dmlc--dgl
546 行
20 KiB
Python
546 行
20 KiB
Python
import torch as th
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from distutils.version import LooseVersion
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from ...base import is_all, ALL
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from ...sparse import _gspmm, _gspmm_hetero, _gsddmm, _gsddmm_hetero, _segment_reduce, _bwd_segment_cmp, _scatter_add
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from ...sparse import _csrmm, _csrsum, _csrmask
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from ...heterograph_index import create_unitgraph_from_csr
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if LooseVersion(th.__version__) >= LooseVersion("1.6.0"):
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from torch.cuda.amp import custom_fwd, custom_bwd
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else:
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import functools
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"""PyTorch natively supports automatic mixed precision in DGL 1.6, we redefine
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the custom_fwd and custom_bwd function to be compatible with DGL 1.5.
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"""
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def custom_fwd(**kwargs):
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def custom_fwd_inner(fwd):
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@functools.wraps(fwd)
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def decorate_fwd(*args, **kwargs):
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return fwd(*args, **kwargs)
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return decorate_fwd
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return custom_fwd_inner
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def custom_bwd(bwd):
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@functools.wraps(bwd)
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def decorate_bwd(*args, **kwargs):
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return bwd(*args, **kwargs)
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return decorate_bwd
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__all__ = ['gspmm', 'gsddmm', 'gspmm_hetero', 'gsddmm_hetero', 'edge_softmax', 'segment_reduce', 'scatter_add',
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'csrmm', 'csrsum', 'csrmask']
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def _reduce_grad(grad, shape):
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"""Reduce gradient on the broadcast dimension
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If there is broadcast in forward pass, gradients need to be reduced on
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broadcast dimension. This function checks the input tensor shape and
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gradient shape and perform the reduction.
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Parameters
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----------
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grad: Tensor
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Gradient tensor
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shape: tuple
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Shape of input tensor
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Returns
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-------
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Tensor
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"""
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grad_shape = grad.shape[1:]
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in_shape = shape[1:]
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if in_shape == grad_shape:
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# no need to reduce
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return grad
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num_to_squeeze = len(grad_shape) - len(in_shape)
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# pad inshape
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in_shape = (1,) * num_to_squeeze + in_shape
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reduce_idx = th.nonzero(th.tensor(grad_shape) - th.tensor(in_shape), as_tuple=False)
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reduce_idx += 1 # skip batch dim
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if len(reduce_idx) > 0:
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grad = grad.sum(dim=tuple(reduce_idx), keepdim=True)
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return grad.view(-1, *shape[1:])
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def _need_reduce_last_dim(ufeat, efeat):
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"""Indicates whether to reduce the last dimension on edges
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in the backward pass of spmm,
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if so, use dot instead of mul."""
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if ufeat is None or efeat is None:
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return False
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ushp = ufeat.shape
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eshp = efeat.shape
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return ushp[1:-1] == eshp[1:-1] and eshp[-1] == 1 and ushp[-1] > 1
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def _expand(x, shape):
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return x.expand(-1, *shape)
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def spmm_cache_X(binary_op, reduce_op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache X in SpMM forward stage."""
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if binary_op != 'copy_lhs' and req_grad_Y:
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if reduce_op == 'sum':
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return True
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else:
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if binary_op == 'mul':
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return True
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return False
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def spmm_cache_Y(binary_op, reduce_op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache Y in SpMM forward stage."""
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if binary_op != 'copy_rhs' and req_grad_X:
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if reduce_op == 'sum':
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if binary_op in ['mul', 'add']:
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return True
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else:
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if binary_op == 'mul':
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return True
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return False
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def spmm_cache_argX(binary_op, reduce_op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache argX in SpMM forward stage."""
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if req_grad_X or req_grad_Y:
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if reduce_op in ['min', 'max']:
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return True
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return False
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def spmm_cache_argY(binary_op, reduce_op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache argY in SpMM forward stage."""
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if req_grad_X or req_grad_Y:
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if reduce_op in ['min', 'max']:
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return True
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return False
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class GSpMM(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, gidx, op, reduce_op, X, Y):
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out, (argX, argY) = _gspmm(gidx, op, reduce_op, X, Y)
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reduce_last = _need_reduce_last_dim(X, Y)
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X_shape = X.shape if X is not None else None
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Y_shape = Y.shape if Y is not None else None
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dtype = X.dtype if X is not None else Y.dtype
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device = X.device if X is not None else Y.device
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ctx.backward_cache = gidx, op, reduce_op, X_shape, Y_shape, dtype, device, reduce_last
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req_grad_X = X.requires_grad if X is not None else False
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req_grad_Y = Y.requires_grad if Y is not None else False
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if not spmm_cache_X(op, reduce_op, req_grad_X, req_grad_Y):
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X = None
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if not spmm_cache_Y(op, reduce_op, req_grad_X, req_grad_Y):
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Y = None
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if not spmm_cache_argX(op, reduce_op, req_grad_X, req_grad_Y):
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argX = None
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if not spmm_cache_argY(op, reduce_op, req_grad_X, req_grad_Y):
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argY = None
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ctx.save_for_backward(X, Y, argX, argY)
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return out
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@staticmethod
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@custom_bwd
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def backward(ctx, dZ):
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gidx, op, reduce_op, X_shape, Y_shape, dtype, device, reduce_last = ctx.backward_cache
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ctx.backward_cache = None
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X, Y, argX, argY = ctx.saved_tensors
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if op != 'copy_rhs' and ctx.needs_input_grad[3]:
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g_rev = gidx.reverse()
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if reduce_op == 'sum':
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if op == 'mul':
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dX = gspmm(g_rev, 'mul', 'sum', dZ, Y)
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elif op == 'add':
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dX = gspmm(g_rev, 'copy_lhs', 'sum', dZ, Y)
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elif op == 'copy_lhs':
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dX = gspmm(g_rev, 'copy_lhs', 'sum', dZ, None)
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else: # max/min
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dX = th.zeros((X_shape[0],) + dZ.shape[1:],
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dtype=dtype, device=device)
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if op == 'mul':
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grad = _expand(Y, dZ.shape[1:]).gather(
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0, argY.long()) * dZ
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dX.scatter_add_(0, argX.long(), grad)
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elif op in ['add', 'copy_lhs']:
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dX.scatter_add_(0, argX.long(), dZ)
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dX = _reduce_grad(dX, X_shape)
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else: # X has not gradient
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dX = None
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if op != 'copy_lhs' and ctx.needs_input_grad[4]:
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if reduce_op == 'sum':
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if op == 'mul' and reduce_last:
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dY = gsddmm(gidx, 'dot', X, dZ)
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elif op == 'mul':
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dY = gsddmm(gidx, 'mul', X, dZ)
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elif op in ['add', 'copy_rhs']:
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dY = gsddmm(gidx, 'copy_rhs', X, dZ)
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else: # max/min
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dY = th.zeros((Y_shape[0],) + dZ.shape[1:],
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dtype=dtype, device=device)
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if op == 'mul':
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grad = _expand(X, dZ.shape[1:]).gather(
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0, argX.long()) * dZ
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dY.scatter_add_(0, argY.long(), grad)
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elif op in ['add', 'copy_rhs']:
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dY.scatter_add_(0, argY.long(), dZ)
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dY = _reduce_grad(dY, Y_shape)
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else: # Y has no gradient
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dY = None
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return None, None, None, dX, dY
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class GSpMM_hetero(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, g, op, reduce_op, *feats): # feats = lhs_data + rhs_data
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out, (argX, argY) = _gspmm_hetero(g, op, reduce_op, feats)
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ctx.backward_cache = g, op, reduce_op
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ctx.save_for_backward(*feats, argX, argY)
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return out
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@staticmethod
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@custom_bwd
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def backward(ctx, *dZ):
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g, op, reduce_op = ctx.backward_cache
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ctx.backward_cache = None
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feats = ctx.saved_tensors[:-2]
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argX = ctx.saved_tensors[-2]
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argY = ctx.saved_tensors[-1]
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num_ntypes = g._graph.number_of_ntypes()
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X, Y = feats[:num_ntypes], feats[num_ntypes:]
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if op != 'copy_rhs' and any([x is not None for x in X]):
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g_rev = g.reverse()
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# TODO(Israt): implement other combinations of message and reduce functions
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if reduce_op == 'sum':
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if op == 'copy_lhs':
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dX = gspmm_hetero(g_rev, 'copy_lhs', 'sum', *dZ)
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dX = tuple([_reduce_grad(dX[i], X[i].shape) if X[i] is not None else None
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for i in range(len(X))])
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else: # X has not gradient
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dX = tuple([None] * len(X))
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if op != 'copy_lhs' and any([y is not None for y in Y]):
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# TODO(Israt): implement other combinations of message and reduce functions
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if reduce_op == 'sum':
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if op in ['copy_rhs']:
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tmp_Z = tuple([dZ[i] if dZ[i] is not None else None
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for i in range(len(dZ))])
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tmp = tuple(X + tmp_Z)
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dY = gsddmm_hetero(g, 'copy_rhs', 'u', 'v', *tmp)
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dY = tuple([_reduce_grad(dY[i], Y[i].shape) if Y[i] is not None else None
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for i in range(len(Y))])
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else: # Y has no gradient
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dY = tuple([None] * len(Y))
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return (None, None, None) + dX + dY
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def sddmm_cache_X(op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache X in SDDMM forward stage."""
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if op in ['mul', 'dot'] and req_grad_Y:
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return True
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return False
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def sddmm_cache_Y(op, req_grad_X, req_grad_Y):
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"""Rules to identify whether to cache Y in SDDMM forward stage."""
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if op in ['mul', 'dot'] and req_grad_X:
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return True
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return False
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class GSDDMM(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, gidx, op, X, Y, lhs_target, rhs_target):
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out = _gsddmm(gidx, op, X, Y, lhs_target, rhs_target)
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X_shape = X.shape if X is not None else None
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Y_shape = Y.shape if Y is not None else None
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ctx.backward_cache = gidx, op, lhs_target, rhs_target, X_shape, Y_shape
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req_grad_X = X.requires_grad if X is not None else False
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req_grad_Y = Y.requires_grad if Y is not None else False
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if not sddmm_cache_X(op, req_grad_X, req_grad_Y):
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X = None
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if not sddmm_cache_Y(op, req_grad_X, req_grad_Y):
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Y = None
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ctx.save_for_backward(X, Y)
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return out
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@staticmethod
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@custom_bwd
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def backward(ctx, dZ):
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gidx, op, lhs_target, rhs_target, X_shape, Y_shape = ctx.backward_cache
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ctx.backward_cache = None
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X, Y = ctx.saved_tensors
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if op != 'copy_rhs' and ctx.needs_input_grad[2]:
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if lhs_target in ['u', 'v']:
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_gidx = gidx if lhs_target == 'v' else gidx.reverse()
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if op in ['add', 'copy_lhs']:
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dX = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ)
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else: # mul, dot
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if rhs_target == lhs_target:
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dX = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ) * Y
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elif rhs_target == 'e':
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dX = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ * Y)
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else: # rhs_target = !lhs_target
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dX = gspmm(_gidx, 'mul', 'sum', Y, dZ)
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else: # lhs_target == 'e'
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if op in ['add', 'copy_lhs']:
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dX = dZ
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else: # mul, dot
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dX = gsddmm(gidx, 'mul', dZ, Y, 'e', rhs_target)
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dX = _reduce_grad(dX, X_shape)
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else:
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dX = None
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if op != 'copy_lhs' and ctx.needs_input_grad[3]:
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if rhs_target in ['u', 'v']:
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_gidx = gidx if rhs_target == 'v' else gidx.reverse()
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if op in ['add', 'copy_rhs']:
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dY = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ)
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else: # mul, dot
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if lhs_target == rhs_target:
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dY = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ) * X
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elif lhs_target == 'e':
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dY = gspmm(_gidx, 'copy_rhs', 'sum', None, dZ * X)
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else: # rhs_target = !lhs_target
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dY = gspmm(_gidx, 'mul', 'sum', X, dZ)
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else:
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if op in ['add', 'copy_rhs']:
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dY = dZ
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else: # mul, dot
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dY = gsddmm(gidx, 'mul', dZ, X, 'e', lhs_target)
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dY = _reduce_grad(dY, Y_shape)
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else:
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dY = None
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return None, None, dX, dY, None, None
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class GSDDMM_hetero(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, g, op, lhs_target, rhs_target, *feats): # feats = X+Y
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out = _gsddmm_hetero(g, op, lhs_target, rhs_target, feats)
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ctx.backward_cache = g, op, lhs_target, rhs_target
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ctx.save_for_backward(*feats)
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return out
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@staticmethod
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@custom_bwd
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# TODO(Israt): Implement the backward operator
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def backward(ctx, *dZ):
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raise NotImplementedError('Homogenized GSDDMM backward operation is not implemented.')
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class EdgeSoftmax(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, gidx, score, eids, norm_by):
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"""Forward function.
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Pseudo-code:
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.. code:: python
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score = dgl.EData(g, score)
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score_max = score.dst_max() # of type dgl.NData
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score = score - score_max # edge_sub_dst, ret dgl.EData
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score_sum = score.dst_sum() # of type dgl.NData
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out = score / score_sum # edge_div_dst, ret dgl.EData
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return out.data
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"""
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# remember to save the graph to backward cache before making it
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# a local variable
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if not is_all(eids):
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gidx = gidx.edge_subgraph([eids], True).graph
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if norm_by == 'src':
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gidx = gidx.reverse()
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score_max = _gspmm(gidx, 'copy_rhs', 'max', None, score)[0]
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score = th.exp(_gsddmm(gidx, 'sub', score, score_max, 'e', 'v'))
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score_sum = _gspmm(gidx, 'copy_rhs', 'sum', None, score)[0]
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out = _gsddmm(gidx, 'div', score, score_sum, 'e', 'v')
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ctx.backward_cache = gidx
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ctx.save_for_backward(out)
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return out
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@staticmethod
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@custom_bwd
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def backward(ctx, grad_out):
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"""Backward function.
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Pseudo-code:
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.. code:: python
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g, out = ctx.backward_cache
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grad_out = dgl.EData(g, grad_out)
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out = dgl.EData(g, out)
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sds = out * grad_out # type dgl.EData
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sds_sum = sds.dst_sum() # type dgl.NData
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grad_score = sds - out * sds_sum # multiple expressions
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return grad_score.data
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"""
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gidx = ctx.backward_cache
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# See https://github.com/dmlc/dgl/pull/3386
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ctx.backward_cache = None
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out, = ctx.saved_tensors
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sds = out * grad_out
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accum = gspmm(gidx, 'copy_rhs', 'sum', None, sds)
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grad_score = sds - gsddmm(gidx, 'mul', out, accum, 'e', 'v')
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return None, grad_score, None, None
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class SegmentReduce(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, op, x, offsets):
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y, arg = _segment_reduce(op, x, offsets)
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ctx.save_for_backward(arg, offsets)
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ctx.backward_cache = op
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return y
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@staticmethod
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@custom_bwd
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def backward(ctx, dy):
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op = ctx.backward_cache
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# See https://github.com/dmlc/dgl/pull/3386
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ctx.backward_cache = None
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arg, offsets = ctx.saved_tensors
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m = offsets[-1].item()
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if op == 'sum':
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offsets = offsets[1:]
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# To address the issue of trailing zeros, related issue:
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# https://github.com/dmlc/dgl/pull/2610
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indices = th.zeros(
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(m + 1,), device=offsets.device, dtype=offsets.dtype)
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indices.scatter_add_(0, offsets, th.ones_like(offsets))
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indices = th.cumsum(indices, -1)[:-1]
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dx = dy[indices]
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else:
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dx = _bwd_segment_cmp(dy, arg, m)
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return None, dx, None
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class ScatterAdd(th.autograd.Function):
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@staticmethod
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@custom_fwd(cast_inputs=th.float16)
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def forward(ctx, x, idx, m):
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y = _scatter_add(x, idx, m)
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ctx.save_for_backward(idx)
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return y
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@staticmethod
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@custom_bwd
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def backward(ctx, dy):
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idx = ctx.saved_tensors
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return dy[idx], None, None
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class CSRMM(th.autograd.Function):
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@staticmethod
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def forward(ctx, gidxA, A_weights, gidxB, B_weights, num_vtypes):
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gidxC, C_weights = _csrmm(gidxA, A_weights, gidxB, B_weights, num_vtypes)
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nrows, ncols, C_indptr, C_indices, C_eids = gidxC.adjacency_matrix_tensors(0, False, 'csr')
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# Note: the returned C_indptr, C_indices and C_eids tensors MUST be the same
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# as the underlying tensors of the created graph gidxC.
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ctx.backward_cache = gidxA, gidxB, gidxC
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ctx.save_for_backward(A_weights, B_weights)
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return th.tensor(nrows), th.tensor(ncols), C_indptr, C_indices, C_eids, C_weights
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@staticmethod
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def backward(ctx, dnrows, dncols, dC_indptr, dC_indices, dC_eids, dC_weights):
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# Only the last argument is meaningful.
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gidxA, gidxB, gidxC = ctx.backward_cache
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ctx.backward_cache = None
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A_weights, B_weights = ctx.saved_tensors
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dgidxA, dA_weights = csrmm(
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gidxC, dC_weights, gidxB.reverse(), B_weights, gidxA.number_of_ntypes())
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dgidxB, dB_weights = csrmm(
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gidxA.reverse(), A_weights, gidxC, dC_weights, gidxB.number_of_ntypes())
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dA_weights = csrmask(dgidxA, dA_weights, gidxA)
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dB_weights = csrmask(dgidxB, dB_weights, gidxB)
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return None, dA_weights, None, dB_weights, None
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class CSRSum(th.autograd.Function):
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@staticmethod
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def forward(ctx, gidxs, *weights):
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# PyTorch tensors must be explicit arguments of the forward function
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gidxC, C_weights = _csrsum(gidxs, weights)
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nrows, ncols, C_indptr, C_indices, C_eids = gidxC.adjacency_matrix_tensors(
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0, False, 'csr')
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# Note: the returned C_indptr, C_indices and C_eids tensors MUST be the same
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# as the underlying tensors of the created graph gidxC.
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ctx.backward_cache = gidxs, gidxC
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return th.tensor(nrows), th.tensor(ncols), C_indptr, C_indices, C_eids, C_weights
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@staticmethod
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def backward(ctx, dnrows, dncols, dC_indptr, dC_indices, dC_eids, dC_weights):
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# Only the last argument is meaningful.
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gidxs, gidxC = ctx.backward_cache
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ctx.backward_cache = None
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return (None,) + tuple(csrmask(gidxC, dC_weights, gidx) for gidx in gidxs)
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class CSRMask(th.autograd.Function):
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@staticmethod
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def forward(ctx, gidxA, A_weights, gidxB):
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ctx.backward_cache = gidxA, gidxB
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return _csrmask(gidxA, A_weights, gidxB)
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@staticmethod
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def backward(ctx, dB_weights):
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gidxA, gidxB = ctx.backward_cache
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ctx.backward_cache = None
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return None, csrmask(gidxB, dB_weights, gidxA), None
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def gspmm(gidx, op, reduce_op, lhs_data, rhs_data):
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if op == 'sub':
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op = 'add'
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rhs_data = -rhs_data
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if op == 'div':
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op = 'mul'
|
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rhs_data = 1. / rhs_data
|
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return GSpMM.apply(gidx, op, reduce_op, lhs_data, rhs_data)
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|
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def gsddmm(gidx, op, lhs_data, rhs_data, lhs_target='u', rhs_target='v'):
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if op == 'sub':
|
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op = 'add'
|
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rhs_data = -rhs_data
|
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if op == 'div':
|
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op = 'mul'
|
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rhs_data = 1. / rhs_data
|
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return GSDDMM.apply(gidx, op, lhs_data, rhs_data, lhs_target, rhs_target)
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|
|
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def gspmm_hetero(g, op, reduce_op, *lhs_and_rhs_tuple):
|
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return GSpMM_hetero.apply(g, op, reduce_op, *lhs_and_rhs_tuple)
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|
|
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def gsddmm_hetero(g, op, lhs_target='u', rhs_target='v', *lhs_and_rhs_tuple):
|
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return GSDDMM_hetero.apply(g, op, lhs_target, rhs_target, *lhs_and_rhs_tuple)
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|
|
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def edge_softmax(gidx, logits, eids=ALL, norm_by='dst'):
|
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return EdgeSoftmax.apply(gidx, logits, eids, norm_by)
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|
|
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def segment_reduce(op, x, offsets):
|
|
return SegmentReduce.apply(op, x, offsets)
|
|
|
|
def scatter_add(x, idx, m):
|
|
return ScatterAdd.apply(x, idx, m)
|
|
|
|
def csrmm(gidxA, A_weights, gidxB, B_weights, num_vtypes):
|
|
nrows, ncols, C_indptr, C_indices, C_eids, C_weights = \
|
|
CSRMM.apply(gidxA, A_weights, gidxB, B_weights, num_vtypes)
|
|
gidxC = create_unitgraph_from_csr(
|
|
num_vtypes, nrows.item(), ncols.item(), C_indptr, C_indices, C_eids,
|
|
["coo", "csr", "csc"])
|
|
return gidxC, C_weights
|
|
|
|
def csrsum(gidxs, weights):
|
|
nrows, ncols, C_indptr, C_indices, C_eids, C_weights = CSRSum.apply(gidxs, *weights)
|
|
gidxC = create_unitgraph_from_csr(
|
|
gidxs[0].number_of_ntypes(), nrows.item(), ncols.item(), C_indptr, C_indices, C_eids,
|
|
["coo", "csr", "csc"])
|
|
return gidxC, C_weights
|
|
|
|
def csrmask(gidxA, A_weights, gidxB):
|
|
return CSRMask.apply(gidxA, A_weights, gidxB)
|