None
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_get_degrees.json', rank)
dgl.distributed.initialize("rpc_ip_config.txt", 1)
dist_graph = DistGraph("test_get_degrees", gpb=gpb)
try:
in_deg = dist_graph.in_degrees(nids)
all_in_deg = dist_graph.in_degrees()
out_deg = dist_graph.out_degrees(nids)
all_out_deg = dist_graph.out_degrees()
except Exception as e:
print(e)
in_deg, out_deg, all_in_deg, all_out_deg = None, None, None, None
dgl.distributed.exit_client()
return in_deg, out_deg, all_in_deg, all_out_deg
def check_rpc_sampling(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = CitationGraphDataset("cora")[0]
g.readonly()
print(g.idtype)
num_parts = num_server
num_hops = 1
partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=False)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
sampled_graph = start_sample_client(0, tmpdir, num_server > 1)
print("Done sampling")
for p in pserver_list:
p.join()
src, dst = sampled_graph.edges()
assert sampled_graph.number_of_nodes() == g.number_of_nodes()
assert np.all(F.asnumpy(g.has_edges_between(src, dst)))
eids = g.edge_ids(src, dst)
assert np.array_equal(
F.asnumpy(sampled_graph.edata[dgl.EID]), F.asnumpy(eids))
def check_rpc_find_edges_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = CitationGraphDataset("cora")[0]
g.readonly()
num_parts = num_server
orig_nid, orig_eid = partition_graph(g, 'test_find_edges', num_parts, tmpdir,
num_hops=1, part_method='metis',
reshuffle=True, return_mapping=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1,
'test_find_edges', ['csr', 'coo']))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
eids = F.tensor(np.random.randint(g.number_of_edges(), size=100))
u, v = g.find_edges(orig_eid[eids])
du, dv = start_find_edges_client(0, tmpdir, num_server > 1, eids)
du = orig_nid[du]
dv = orig_nid[dv]
assert F.array_equal(u, du)
assert F.array_equal(v, dv)
def create_random_hetero(dense=False, empty=False):
num_nodes = {'n1': 210, 'n2': 200, 'n3': 220} if dense else \
{'n1': 1010, 'n2': 1000, 'n3': 1020}
etypes = [('n1', 'r1', 'n2'),
('n1', 'r2', 'n3'),
('n2', 'r3', 'n3')]
edges = {}
random.seed(42)
for etype in etypes:
src_ntype, _, dst_ntype = etype
arr = spsp.random(num_nodes[src_ntype] - 10 if empty else num_nodes[src_ntype],
num_nodes[dst_ntype] - 10 if empty else num_nodes[dst_ntype],
density=0.1 if dense else 0.001,
format='coo', random_state=100)
edges[etype] = (arr.row, arr.col)
g = dgl.heterograph(edges, num_nodes)
g.nodes['n1'].data['feat'] = F.ones((g.number_of_nodes('n1'), 10), F.float32, F.cpu())
return g
def check_rpc_hetero_find_edges_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = create_random_hetero()
num_parts = num_server
orig_nid, orig_eid = partition_graph(g, 'test_find_edges', num_parts, tmpdir,
num_hops=1, part_method='metis',
reshuffle=True, return_mapping=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1,
'test_find_edges', ['csr', 'coo']))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
eids = F.tensor(np.random.randint(g.number_of_edges('r1'), size=100))
u, v = g.find_edges(orig_eid['r1'][eids], etype='r1')
du, dv = start_find_edges_client(0, tmpdir, num_server > 1, eids, etype='r1')
du = orig_nid['n1'][du]
dv = orig_nid['n2'][dv]
assert F.array_equal(u, du)
assert F.array_equal(v, dv)
# Wait non shared memory graph store
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
@unittest.skipIf(dgl.backend.backend_name == "mxnet", reason="Turn off Mxnet support")
@pytest.mark.parametrize("num_server", [1, 2])
def test_rpc_find_edges_shuffle(num_server):
import tempfile
os.environ['DGL_DIST_MODE'] = 'distributed'
with tempfile.TemporaryDirectory() as tmpdirname:
check_rpc_hetero_find_edges_shuffle(Path(tmpdirname), num_server)
check_rpc_find_edges_shuffle(Path(tmpdirname), num_server)
def check_rpc_get_degree_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = CitationGraphDataset("cora")[0]
g.readonly()
num_parts = num_server
partition_graph(g, 'test_get_degrees', num_parts, tmpdir,
num_hops=1, part_method='metis', reshuffle=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_get_degrees'))
p.start()
time.sleep(1)
pserver_list.append(p)
orig_nid = F.zeros((g.number_of_nodes(),), dtype=F.int64, ctx=F.cpu())
for i in range(num_server):
part, _, _, _, _, _, _ = load_partition(tmpdir / 'test_get_degrees.json', i)
orig_nid[part.ndata[dgl.NID]] = part.ndata['orig_id']
time.sleep(3)
nids = F.tensor(np.random.randint(g.number_of_nodes(), size=100))
in_degs, out_degs, all_in_degs, all_out_degs = start_get_degrees_client(0, tmpdir, num_server > 1, nids)
print("Done get_degree")
for p in pserver_list:
p.join()
print('check results')
assert F.array_equal(g.in_degrees(orig_nid[nids]), in_degs)
assert F.array_equal(g.in_degrees(orig_nid), all_in_degs)
assert F.array_equal(g.out_degrees(orig_nid[nids]), out_degs)
assert F.array_equal(g.out_degrees(orig_nid), all_out_degs)
# Wait non shared memory graph store
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
@unittest.skipIf(dgl.backend.backend_name == "mxnet", reason="Turn off Mxnet support")
@pytest.mark.parametrize("num_server", [1, 2])
def test_rpc_get_degree_shuffle(num_server):
import tempfile
os.environ['DGL_DIST_MODE'] = 'distributed'
with tempfile.TemporaryDirectory() as tmpdirname:
check_rpc_get_degree_shuffle(Path(tmpdirname), num_server)
#@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
#@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
@unittest.skip('Only support partition with shuffle')
def test_rpc_sampling():
import tempfile
os.environ['DGL_DIST_MODE'] = 'distributed'
with tempfile.TemporaryDirectory() as tmpdirname:
check_rpc_sampling(Path(tmpdirname), 2)
def check_rpc_sampling_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = CitationGraphDataset("cora")[0]
g.readonly()
num_parts = num_server
num_hops = 1
partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
sampled_graph = start_sample_client(0, tmpdir, num_server > 1)
print("Done sampling")
for p in pserver_list:
p.join()
orig_nid = F.zeros((g.number_of_nodes(),), dtype=F.int64, ctx=F.cpu())
orig_eid = F.zeros((g.number_of_edges(),), dtype=F.int64, ctx=F.cpu())
for i in range(num_server):
part, _, _, _, _, _, _ = load_partition(tmpdir / 'test_sampling.json', i)
orig_nid[part.ndata[dgl.NID]] = part.ndata['orig_id']
orig_eid[part.edata[dgl.EID]] = part.edata['orig_id']
src, dst = sampled_graph.edges()
src = orig_nid[src]
dst = orig_nid[dst]
assert sampled_graph.number_of_nodes() == g.number_of_nodes()
assert np.all(F.asnumpy(g.has_edges_between(src, dst)))
eids = g.edge_ids(src, dst)
eids1 = orig_eid[sampled_graph.edata[dgl.EID]]
assert np.array_equal(F.asnumpy(eids1), F.asnumpy(eids))
def start_hetero_sample_client(rank, tmpdir, disable_shared_mem, nodes):
gpb = None
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_sampling.json', rank)
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_sampling", gpb=gpb)
assert 'feat' in dist_graph.nodes['n1'].data
assert 'feat' not in dist_graph.nodes['n2'].data
assert 'feat' not in dist_graph.nodes['n3'].data
if gpb is None:
gpb = dist_graph.get_partition_book()
try:
sampled_graph = sample_neighbors(dist_graph, nodes, 3)
block = dgl.to_block(sampled_graph, nodes)
block.edata[dgl.EID] = sampled_graph.edata[dgl.EID]
except Exception as e:
print(e)
block = None
dgl.distributed.exit_client()
return block, gpb
def start_hetero_etype_sample_client(rank, tmpdir, disable_shared_mem, fanout=3,
nodes={'n3': [0, 10, 99, 66, 124, 208]}):
gpb = None
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_sampling.json', rank)
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_sampling", gpb=gpb)
assert 'feat' in dist_graph.nodes['n1'].data
assert 'feat' not in dist_graph.nodes['n2'].data
assert 'feat' not in dist_graph.nodes['n3'].data
if dist_graph.local_partition is not None:
# Check whether etypes are sorted in dist_graph
local_g = dist_graph.local_partition
local_nids = np.arange(local_g.num_nodes())
for lnid in local_nids:
leids = local_g.in_edges(lnid, form='eid')
letids = F.asnumpy(local_g.edata[dgl.ETYPE][leids])
_, idices = np.unique(letids, return_index=True)
assert np.all(idices[:-1] <= idices[1:])
if gpb is None:
gpb = dist_graph.get_partition_book()
try:
sampled_graph = sample_etype_neighbors(dist_graph, nodes, dgl.ETYPE, fanout)
block = dgl.to_block(sampled_graph, nodes)
block.edata[dgl.EID] = sampled_graph.edata[dgl.EID]
except Exception as e:
print(e)
block = None
dgl.distributed.exit_client()
return block, gpb
def check_rpc_hetero_sampling_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = create_random_hetero()
num_parts = num_server
num_hops = 1
partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
block, gpb = start_hetero_sample_client(0, tmpdir, num_server > 1,
nodes = {'n3': [0, 10, 99, 66, 124, 208]})
print("Done sampling")
for p in pserver_list:
p.join()
orig_nid_map = {ntype: F.zeros((g.number_of_nodes(ntype),), dtype=F.int64) for ntype in g.ntypes}
orig_eid_map = {etype: F.zeros((g.number_of_edges(etype),), dtype=F.int64) for etype in g.etypes}
for i in range(num_server):
part, _, _, _, _, _, _ = load_partition(tmpdir / 'test_sampling.json', i)
ntype_ids, type_nids = gpb.map_to_per_ntype(part.ndata[dgl.NID])
for ntype_id, ntype in enumerate(g.ntypes):
idx = ntype_ids == ntype_id
F.scatter_row_inplace(orig_nid_map[ntype], F.boolean_mask(type_nids, idx),
F.boolean_mask(part.ndata['orig_id'], idx))
etype_ids, type_eids = gpb.map_to_per_etype(part.edata[dgl.EID])
for etype_id, etype in enumerate(g.etypes):
idx = etype_ids == etype_id
F.scatter_row_inplace(orig_eid_map[etype], F.boolean_mask(type_eids, idx),
F.boolean_mask(part.edata['orig_id'], idx))
for src_type, etype, dst_type in block.canonical_etypes:
src, dst = block.edges(etype=etype)
# These are global Ids after shuffling.
shuffled_src = F.gather_row(block.srcnodes[src_type].data[dgl.NID], src)
shuffled_dst = F.gather_row(block.dstnodes[dst_type].data[dgl.NID], dst)
shuffled_eid = block.edges[etype].data[dgl.EID]
orig_src = F.asnumpy(F.gather_row(orig_nid_map[src_type], shuffled_src))
orig_dst = F.asnumpy(F.gather_row(orig_nid_map[dst_type], shuffled_dst))
orig_eid = F.asnumpy(F.gather_row(orig_eid_map[etype], shuffled_eid))
# Check the node Ids and edge Ids.
orig_src1, orig_dst1 = g.find_edges(orig_eid, etype=etype)
assert np.all(F.asnumpy(orig_src1) == orig_src)
assert np.all(F.asnumpy(orig_dst1) == orig_dst)
def get_degrees(g, nids, ntype):
deg = F.zeros((len(nids),), dtype=F.int64)
for srctype, etype, dsttype in g.canonical_etypes:
if srctype == ntype:
deg += g.out_degrees(u=nids, etype=etype)
elif dsttype == ntype:
deg += g.in_degrees(v=nids, etype=etype)
return deg
def check_rpc_hetero_sampling_empty_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = create_random_hetero(empty=True)
num_parts = num_server
num_hops = 1
orig_nids, _ = partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis',
reshuffle=True, return_mapping=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
deg = get_degrees(g, orig_nids['n3'], 'n3')
empty_nids = F.nonzero_1d(deg == 0)
block, gpb = start_hetero_sample_client(0, tmpdir, num_server > 1,
nodes = {'n3': empty_nids})
print("Done sampling")
for p in pserver_list:
p.join()
assert block.number_of_edges() == 0
assert len(block.etypes) == len(g.etypes)
def check_rpc_hetero_etype_sampling_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = create_random_hetero(dense=True)
num_parts = num_server
num_hops = 1
partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
fanout = 3
block, gpb = start_hetero_etype_sample_client(0, tmpdir, num_server > 1, fanout,
nodes={'n3': [0, 10, 99, 66, 124, 208]})
print("Done sampling")
for p in pserver_list:
p.join()
src, dst = block.edges(etype=('n1', 'r2', 'n3'))
assert len(src) == 18
src, dst = block.edges(etype=('n2', 'r3', 'n3'))
assert len(src) == 18
orig_nid_map = {ntype: F.zeros((g.number_of_nodes(ntype),), dtype=F.int64) for ntype in g.ntypes}
orig_eid_map = {etype: F.zeros((g.number_of_edges(etype),), dtype=F.int64) for etype in g.etypes}
for i in range(num_server):
part, _, _, _, _, _, _ = load_partition(tmpdir / 'test_sampling.json', i)
ntype_ids, type_nids = gpb.map_to_per_ntype(part.ndata[dgl.NID])
for ntype_id, ntype in enumerate(g.ntypes):
idx = ntype_ids == ntype_id
F.scatter_row_inplace(orig_nid_map[ntype], F.boolean_mask(type_nids, idx),
F.boolean_mask(part.ndata['orig_id'], idx))
etype_ids, type_eids = gpb.map_to_per_etype(part.edata[dgl.EID])
for etype_id, etype in enumerate(g.etypes):
idx = etype_ids == etype_id
F.scatter_row_inplace(orig_eid_map[etype], F.boolean_mask(type_eids, idx),
F.boolean_mask(part.edata['orig_id'], idx))
for src_type, etype, dst_type in block.canonical_etypes:
src, dst = block.edges(etype=etype)
# These are global Ids after shuffling.
shuffled_src = F.gather_row(block.srcnodes[src_type].data[dgl.NID], src)
shuffled_dst = F.gather_row(block.dstnodes[dst_type].data[dgl.NID], dst)
shuffled_eid = block.edges[etype].data[dgl.EID]
orig_src = F.asnumpy(F.gather_row(orig_nid_map[src_type], shuffled_src))
orig_dst = F.asnumpy(F.gather_row(orig_nid_map[dst_type], shuffled_dst))
orig_eid = F.asnumpy(F.gather_row(orig_eid_map[etype], shuffled_eid))
# Check the node Ids and edge Ids.
orig_src1, orig_dst1 = g.find_edges(orig_eid, etype=etype)
assert np.all(F.asnumpy(orig_src1) == orig_src)
assert np.all(F.asnumpy(orig_dst1) == orig_dst)
def check_rpc_hetero_etype_sampling_empty_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = create_random_hetero(dense=True, empty=True)
num_parts = num_server
num_hops = 1
orig_nids, _ = partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis',
reshuffle=True, return_mapping=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_sampling'))
p.start()
time.sleep(1)
pserver_list.append(p)
time.sleep(3)
fanout = 3
deg = get_degrees(g, orig_nids['n3'], 'n3')
empty_nids = F.nonzero_1d(deg == 0)
block, gpb = start_hetero_etype_sample_client(0, tmpdir, num_server > 1, fanout,
nodes={'n3': empty_nids})
print("Done sampling")
for p in pserver_list:
p.join()
assert block.number_of_edges() == 0
assert len(block.etypes) == len(g.etypes)
# Wait non shared memory graph store
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
@unittest.skipIf(dgl.backend.backend_name == "mxnet", reason="Turn off Mxnet support")
@pytest.mark.parametrize("num_server", [1, 2])
def test_rpc_sampling_shuffle(num_server):
import tempfile
os.environ['DGL_DIST_MODE'] = 'distributed'
with tempfile.TemporaryDirectory() as tmpdirname:
check_rpc_sampling_shuffle(Path(tmpdirname), num_server)
check_rpc_hetero_sampling_shuffle(Path(tmpdirname), num_server)
check_rpc_hetero_sampling_empty_shuffle(Path(tmpdirname), num_server)
check_rpc_hetero_etype_sampling_shuffle(Path(tmpdirname), num_server)
check_rpc_hetero_etype_sampling_empty_shuffle(Path(tmpdirname), num_server)
def check_standalone_sampling(tmpdir, reshuffle):
g = CitationGraphDataset("cora")[0]
num_parts = 1
num_hops = 1
partition_graph(g, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=reshuffle)
os.environ['DGL_DIST_MODE'] = 'standalone'
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_sampling", part_config=tmpdir / 'test_sampling.json')
sampled_graph = sample_neighbors(dist_graph, [0, 10, 99, 66, 1024, 2008], 3)
src, dst = sampled_graph.edges()
assert sampled_graph.number_of_nodes() == g.number_of_nodes()
assert np.all(F.asnumpy(g.has_edges_between(src, dst)))
eids = g.edge_ids(src, dst)
assert np.array_equal(
F.asnumpy(sampled_graph.edata[dgl.EID]), F.asnumpy(eids))
dgl.distributed.exit_client()
def check_standalone_etype_sampling(tmpdir, reshuffle):
hg = CitationGraphDataset('cora')[0]
num_parts = 1
num_hops = 1
partition_graph(hg, 'test_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=reshuffle)
os.environ['DGL_DIST_MODE'] = 'standalone'
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_sampling", part_config=tmpdir / 'test_sampling.json')
sampled_graph = sample_etype_neighbors(dist_graph, [0, 10, 99, 66, 1023], dgl.ETYPE, 3)
src, dst = sampled_graph.edges()
assert sampled_graph.number_of_nodes() == hg.number_of_nodes()
assert np.all(F.asnumpy(hg.has_edges_between(src, dst)))
eids = hg.edge_ids(src, dst)
assert np.array_equal(
F.asnumpy(sampled_graph.edata[dgl.EID]), F.asnumpy(eids))
dgl.distributed.exit_client()
def check_standalone_etype_sampling_heterograph(tmpdir, reshuffle):
hg = CitationGraphDataset('cora')[0]
num_parts = 1
num_hops = 1
src, dst = hg.edges()
new_hg = dgl.heterograph({('paper', 'cite', 'paper'): (src, dst),
('paper', 'cite-by', 'paper'): (dst, src)},
{'paper': hg.number_of_nodes()})
partition_graph(new_hg, 'test_hetero_sampling', num_parts, tmpdir,
num_hops=num_hops, part_method='metis', reshuffle=reshuffle)
os.environ['DGL_DIST_MODE'] = 'standalone'
dgl.distributed.initialize("rpc_ip_config.txt")
dist_graph = DistGraph("test_hetero_sampling", part_config=tmpdir / 'test_hetero_sampling.json')
sampled_graph = sample_etype_neighbors(dist_graph, [0, 1, 2, 10, 99, 66, 1023, 1024, 2700, 2701], dgl.ETYPE, 1)
src, dst = sampled_graph.edges(etype=('paper', 'cite', 'paper'))
assert len(src) == 10
src, dst = sampled_graph.edges(etype=('paper', 'cite-by', 'paper'))
assert len(src) == 10
assert sampled_graph.number_of_nodes() == new_hg.number_of_nodes()
dgl.distributed.exit_client()
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
def test_standalone_sampling():
import tempfile
os.environ['DGL_DIST_MODE'] = 'standalone'
with tempfile.TemporaryDirectory() as tmpdirname:
check_standalone_sampling(Path(tmpdirname), False)
check_standalone_sampling(Path(tmpdirname), True)
def start_in_subgraph_client(rank, tmpdir, disable_shared_mem, nodes):
gpb = None
dgl.distributed.initialize("rpc_ip_config.txt")
if disable_shared_mem:
_, _, _, gpb, _, _, _ = load_partition(tmpdir / 'test_in_subgraph.json', rank)
dist_graph = DistGraph("test_in_subgraph", gpb=gpb)
try:
sampled_graph = dgl.distributed.in_subgraph(dist_graph, nodes)
except Exception as e:
print(e)
sampled_graph = None
dgl.distributed.exit_client()
return sampled_graph
def check_rpc_in_subgraph_shuffle(tmpdir, num_server):
ip_config = open("rpc_ip_config.txt", "w")
for _ in range(num_server):
ip_config.write('{}\n'.format(get_local_usable_addr()))
ip_config.close()
g = CitationGraphDataset("cora")[0]
g.readonly()
num_parts = num_server
partition_graph(g, 'test_in_subgraph', num_parts, tmpdir,
num_hops=1, part_method='metis', reshuffle=True)
pserver_list = []
ctx = mp.get_context('spawn')
for i in range(num_server):
p = ctx.Process(target=start_server, args=(i, tmpdir, num_server > 1, 'test_in_subgraph'))
p.start()
time.sleep(1)
pserver_list.append(p)
nodes = [0, 10, 99, 66, 1024, 2008]
time.sleep(3)
sampled_graph = start_in_subgraph_client(0, tmpdir, num_server > 1, nodes)
for p in pserver_list:
p.join()
orig_nid = F.zeros((g.number_of_nodes(),), dtype=F.int64, ctx=F.cpu())
orig_eid = F.zeros((g.number_of_edges(),), dtype=F.int64, ctx=F.cpu())
for i in range(num_server):
part, _, _, _, _, _, _ = load_partition(tmpdir / 'test_in_subgraph.json', i)
orig_nid[part.ndata[dgl.NID]] = part.ndata['orig_id']
orig_eid[part.edata[dgl.EID]] = part.edata['orig_id']
src, dst = sampled_graph.edges()
src = orig_nid[src]
dst = orig_nid[dst]
assert sampled_graph.number_of_nodes() == g.number_of_nodes()
assert np.all(F.asnumpy(g.has_edges_between(src, dst)))
subg1 = dgl.in_subgraph(g, orig_nid[nodes])
src1, dst1 = subg1.edges()
assert np.all(np.sort(F.asnumpy(src)) == np.sort(F.asnumpy(src1)))
assert np.all(np.sort(F.asnumpy(dst)) == np.sort(F.asnumpy(dst1)))
eids = g.edge_ids(src, dst)
eids1 = orig_eid[sampled_graph.edata[dgl.EID]]
assert np.array_equal(F.asnumpy(eids1), F.asnumpy(eids))
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
def test_rpc_in_subgraph():
import tempfile
os.environ['DGL_DIST_MODE'] = 'distributed'
with tempfile.TemporaryDirectory() as tmpdirname:
check_rpc_in_subgraph_shuffle(Path(tmpdirname), 2)
@unittest.skipIf(os.name == 'nt', reason='Do not support windows yet')
@unittest.skipIf(dgl.backend.backend_name == 'tensorflow', reason='Not support tensorflow for now')
@unittest.skipIf(dgl.backend.backend_name == "mxnet", reason="Turn off Mxnet support")
def test_standalone_etype_sampling():
import tempfile
with tempfile.TemporaryDirectory() as tmpdirname:
os.environ['DGL_DIST_MODE'] = 'standalone'
check_standalone_etype_sampling_heterograph(Path(tmpdirname), True)
with tempfile.TemporaryDirectory() as tmpdirname:
os.environ['DGL_DIST_MODE'] = 'standalone'
check_standalone_etype_sampling(Path(tmpdirname), True)
check_standalone_etype_sampling(Path(tmpdirname), False)
if __name__ == "__main__":
import tempfile
with tempfile.TemporaryDirectory() as tmpdirname:
os.environ['DGL_DIST_MODE'] = 'standalone'
check_standalone_etype_sampling_heterograph(Path(tmpdirname), True)
with tempfile.TemporaryDirectory() as tmpdirname:
os.environ['DGL_DIST_MODE'] = 'standalone'
check_standalone_etype_sampling(Path(tmpdirname), True)
check_standalone_etype_sampling(Path(tmpdirname), False)
check_standalone_sampling(Path(tmpdirname), True)
check_standalone_sampling(Path(tmpdirname), False)
os.environ['DGL_DIST_MODE'] = 'distributed'
check_rpc_sampling(Path(tmpdirname), 2)
check_rpc_sampling(Path(tmpdirname), 1)
check_rpc_get_degree_shuffle(Path(tmpdirname), 1)
check_rpc_get_degree_shuffle(Path(tmpdirname), 2)
check_rpc_find_edges_shuffle(Path(tmpdirname), 2)
check_rpc_find_edges_shuffle(Path(tmpdirname), 1)
check_rpc_hetero_find_edges_shuffle(Path(tmpdirname), 1)
check_rpc_hetero_find_edges_shuffle(Path(tmpdirname), 2)
check_rpc_in_subgraph_shuffle(Path(tmpdirname), 2)
check_rpc_sampling_shuffle(Path(tmpdirname), 1)
check_rpc_sampling_shuffle(Path(tmpdirname), 2)
check_rpc_hetero_sampling_shuffle(Path(tmpdirname), 1)
check_rpc_hetero_sampling_shuffle(Path(tmpdirname), 2)
check_rpc_hetero_sampling_empty_shuffle(Path(tmpdirname), 1)
check_rpc_hetero_etype_sampling_shuffle(Path(tmpdirname), 1)
check_rpc_hetero_etype_sampling_shuffle(Path(tmpdirname), 2)
check_rpc_hetero_etype_sampling_empty_shuffle(Path(tmpdirname), 1)