dmlc--dgl
453d358d2c
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
223 行
6.6 KiB
Python
223 行
6.6 KiB
Python
"""Torch NodeEmbedding."""
|
|
from datetime import timedelta
|
|
import torch as th
|
|
from ...backend import pytorch as F
|
|
from ...utils import get_shared_mem_array, create_shared_mem_array
|
|
|
|
_STORE = None
|
|
|
|
class NodeEmbedding: # NodeEmbedding
|
|
'''Class for storing node embeddings.
|
|
|
|
The class is optimized for training large-scale node embeddings. It updates the embedding in
|
|
a sparse way and can scale to graphs with millions of nodes. It also supports partitioning
|
|
to multiple GPUs (on a single machine) for more acceleration. It does not support partitioning
|
|
across machines.
|
|
|
|
Currently, DGL provides two optimizers that work with this NodeEmbedding
|
|
class: ``SparseAdagrad`` and ``SparseAdam``.
|
|
|
|
The implementation is based on torch.distributed package. It depends on the pytorch
|
|
default distributed process group to collect multi-process information and uses
|
|
``torch.distributed.TCPStore`` to share meta-data information across multiple gpu processes.
|
|
It use the local address of '127.0.0.1:12346' to initialize the TCPStore.
|
|
|
|
NOTE: The support of NodeEmbedding is experimental.
|
|
|
|
Parameters
|
|
----------
|
|
num_embeddings : int
|
|
The number of embeddings. Currently, the number of embeddings has to be the same as
|
|
the number of nodes.
|
|
embedding_dim : int
|
|
The dimension size of embeddings.
|
|
name : str
|
|
The name of the embeddings. The name should uniquely identify the embeddings in the system.
|
|
init_func : callable, optional
|
|
The function to create the initial data. If the init function is not provided,
|
|
the values of the embeddings are initialized to zero.
|
|
|
|
Examples
|
|
--------
|
|
Before launching multiple gpu processes
|
|
|
|
>>> def initializer(emb):
|
|
th.nn.init.xavier_uniform_(emb)
|
|
return emb
|
|
|
|
In each training process
|
|
|
|
>>> emb = dgl.nn.NodeEmbedding(g.number_of_nodes(), 10, 'emb', init_func=initializer)
|
|
>>> optimizer = dgl.optim.SparseAdam([emb], lr=0.001)
|
|
>>> for blocks in dataloader:
|
|
... ...
|
|
... feats = emb(nids, gpu_0)
|
|
... loss = F.sum(feats + 1, 0)
|
|
... loss.backward()
|
|
... optimizer.step()
|
|
'''
|
|
|
|
def __init__(self, num_embeddings, embedding_dim, name,
|
|
init_func=None):
|
|
global _STORE
|
|
|
|
# Check whether it is multi-gpu training or not.
|
|
if th.distributed.is_initialized():
|
|
rank = th.distributed.get_rank()
|
|
world_size = th.distributed.get_world_size()
|
|
else:
|
|
rank = -1
|
|
world_size = 0
|
|
self._rank = rank
|
|
self._world_size = world_size
|
|
host_name = '127.0.0.1'
|
|
port = 12346
|
|
|
|
if rank <= 0:
|
|
emb = create_shared_mem_array(name, (num_embeddings, embedding_dim), th.float32)
|
|
if init_func is not None:
|
|
emb = init_func(emb)
|
|
if rank == 0: # the master gpu process
|
|
# for multi-gpu training, setup a TCPStore for
|
|
# embeding status synchronization across GPU processes
|
|
if _STORE is None:
|
|
_STORE = th.distributed.TCPStore(
|
|
host_name, port, world_size, True, timedelta(seconds=30))
|
|
for _ in range(1, world_size):
|
|
# send embs
|
|
_STORE.set(name, name)
|
|
elif rank > 0:
|
|
# receive
|
|
if _STORE is None:
|
|
_STORE = th.distributed.TCPStore(
|
|
host_name, port, world_size, False, timedelta(seconds=30))
|
|
_STORE.wait([name])
|
|
emb = get_shared_mem_array(name, (num_embeddings, embedding_dim), th.float32)
|
|
|
|
self._store = _STORE
|
|
self._tensor = emb
|
|
self._num_embeddings = num_embeddings
|
|
self._embedding_dim = embedding_dim
|
|
self._name = name
|
|
self._optm_state = None # track optimizer state
|
|
self._trace = [] # track minibatch
|
|
|
|
def __call__(self, node_ids, device=th.device('cpu')):
|
|
"""
|
|
node_ids : th.tensor
|
|
Index of the embeddings to collect.
|
|
device : th.device
|
|
Target device to put the collected embeddings.
|
|
"""
|
|
emb = self._tensor[node_ids].to(device)
|
|
if F.is_recording():
|
|
emb = F.attach_grad(emb)
|
|
self._trace.append((node_ids.to(device, non_blocking=True), emb))
|
|
return emb
|
|
|
|
@property
|
|
def store(self):
|
|
"""Return torch.distributed.TCPStore for
|
|
meta data sharing across processes.
|
|
|
|
Returns
|
|
-------
|
|
torch.distributed.TCPStore
|
|
KVStore used for meta data sharing.
|
|
"""
|
|
return self._store
|
|
|
|
@property
|
|
def rank(self):
|
|
"""Return rank of current process.
|
|
|
|
Returns
|
|
-------
|
|
int
|
|
The rank of current process.
|
|
"""
|
|
return self._rank
|
|
|
|
@property
|
|
def world_size(self):
|
|
"""Return world size of the pytorch distributed training env.
|
|
|
|
Returns
|
|
-------
|
|
int
|
|
The world size of the pytorch distributed training env.
|
|
"""
|
|
return self._world_size
|
|
|
|
@property
|
|
def name(self):
|
|
"""Return the name of NodeEmbedding.
|
|
|
|
Returns
|
|
-------
|
|
str
|
|
The name of NodeEmbedding.
|
|
"""
|
|
return self._name
|
|
|
|
@property
|
|
def num_embeddings(self):
|
|
"""Return the number of embeddings.
|
|
|
|
Returns
|
|
-------
|
|
int
|
|
The number of embeddings.
|
|
"""
|
|
return self._num_embeddings
|
|
|
|
def set_optm_state(self, state):
|
|
"""Store the optimizer related state tensor.
|
|
|
|
Parameters
|
|
----------
|
|
state : tuple of torch.Tensor
|
|
Optimizer related state.
|
|
"""
|
|
self._optm_state = state
|
|
|
|
@property
|
|
def optm_state(self):
|
|
"""Return the optimizer related state tensor.
|
|
|
|
Returns
|
|
-------
|
|
tuple of torch.Tensor
|
|
The optimizer related state.
|
|
"""
|
|
return self._optm_state
|
|
|
|
@property
|
|
def trace(self):
|
|
"""Return a trace of the indices of embeddings
|
|
used in the training step(s).
|
|
|
|
Returns
|
|
-------
|
|
[torch.Tensor]
|
|
The indices of embeddings used in the training step(s).
|
|
"""
|
|
return self._trace
|
|
|
|
def reset_trace(self):
|
|
"""Clean up the trace of the indices of embeddings
|
|
used in the training step(s).
|
|
"""
|
|
self._trace = []
|
|
|
|
@property
|
|
def emb_tensor(self):
|
|
"""Return the tensor storing the node embeddings
|
|
|
|
Returns
|
|
-------
|
|
torch.Tensor
|
|
The tensor storing the node embeddings
|
|
"""
|
|
return self._tensor
|