项目文件夹

文件
Minjie Wang 44089c8b4d [Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:30:41 +08:00

102 行
3.3 KiB
C++

#include <dgl/graph_serializer.h>
#include <dgl/immutable_graph.h>
#include <dmlc/memory_io.h>
#include <gtest/gtest.h>
#include <algorithm>
#include <iostream>
#include <memory>
#include <vector>
#include "../../src/graph/heterograph.h"
#include "../../src/graph/unit_graph.h"
#include "./common.h"
using namespace dgl;
using namespace dgl::aten;
using namespace dmlc;
TEST(Serialize, UnitGraph_COO) {
aten::CSRMatrix csr_matrix;
auto src = VecToIdArray<int64_t>({1, 2, 5, 3});
auto dst = VecToIdArray<int64_t>({1, 6, 2, 6});
auto mg = std::dynamic_pointer_cast<UnitGraph>(
dgl::UnitGraph::CreateFromCOO(2, 9, 8, src, dst, coo_code));
std::string blob;
dmlc::MemoryStringStream ifs(&blob);
static_cast<dmlc::Stream *>(&ifs)->Write(mg);
dmlc::MemoryStringStream ofs(&blob);
auto ug2 = Serializer::make_shared<UnitGraph>();
static_cast<dmlc::Stream *>(&ofs)->Read(&ug2);
EXPECT_EQ(ug2->NumVertices(0), 9);
EXPECT_EQ(ug2->NumVertices(1), 8);
EXPECT_EQ(ug2->NumEdges(0), 4);
EXPECT_EQ(ug2->FindEdge(0, 1).first, 2);
EXPECT_EQ(ug2->FindEdge(0, 1).second, 6);
}
TEST(Serialize, UnitGraph_CSR) {
aten::CSRMatrix csr_matrix;
auto src = VecToIdArray<int64_t>({1, 2, 5, 3});
auto dst = VecToIdArray<int64_t>({1, 6, 2, 6});
auto coo_g = std::dynamic_pointer_cast<UnitGraph>(
dgl::UnitGraph::CreateFromCOO(2, 9, 8, src, dst));
auto csr_g =
std::dynamic_pointer_cast<UnitGraph>(coo_g->GetGraphInFormat(csr_code));
std::string blob;
dmlc::MemoryStringStream ifs(&blob);
static_cast<dmlc::Stream *>(&ifs)->Write(csr_g);
dmlc::MemoryStringStream ofs(&blob);
auto ug2 = Serializer::make_shared<UnitGraph>();
static_cast<dmlc::Stream *>(&ofs)->Read(&ug2);
// Query operation is not supported on CSR, how to check it?
}
TEST(Serialize, ImmutableGraph) {
auto src = VecToIdArray<int64_t>({1, 2, 5, 3});
auto dst = VecToIdArray<int64_t>({1, 6, 2, 6});
auto gptr = ImmutableGraph::CreateFromCOO(10, src, dst);
std::string blob;
dmlc::MemoryStringStream ifs(&blob);
static_cast<dmlc::Stream *>(&ifs)->Write(gptr);
dmlc::MemoryStringStream ofs(&blob);
auto rptr_read = dgl::Serializer::make_shared<ImmutableGraph>();
static_cast<dmlc::Stream *>(&ofs)->Read(&rptr_read);
EXPECT_EQ(rptr_read->NumEdges(), 4);
EXPECT_EQ(rptr_read->NumVertices(), 10);
EXPECT_EQ(rptr_read->FindEdge(2).first, 5);
EXPECT_EQ(rptr_read->FindEdge(2).second, 2);
}
TEST(Serialize, HeteroGraph) {
auto src = VecToIdArray<int64_t>({1, 2, 5, 3});
auto dst = VecToIdArray<int64_t>({1, 6, 2, 6});
auto mg1 = dgl::UnitGraph::CreateFromCOO(2, 9, 8, src, dst);
src = VecToIdArray<int64_t>({6, 2, 5, 1, 8});
dst = VecToIdArray<int64_t>({5, 2, 4, 8, 0});
auto mg2 = dgl::UnitGraph::CreateFromCOO(1, 9, 9, src, dst);
std::vector<HeteroGraphPtr> relgraphs;
relgraphs.push_back(mg1);
relgraphs.push_back(mg2);
src = VecToIdArray<int64_t>({0, 0});
dst = VecToIdArray<int64_t>({1, 0});
auto meta_gptr = ImmutableGraph::CreateFromCOO(3, src, dst);
auto hrptr = std::make_shared<HeteroGraph>(meta_gptr, relgraphs);
std::string blob;
dmlc::MemoryStringStream ifs(&blob);
static_cast<dmlc::Stream *>(&ifs)->Write(hrptr);
dmlc::MemoryStringStream ofs(&blob);
auto gptr = dgl::Serializer::make_shared<HeteroGraph>();
static_cast<dmlc::Stream *>(&ofs)->Read(&gptr);
EXPECT_EQ(gptr->NumVertices(0), 9);
EXPECT_EQ(gptr->NumVertices(1), 8);
}