项目文件夹

文件
Minjie Wang 44089c8b4d [Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:30:41 +08:00

126 行
4.6 KiB
Python

import dgl
import random
import torch
import numpy as np
import pandas as pd
from sklearn.preprocessing import StandardScaler
from load_data import *
from utils import *
from model import *
from sensors2graph import *
import torch.nn as nn
import argparse
import scipy.sparse as sp
parser = argparse.ArgumentParser(description='STGCN_WAVE')
parser.add_argument('--lr', default=0.001, type=float, help='learning rate')
parser.add_argument('--disablecuda', action='store_true', help='Disable CUDA')
parser.add_argument('--batch_size', type=int, default=50, help='batch size for training and validation (default: 50)')
parser.add_argument('--epochs', type=int, default=50, help='epochs for training (default: 50)')
parser.add_argument('--num_layers', type=int, default=9, help='number of layers')
parser.add_argument('--window', type=int, default=144, help='window length')
parser.add_argument('--sensorsfilepath', type=str, default='./data/sensor_graph/graph_sensor_ids.txt', help='sensors file path')
parser.add_argument('--disfilepath', type=str, default='./data/sensor_graph/distances_la_2012.csv', help='distance file path')
parser.add_argument('--tsfilepath', type=str, default='./data/metr-la.h5', help='ts file path')
parser.add_argument('--savemodelpath', type=str, default='stgcnwavemodel.pt', help='save model path')
parser.add_argument('--pred_len', type=int, default=5, help='how many steps away we want to predict')
parser.add_argument('--control_str', type=str, default='TNTSTNTST', help='model strcture controller, T: Temporal Layer, S: Spatio Layer, N: Norm Layer')
parser.add_argument('--channels', type=int, nargs='+', default=[1, 16, 32, 64, 32, 128], help='model strcture controller, T: Temporal Layer, S: Spatio Layer, N: Norm Layer')
args = parser.parse_args()
device = torch.device("cuda") if torch.cuda.is_available() and not args.disablecuda else torch.device("cpu")
with open(args.sensorsfilepath) as f:
sensor_ids = f.read().strip().split(',')
distance_df = pd.read_csv(args.disfilepath, dtype={'from': 'str', 'to': 'str'})
adj_mx = get_adjacency_matrix(distance_df, sensor_ids)
sp_mx = sp.coo_matrix(adj_mx)
G = dgl.from_scipy(sp_mx)
df = pd.read_hdf(args.tsfilepath)
num_samples, num_nodes = df.shape
tsdata = df.to_numpy()
n_his = args.window
save_path = args.savemodelpath
n_pred = args.pred_len
n_route = num_nodes
blocks = args.channels
# blocks = [1, 16, 32, 64, 32, 128]
drop_prob = 0
num_layers = args.num_layers
batch_size = args.batch_size
epochs = args.epochs
lr = args.lr
W = adj_mx
len_val = round(num_samples * 0.1)
len_train = round(num_samples * 0.7)
train = df[: len_train]
val = df[len_train: len_train + len_val]
test = df[len_train + len_val:]
scaler = StandardScaler()
train = scaler.fit_transform(train)
val = scaler.transform(val)
test = scaler.transform(test)
x_train, y_train = data_transform(train, n_his, n_pred, device)
x_val, y_val = data_transform(val, n_his, n_pred, device)
x_test, y_test = data_transform(test, n_his, n_pred, device)
train_data = torch.utils.data.TensorDataset(x_train, y_train)
train_iter = torch.utils.data.DataLoader(train_data, batch_size, shuffle=True)
val_data = torch.utils.data.TensorDataset(x_val, y_val)
val_iter = torch.utils.data.DataLoader(val_data, batch_size)
test_data = torch.utils.data.TensorDataset(x_test, y_test)
test_iter = torch.utils.data.DataLoader(test_data, batch_size)
loss = nn.MSELoss()
G = G.to(device)
model = STGCN_WAVE(blocks, n_his, n_route, G, drop_prob, num_layers, args.control_str).to(device)
optimizer = torch.optim.RMSprop(model.parameters(), lr=lr)
scheduler = torch.optim.lr_scheduler.StepLR(optimizer, step_size=5, gamma=0.7)
min_val_loss = np.inf
for epoch in range(1, epochs + 1):
l_sum, n = 0.0, 0
model.train()
for x, y in train_iter:
y_pred = model(x).view(len(x), -1)
l = loss(y_pred, y)
optimizer.zero_grad()
l.backward()
optimizer.step()
l_sum += l.item() * y.shape[0]
n += y.shape[0]
scheduler.step()
val_loss = evaluate_model(model, loss, val_iter)
if val_loss < min_val_loss:
min_val_loss = val_loss
torch.save(model.state_dict(), save_path)
print("epoch", epoch, ", train loss:", l_sum / n, ", validation loss:", val_loss)
best_model = STGCN_WAVE(blocks, n_his, n_route, G, drop_prob, num_layers).to(device)
best_model.load_state_dict(torch.load(save_path))
l = evaluate_model(best_model, loss, test_iter)
MAE, MAPE, RMSE = evaluate_metric(best_model, test_iter, scaler)
print("test loss:", l, "\nMAE:", MAE, ", MAPE:", MAPE, ", RMSE:", RMSE)