dmlc--dgl
44089c8b4d
* Merge * [Graph][CUDA] Graph on GPU and many refactoring (#1791) * change edge_ids behavior and C++ impl * fix unittests; remove utils.Index in edge_id * pass mx and th tests * pass tf test * add aten::Scatter_ * Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix * CSRGetData and CSRGetDataAndIndices passed tests * CSRSliceMatrix basic tests * fix bug in empty slice * CUDA CSRHasDuplicate * has_node; has_edge_between * predecessors, successors * deprecate send/recv; fix send_and_recv * deprecate send/recv; fix send_and_recv * in_edges; out_edges; all_edges; apply_edges * in deg/out deg * subgraph/edge_subgraph * adj * in_subgraph/out_subgraph * sample neighbors * set/get_n/e_repr * wip: working on refactoring all idtypes * pass ndata/edata tests on gpu * fix * stash * workaround nonzero issue * stash * nx conversion * test_hetero_basics except update routines * test_update_routines * test_hetero_basics for pytorch * more fixes * WIP: flatten graph * wip: flatten * test_flatten * test_to_device * fix bug in to_homo * fix bug in CSRSliceMatrix * pass subgraph test * fix send_and_recv * fix filter * test_heterograph * passed all pytorch tests * fix mx unittest * fix pytorch test_nn * fix all unittests for PyTorch * passed all mxnet tests * lint * fix tf nn test * pass all tf tests * lint * lint * change deprecation * try fix compile * lint * update METIDS * fix utest * fix * fix utests * try debug * revert * small fix * fix utests * upd * upd * upd * fix * upd * upd * upd * upd * upd * trigger * +1s * [kernel] Use heterograph index instead of unitgraph index (#1813) * upd * upd * upd * fix * upd * upd * upd * upd * upd * trigger * +1s * [Graph] Mutation for Heterograph (#1818) * mutation add_nodes and add_edges * Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop * Fix Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> * upd * upd * upd * fix * [Transfom] Mutable transform (#1833) * add nodesy * All three * Fix * lint * Add some test case * Fix * Fix * Fix * Fix * Fix * Fix * fix * triger * Fix * fix Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> * [Graph] Migrate Batch & Readout module to heterograph (#1836) * dgl.batch * unbatch * fix to device * reduce readout; segment reduce * change batch_num_nodes|edges to function * reduce readout/ softmax * broadcast * topk * fix * fix tf and mx * fix some ci * fix batch but unbatch differently * new checkk * upd * upd * upd * idtype behavior; code reorg * idtype behavior; code reorg * wip: test_basics * pass test_basics * WIP: from nx/ to nx * missing files * upd * pass test_basics:test_nx_conversion * Fix test * Fix inplace update * WIP: fixing tests * upd * pass test_transform cpu * pass gpu test_transform * pass test_batched_graph * GPU graph auto cast to int32 * missing file * stash * WIP: rgcn-hetero * Fix two datasety * upd * weird * Fix capsuley * fuck you * fuck matthias * Fix dgmg * fix bug in block degrees; pass rgcn-hetero * rgcn * gat and diffpool fix also fix ppi and tu dataset * Tree LSTM * pointcloud * rrn; wip: sgc * resolve conflicts * upd * sgc and reddit dataset * upd * Fix deepwalk, gindt and gcn * fix datasets and sign * optimization * optimization * upd * upd * Fix GIN * fix bug in add_nodes add_edges; tagcn * adaptive sampling and gcmc * upd * upd * fix geometric * fix * metapath2vec * fix agnn * fix pickling problem of block * fix utests * miss file * linegraph * upd * upd * upd * graphsage * stgcn_wave * fix hgt * on unittests * Fix transformer * Fix HAN * passed pytorch unittests * lint * fix * Fix cluster gcn * cluster-gcn is ready * on fixing block related codes * 2nd order derivative * Revert "2nd order derivative" This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206. * passed torch utests again * fix all mxnet unittests * delete some useless tests * pass all tf cpu tests * disable * disable distributed unittest * fix * fix * lint * fix * fix * fix script * fix tutorial * fix apply edges bug * fix 2 basics * fix tutorial Co-authored-by: yzh119 <expye@outlook.com> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
113 行
3.9 KiB
Python
113 行
3.9 KiB
Python
"""
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Improved Semantic Representations From Tree-Structured Long Short-Term Memory Networks
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https://arxiv.org/abs/1503.00075
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"""
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import time
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import itertools
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import networkx as nx
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import numpy as np
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import torch as th
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import torch.nn as nn
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import torch.nn.functional as F
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import dgl
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class TreeLSTMCell(nn.Module):
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def __init__(self, x_size, h_size):
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super(TreeLSTMCell, self).__init__()
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self.W_iou = nn.Linear(x_size, 3 * h_size, bias=False)
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self.U_iou = nn.Linear(2 * h_size, 3 * h_size, bias=False)
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self.b_iou = nn.Parameter(th.zeros(1, 3 * h_size))
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self.U_f = nn.Linear(2 * h_size, 2 * h_size)
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def message_func(self, edges):
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return {'h': edges.src['h'], 'c': edges.src['c']}
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def reduce_func(self, nodes):
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h_cat = nodes.mailbox['h'].view(nodes.mailbox['h'].size(0), -1)
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f = th.sigmoid(self.U_f(h_cat)).view(*nodes.mailbox['h'].size())
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c = th.sum(f * nodes.mailbox['c'], 1)
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return {'iou': self.U_iou(h_cat), 'c': c}
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def apply_node_func(self, nodes):
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iou = nodes.data['iou'] + self.b_iou
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i, o, u = th.chunk(iou, 3, 1)
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i, o, u = th.sigmoid(i), th.sigmoid(o), th.tanh(u)
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c = i * u + nodes.data['c']
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h = o * th.tanh(c)
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return {'h' : h, 'c' : c}
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class ChildSumTreeLSTMCell(nn.Module):
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def __init__(self, x_size, h_size):
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super(ChildSumTreeLSTMCell, self).__init__()
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self.W_iou = nn.Linear(x_size, 3 * h_size, bias=False)
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self.U_iou = nn.Linear(h_size, 3 * h_size, bias=False)
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self.b_iou = nn.Parameter(th.zeros(1, 3 * h_size))
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self.U_f = nn.Linear(h_size, h_size)
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def message_func(self, edges):
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return {'h': edges.src['h'], 'c': edges.src['c']}
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def reduce_func(self, nodes):
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h_tild = th.sum(nodes.mailbox['h'], 1)
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f = th.sigmoid(self.U_f(nodes.mailbox['h']))
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c = th.sum(f * nodes.mailbox['c'], 1)
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return {'iou': self.U_iou(h_tild), 'c': c}
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def apply_node_func(self, nodes):
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iou = nodes.data['iou'] + self.b_iou
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i, o, u = th.chunk(iou, 3, 1)
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i, o, u = th.sigmoid(i), th.sigmoid(o), th.tanh(u)
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c = i * u + nodes.data['c']
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h = o * th.tanh(c)
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return {'h': h, 'c': c}
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class TreeLSTM(nn.Module):
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def __init__(self,
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num_vocabs,
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x_size,
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h_size,
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num_classes,
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dropout,
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cell_type='nary',
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pretrained_emb=None):
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super(TreeLSTM, self).__init__()
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self.x_size = x_size
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self.embedding = nn.Embedding(num_vocabs, x_size)
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if pretrained_emb is not None:
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print('Using glove')
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self.embedding.weight.data.copy_(pretrained_emb)
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self.embedding.weight.requires_grad = True
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self.dropout = nn.Dropout(dropout)
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self.linear = nn.Linear(h_size, num_classes)
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cell = TreeLSTMCell if cell_type == 'nary' else ChildSumTreeLSTMCell
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self.cell = cell(x_size, h_size)
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def forward(self, batch, g, h, c):
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"""Compute tree-lstm prediction given a batch.
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Parameters
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----------
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batch : dgl.data.SSTBatch
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The data batch.
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g : dgl.DGLGraph
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Tree for computation.
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h : Tensor
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Initial hidden state.
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c : Tensor
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Initial cell state.
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Returns
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-------
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logits : Tensor
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The prediction of each node.
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"""
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# feed embedding
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embeds = self.embedding(batch.wordid * batch.mask)
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g.ndata['iou'] = self.cell.W_iou(self.dropout(embeds)) * batch.mask.float().unsqueeze(-1)
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g.ndata['h'] = h
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g.ndata['c'] = c
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# propagate
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dgl.prop_nodes_topo(g, self.cell.message_func, self.cell.reduce_func, apply_node_func=self.cell.apply_node_func)
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# compute logits
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h = self.dropout(g.ndata.pop('h'))
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logits = self.linear(h)
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return logits
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