项目文件夹

文件
Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00

885 行
27 KiB
Python

import torch as th
import networkx as nx
import dgl
import dgl.nn.pytorch as nn
import dgl.function as fn
import backend as F
import pytest
from test_utils.graph_cases import get_cases, random_graph, random_bipartite, random_dglgraph
from copy import deepcopy
import numpy as np
import scipy as sp
def _AXWb(A, X, W, b):
X = th.matmul(X, W)
Y = th.matmul(A, X.view(X.shape[0], -1)).view_as(X)
return Y + b
def test_graph_conv():
g = dgl.DGLGraph(nx.path_graph(3))
ctx = F.ctx()
adj = g.adjacency_matrix(ctx=ctx)
conv = nn.GraphConv(5, 2, norm='none', bias=True)
conv = conv.to(ctx)
print(conv)
# test#1: basic
h0 = F.ones((3, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
assert F.allclose(h1, _AXWb(adj, h0, conv.weight, conv.bias))
# test#2: more-dim
h0 = F.ones((3, 5, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
assert F.allclose(h1, _AXWb(adj, h0, conv.weight, conv.bias))
conv = nn.GraphConv(5, 2)
conv = conv.to(ctx)
# test#3: basic
h0 = F.ones((3, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
# test#4: basic
h0 = F.ones((3, 5, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
conv = nn.GraphConv(5, 2)
conv = conv.to(ctx)
# test#3: basic
h0 = F.ones((3, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
# test#4: basic
h0 = F.ones((3, 5, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
# test rest_parameters
old_weight = deepcopy(conv.weight.data)
conv.reset_parameters()
new_weight = conv.weight.data
assert not F.allclose(old_weight, new_weight)
@pytest.mark.parametrize('g', get_cases(['path', 'bipartite', 'small'], exclude=['zero-degree']))
@pytest.mark.parametrize('norm', ['none', 'both', 'right'])
@pytest.mark.parametrize('weight', [True, False])
@pytest.mark.parametrize('bias', [True, False])
def test_graph_conv2(g, norm, weight, bias):
conv = nn.GraphConv(5, 2, norm=norm, weight=weight, bias=bias).to(F.ctx())
ext_w = F.randn((5, 2)).to(F.ctx())
nsrc = g.number_of_nodes() if isinstance(g, dgl.DGLGraph) else g.number_of_src_nodes()
ndst = g.number_of_nodes() if isinstance(g, dgl.DGLGraph) else g.number_of_dst_nodes()
h = F.randn((nsrc, 5)).to(F.ctx())
if weight:
h = conv(g, h)
else:
h = conv(g, h, weight=ext_w)
assert h.shape == (ndst, 2)
def _S2AXWb(A, N, X, W, b):
X1 = X * N
X1 = th.matmul(A, X1.view(X1.shape[0], -1))
X1 = X1 * N
X2 = X1 * N
X2 = th.matmul(A, X2.view(X2.shape[0], -1))
X2 = X2 * N
X = th.cat([X, X1, X2], dim=-1)
Y = th.matmul(X, W.rot90())
return Y + b
def test_tagconv():
g = dgl.DGLGraph(nx.path_graph(3))
ctx = F.ctx()
adj = g.adjacency_matrix(ctx=ctx)
norm = th.pow(g.in_degrees().float(), -0.5)
conv = nn.TAGConv(5, 2, bias=True)
conv = conv.to(ctx)
print(conv)
# test#1: basic
h0 = F.ones((3, 5))
h1 = conv(g, h0)
assert len(g.ndata) == 0
assert len(g.edata) == 0
shp = norm.shape + (1,) * (h0.dim() - 1)
norm = th.reshape(norm, shp).to(ctx)
assert F.allclose(h1, _S2AXWb(adj, norm, h0, conv.lin.weight, conv.lin.bias))
conv = nn.TAGConv(5, 2)
conv = conv.to(ctx)
# test#2: basic
h0 = F.ones((3, 5))
h1 = conv(g, h0)
assert h1.shape[-1] == 2
# test reset_parameters
old_weight = deepcopy(conv.lin.weight.data)
conv.reset_parameters()
new_weight = conv.lin.weight.data
assert not F.allclose(old_weight, new_weight)
def test_set2set():
ctx = F.ctx()
g = dgl.DGLGraph(nx.path_graph(10))
s2s = nn.Set2Set(5, 3, 3) # hidden size 5, 3 iters, 3 layers
s2s = s2s.to(ctx)
print(s2s)
# test#1: basic
h0 = F.randn((g.number_of_nodes(), 5))
h1 = s2s(g, h0)
assert h1.shape[0] == 1 and h1.shape[1] == 10 and h1.dim() == 2
# test#2: batched graph
g1 = dgl.DGLGraph(nx.path_graph(11))
g2 = dgl.DGLGraph(nx.path_graph(5))
bg = dgl.batch([g, g1, g2])
h0 = F.randn((bg.number_of_nodes(), 5))
h1 = s2s(bg, h0)
assert h1.shape[0] == 3 and h1.shape[1] == 10 and h1.dim() == 2
def test_glob_att_pool():
ctx = F.ctx()
g = dgl.DGLGraph(nx.path_graph(10))
gap = nn.GlobalAttentionPooling(th.nn.Linear(5, 1), th.nn.Linear(5, 10))
gap = gap.to(ctx)
print(gap)
# test#1: basic
h0 = F.randn((g.number_of_nodes(), 5))
h1 = gap(g, h0)
assert h1.shape[0] == 1 and h1.shape[1] == 10 and h1.dim() == 2
# test#2: batched graph
bg = dgl.batch([g, g, g, g])
h0 = F.randn((bg.number_of_nodes(), 5))
h1 = gap(bg, h0)
assert h1.shape[0] == 4 and h1.shape[1] == 10 and h1.dim() == 2
def test_simple_pool():
ctx = F.ctx()
g = dgl.DGLGraph(nx.path_graph(15))
sum_pool = nn.SumPooling()
avg_pool = nn.AvgPooling()
max_pool = nn.MaxPooling()
sort_pool = nn.SortPooling(10) # k = 10
print(sum_pool, avg_pool, max_pool, sort_pool)
# test#1: basic
h0 = F.randn((g.number_of_nodes(), 5))
sum_pool = sum_pool.to(ctx)
avg_pool = avg_pool.to(ctx)
max_pool = max_pool.to(ctx)
sort_pool = sort_pool.to(ctx)
h1 = sum_pool(g, h0)
assert F.allclose(F.squeeze(h1, 0), F.sum(h0, 0))
h1 = avg_pool(g, h0)
assert F.allclose(F.squeeze(h1, 0), F.mean(h0, 0))
h1 = max_pool(g, h0)
assert F.allclose(F.squeeze(h1, 0), F.max(h0, 0))
h1 = sort_pool(g, h0)
assert h1.shape[0] == 1 and h1.shape[1] == 10 * 5 and h1.dim() == 2
# test#2: batched graph
g_ = dgl.DGLGraph(nx.path_graph(5))
bg = dgl.batch([g, g_, g, g_, g])
h0 = F.randn((bg.number_of_nodes(), 5))
h1 = sum_pool(bg, h0)
truth = th.stack([F.sum(h0[:15], 0),
F.sum(h0[15:20], 0),
F.sum(h0[20:35], 0),
F.sum(h0[35:40], 0),
F.sum(h0[40:55], 0)], 0)
assert F.allclose(h1, truth)
h1 = avg_pool(bg, h0)
truth = th.stack([F.mean(h0[:15], 0),
F.mean(h0[15:20], 0),
F.mean(h0[20:35], 0),
F.mean(h0[35:40], 0),
F.mean(h0[40:55], 0)], 0)
assert F.allclose(h1, truth)
h1 = max_pool(bg, h0)
truth = th.stack([F.max(h0[:15], 0),
F.max(h0[15:20], 0),
F.max(h0[20:35], 0),
F.max(h0[35:40], 0),
F.max(h0[40:55], 0)], 0)
assert F.allclose(h1, truth)
h1 = sort_pool(bg, h0)
assert h1.shape[0] == 5 and h1.shape[1] == 10 * 5 and h1.dim() == 2
def test_set_trans():
ctx = F.ctx()
g = dgl.DGLGraph(nx.path_graph(15))
st_enc_0 = nn.SetTransformerEncoder(50, 5, 10, 100, 2, 'sab')
st_enc_1 = nn.SetTransformerEncoder(50, 5, 10, 100, 2, 'isab', 3)
st_dec = nn.SetTransformerDecoder(50, 5, 10, 100, 2, 4)
st_enc_0 = st_enc_0.to(ctx)
st_enc_1 = st_enc_1.to(ctx)
st_dec = st_dec.to(ctx)
print(st_enc_0, st_enc_1, st_dec)
# test#1: basic
h0 = F.randn((g.number_of_nodes(), 50))
h1 = st_enc_0(g, h0)
assert h1.shape == h0.shape
h1 = st_enc_1(g, h0)
assert h1.shape == h0.shape
h2 = st_dec(g, h1)
assert h2.shape[0] == 1 and h2.shape[1] == 200 and h2.dim() == 2
# test#2: batched graph
g1 = dgl.DGLGraph(nx.path_graph(5))
g2 = dgl.DGLGraph(nx.path_graph(10))
bg = dgl.batch([g, g1, g2])
h0 = F.randn((bg.number_of_nodes(), 50))
h1 = st_enc_0(bg, h0)
assert h1.shape == h0.shape
h1 = st_enc_1(bg, h0)
assert h1.shape == h0.shape
h2 = st_dec(bg, h1)
assert h2.shape[0] == 3 and h2.shape[1] == 200 and h2.dim() == 2
def uniform_attention(g, shape):
a = th.ones(shape)
target_shape = (g.number_of_edges(),) + (1,) * (len(shape) - 1)
return a / g.in_degrees(g.edges()[1]).view(target_shape).float()
def test_edge_softmax():
# Basic
g = dgl.DGLGraph(nx.path_graph(3))
edata = F.ones((g.number_of_edges(), 1))
a = nn.edge_softmax(g, edata)
assert len(g.ndata) == 0
assert len(g.edata) == 0
assert F.allclose(a, uniform_attention(g, a.shape))
# Test higher dimension case
edata = F.ones((g.number_of_edges(), 3, 1))
a = nn.edge_softmax(g, edata)
assert len(g.ndata) == 0
assert len(g.edata) == 0
assert F.allclose(a, uniform_attention(g, a.shape))
# Test both forward and backward with PyTorch built-in softmax.
g = dgl.DGLGraph()
g.add_nodes(30)
# build a complete graph
for i in range(30):
for j in range(30):
g.add_edge(i, j)
score = F.randn((900, 1))
score.requires_grad_()
grad = F.randn((900, 1))
y = F.softmax(score.view(30, 30), dim=0).view(-1, 1)
y.backward(grad)
grad_score = score.grad
score.grad.zero_()
y_dgl = nn.edge_softmax(g, score)
assert len(g.ndata) == 0
assert len(g.edata) == 0
# check forward
assert F.allclose(y_dgl, y)
y_dgl.backward(grad)
# checkout gradient
assert F.allclose(score.grad, grad_score)
print(score.grad[:10], grad_score[:10])
# Test 2
def generate_rand_graph(n, m=None, ctor=dgl.DGLGraph):
if m is None:
m = n
arr = (sp.sparse.random(m, n, density=0.1, format='coo') != 0).astype(np.int64)
return ctor(arr, readonly=True)
for g in [generate_rand_graph(50),
generate_rand_graph(50, ctor=dgl.graph),
generate_rand_graph(100, 50, ctor=dgl.bipartite)]:
a1 = F.randn((g.number_of_edges(), 1)).requires_grad_()
a2 = a1.clone().detach().requires_grad_()
g.edata['s'] = a1
g.group_apply_edges('dst', lambda edges: {'ss':F.softmax(edges.data['s'], 1)})
g.edata['ss'].sum().backward()
builtin_sm = nn.edge_softmax(g, a2)
builtin_sm.sum().backward()
print(a1.grad - a2.grad)
assert len(g.srcdata) == 0
assert len(g.dstdata) == 0
assert len(g.edata) == 2
assert F.allclose(a1.grad, a2.grad, rtol=1e-4, atol=1e-4) # Follow tolerance in unittest backend
def test_partial_edge_softmax():
g = dgl.DGLGraph()
g.add_nodes(30)
# build a complete graph
for i in range(30):
for j in range(30):
g.add_edge(i, j)
score = F.randn((300, 1))
score.requires_grad_()
grad = F.randn((300, 1))
import numpy as np
eids = np.random.choice(900, 300, replace=False).astype('int64')
eids = F.zerocopy_from_numpy(eids)
# compute partial edge softmax
y_1 = nn.edge_softmax(g, score, eids)
y_1.backward(grad)
grad_1 = score.grad
score.grad.zero_()
# compute edge softmax on edge subgraph
subg = g.edge_subgraph(eids)
y_2 = nn.edge_softmax(subg, score)
y_2.backward(grad)
grad_2 = score.grad
score.grad.zero_()
assert F.allclose(y_1, y_2)
assert F.allclose(grad_1, grad_2)
def test_rgcn():
ctx = F.ctx()
etype = []
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
# 5 etypes
R = 5
for i in range(g.number_of_edges()):
etype.append(i % 5)
B = 2
I = 10
O = 8
rgc_basis = nn.RelGraphConv(I, O, R, "basis", B).to(ctx)
h = th.randn((100, I)).to(ctx)
r = th.tensor(etype).to(ctx)
h_new = rgc_basis(g, h, r)
assert list(h_new.shape) == [100, O]
rgc_bdd = nn.RelGraphConv(I, O, R, "bdd", B).to(ctx)
h = th.randn((100, I)).to(ctx)
r = th.tensor(etype).to(ctx)
h_new = rgc_bdd(g, h, r)
assert list(h_new.shape) == [100, O]
# with norm
norm = th.zeros((g.number_of_edges(), 1)).to(ctx)
rgc_basis = nn.RelGraphConv(I, O, R, "basis", B).to(ctx)
h = th.randn((100, I)).to(ctx)
r = th.tensor(etype).to(ctx)
h_new = rgc_basis(g, h, r, norm)
assert list(h_new.shape) == [100, O]
rgc_bdd = nn.RelGraphConv(I, O, R, "bdd", B).to(ctx)
h = th.randn((100, I)).to(ctx)
r = th.tensor(etype).to(ctx)
h_new = rgc_bdd(g, h, r, norm)
assert list(h_new.shape) == [100, O]
# id input
rgc_basis = nn.RelGraphConv(I, O, R, "basis", B).to(ctx)
h = th.randint(0, I, (100,)).to(ctx)
r = th.tensor(etype).to(ctx)
h_new = rgc_basis(g, h, r)
assert list(h_new.shape) == [100, O]
def test_gat_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
gat = nn.GATConv(5, 2, 4)
feat = F.randn((100, 5))
gat = gat.to(ctx)
h = gat(g, feat)
assert h.shape == (100, 4, 2)
g = dgl.bipartite(sp.sparse.random(100, 200, density=0.1))
gat = nn.GATConv((5, 10), 2, 4)
feat = (F.randn((100, 5)), F.randn((200, 10)))
gat = gat.to(ctx)
h = gat(g, feat)
assert h.shape == (200, 4, 2)
@pytest.mark.parametrize('aggre_type', ['mean', 'pool', 'gcn', 'lstm'])
def test_sage_conv(aggre_type):
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
sage = nn.SAGEConv(5, 10, aggre_type)
feat = F.randn((100, 5))
sage = sage.to(ctx)
h = sage(g, feat)
assert h.shape[-1] == 10
g = dgl.graph(sp.sparse.random(100, 100, density=0.1))
sage = nn.SAGEConv(5, 10, aggre_type)
feat = F.randn((100, 5))
sage = sage.to(ctx)
h = sage(g, feat)
assert h.shape[-1] == 10
g = dgl.bipartite(sp.sparse.random(100, 200, density=0.1))
dst_dim = 5 if aggre_type != 'gcn' else 10
sage = nn.SAGEConv((10, dst_dim), 2, aggre_type)
feat = (F.randn((100, 10)), F.randn((200, dst_dim)))
sage = sage.to(ctx)
h = sage(g, feat)
assert h.shape[-1] == 2
assert h.shape[0] == 200
def test_sgc_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
# not cached
sgc = nn.SGConv(5, 10, 3)
feat = F.randn((100, 5))
sgc = sgc.to(ctx)
h = sgc(g, feat)
assert h.shape[-1] == 10
# cached
sgc = nn.SGConv(5, 10, 3, True)
sgc = sgc.to(ctx)
h_0 = sgc(g, feat)
h_1 = sgc(g, feat + 1)
assert F.allclose(h_0, h_1)
assert h_0.shape[-1] == 10
def test_appnp_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
appnp = nn.APPNPConv(10, 0.1)
feat = F.randn((100, 5))
appnp = appnp.to(ctx)
h = appnp(g, feat)
assert h.shape[-1] == 5
@pytest.mark.parametrize('aggregator_type', ['mean', 'max', 'sum'])
def test_gin_conv(aggregator_type):
ctx = F.ctx()
g = dgl.graph(sp.sparse.random(100, 100, density=0.1))
gin = nn.GINConv(
th.nn.Linear(5, 12),
aggregator_type
)
feat = F.randn((100, 5))
gin = gin.to(ctx)
h = gin(g, feat)
assert h.shape == (100, 12)
g = dgl.bipartite(sp.sparse.random(100, 200, density=0.1))
gin = nn.GINConv(
th.nn.Linear(5, 12),
aggregator_type
)
feat = (F.randn((100, 5)), F.randn((200, 5)))
gin = gin.to(ctx)
h = gin(g, feat)
assert h.shape == (200, 12)
def test_agnn_conv():
ctx = F.ctx()
g = dgl.graph(sp.sparse.random(100, 100, density=0.1))
agnn = nn.AGNNConv(1)
feat = F.randn((100, 5))
agnn = agnn.to(ctx)
h = agnn(g, feat)
assert h.shape == (100, 5)
g = dgl.bipartite(sp.sparse.random(100, 200, density=0.1))
agnn = nn.AGNNConv(1)
feat = (F.randn((100, 5)), F.randn((200, 5)))
agnn = agnn.to(ctx)
h = agnn(g, feat)
assert h.shape == (200, 5)
def test_gated_graph_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
ggconv = nn.GatedGraphConv(5, 10, 5, 3)
etypes = th.arange(g.number_of_edges()) % 3
feat = F.randn((100, 5))
ggconv = ggconv.to(ctx)
etypes = etypes.to(ctx)
h = ggconv(g, feat, etypes)
# current we only do shape check
assert h.shape[-1] == 10
def test_nn_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
edge_func = th.nn.Linear(4, 5 * 10)
nnconv = nn.NNConv(5, 10, edge_func, 'mean')
feat = F.randn((100, 5))
efeat = F.randn((g.number_of_edges(), 4))
nnconv = nnconv.to(ctx)
h = nnconv(g, feat, efeat)
# currently we only do shape check
assert h.shape[-1] == 10
g = dgl.graph(sp.sparse.random(100, 100, density=0.1))
edge_func = th.nn.Linear(4, 5 * 10)
nnconv = nn.NNConv(5, 10, edge_func, 'mean')
feat = F.randn((100, 5))
efeat = F.randn((g.number_of_edges(), 4))
nnconv = nnconv.to(ctx)
h = nnconv(g, feat, efeat)
# currently we only do shape check
assert h.shape[-1] == 10
g = dgl.bipartite(sp.sparse.random(50, 100, density=0.1))
edge_func = th.nn.Linear(4, 5 * 10)
nnconv = nn.NNConv((5, 2), 10, edge_func, 'mean')
feat = F.randn((50, 5))
feat_dst = F.randn((100, 2))
efeat = F.randn((g.number_of_edges(), 4))
nnconv = nnconv.to(ctx)
h = nnconv(g, (feat, feat_dst), efeat)
# currently we only do shape check
assert h.shape[-1] == 10
def test_gmm_conv():
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
gmmconv = nn.GMMConv(5, 10, 3, 4, 'mean')
feat = F.randn((100, 5))
pseudo = F.randn((g.number_of_edges(), 3))
gmmconv = gmmconv.to(ctx)
h = gmmconv(g, feat, pseudo)
# currently we only do shape check
assert h.shape[-1] == 10
g = dgl.graph(sp.sparse.random(100, 100, density=0.1), readonly=True)
gmmconv = nn.GMMConv(5, 10, 3, 4, 'mean')
feat = F.randn((100, 5))
pseudo = F.randn((g.number_of_edges(), 3))
gmmconv = gmmconv.to(ctx)
h = gmmconv(g, feat, pseudo)
# currently we only do shape check
assert h.shape[-1] == 10
g = dgl.bipartite(sp.sparse.random(100, 50, density=0.1), readonly=True)
gmmconv = nn.GMMConv((5, 2), 10, 3, 4, 'mean')
feat = F.randn((100, 5))
feat_dst = F.randn((50, 2))
pseudo = F.randn((g.number_of_edges(), 3))
gmmconv = gmmconv.to(ctx)
h = gmmconv(g, (feat, feat_dst), pseudo)
# currently we only do shape check
assert h.shape[-1] == 10
@pytest.mark.parametrize('norm_type', ['both', 'right', 'none'])
@pytest.mark.parametrize('g', [random_graph(100), random_bipartite(100, 200)])
def test_dense_graph_conv(norm_type, g):
ctx = F.ctx()
# TODO(minjie): enable the following option after #1385
adj = g.adjacency_matrix(ctx=ctx).to_dense()
conv = nn.GraphConv(5, 2, norm=norm_type, bias=True)
dense_conv = nn.DenseGraphConv(5, 2, norm=norm_type, bias=True)
dense_conv.weight.data = conv.weight.data
dense_conv.bias.data = conv.bias.data
feat = F.randn((g.number_of_src_nodes(), 5))
conv = conv.to(ctx)
dense_conv = dense_conv.to(ctx)
out_conv = conv(g, feat)
out_dense_conv = dense_conv(adj, feat)
assert F.allclose(out_conv, out_dense_conv)
@pytest.mark.parametrize('g', [random_graph(100), random_bipartite(100, 200)])
def test_dense_sage_conv(g):
ctx = F.ctx()
adj = g.adjacency_matrix(ctx=ctx).to_dense()
sage = nn.SAGEConv(5, 2, 'gcn')
dense_sage = nn.DenseSAGEConv(5, 2)
dense_sage.fc.weight.data = sage.fc_neigh.weight.data
dense_sage.fc.bias.data = sage.fc_neigh.bias.data
if len(g.ntypes) == 2:
feat = (
F.randn((g.number_of_src_nodes(), 5)),
F.randn((g.number_of_dst_nodes(), 5))
)
else:
feat = F.randn((g.number_of_nodes(), 5))
sage = sage.to(ctx)
dense_sage = dense_sage.to(ctx)
out_sage = sage(g, feat)
out_dense_sage = dense_sage(adj, feat)
assert F.allclose(out_sage, out_dense_sage), g
@pytest.mark.parametrize('g', [random_dglgraph(20), random_graph(20), random_bipartite(20, 10)])
def test_edge_conv(g):
ctx = F.ctx()
edge_conv = nn.EdgeConv(5, 2).to(ctx)
print(edge_conv)
# test #1: basic
h0 = F.randn((g.number_of_src_nodes(), 5))
if not g.is_homograph():
# bipartite
h1 = edge_conv(g, (h0, h0[:10]))
else:
h1 = edge_conv(g, h0)
assert h1.shape == (g.number_of_dst_nodes(), 2)
def test_dense_cheb_conv():
for k in range(1, 4):
ctx = F.ctx()
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
adj = g.adjacency_matrix(ctx=ctx).to_dense()
cheb = nn.ChebConv(5, 2, k)
dense_cheb = nn.DenseChebConv(5, 2, k)
for i in range(len(cheb.fc)):
dense_cheb.W.data[i] = cheb.fc[i].weight.data.t()
if cheb.bias is not None:
dense_cheb.bias.data = cheb.bias.data
feat = F.randn((100, 5))
cheb = cheb.to(ctx)
dense_cheb = dense_cheb.to(ctx)
out_cheb = cheb(g, feat, [2.0])
out_dense_cheb = dense_cheb(adj, feat, 2.0)
assert F.allclose(out_cheb, out_dense_cheb)
def test_sequential():
ctx = F.ctx()
# Test single graph
class ExampleLayer(th.nn.Module):
def __init__(self):
super().__init__()
def forward(self, graph, n_feat, e_feat):
graph = graph.local_var()
graph.ndata['h'] = n_feat
graph.update_all(fn.copy_u('h', 'm'), fn.sum('m', 'h'))
n_feat += graph.ndata['h']
graph.apply_edges(fn.u_add_v('h', 'h', 'e'))
e_feat += graph.edata['e']
return n_feat, e_feat
g = dgl.DGLGraph()
g.add_nodes(3)
g.add_edges([0, 1, 2, 0, 1, 2, 0, 1, 2], [0, 0, 0, 1, 1, 1, 2, 2, 2])
net = nn.Sequential(ExampleLayer(), ExampleLayer(), ExampleLayer())
n_feat = F.randn((3, 4))
e_feat = F.randn((9, 4))
net = net.to(ctx)
n_feat, e_feat = net(g, n_feat, e_feat)
assert n_feat.shape == (3, 4)
assert e_feat.shape == (9, 4)
# Test multiple graph
class ExampleLayer(th.nn.Module):
def __init__(self):
super().__init__()
def forward(self, graph, n_feat):
graph = graph.local_var()
graph.ndata['h'] = n_feat
graph.update_all(fn.copy_u('h', 'm'), fn.sum('m', 'h'))
n_feat += graph.ndata['h']
return n_feat.view(graph.number_of_nodes() // 2, 2, -1).sum(1)
g1 = dgl.DGLGraph(nx.erdos_renyi_graph(32, 0.05))
g2 = dgl.DGLGraph(nx.erdos_renyi_graph(16, 0.2))
g3 = dgl.DGLGraph(nx.erdos_renyi_graph(8, 0.8))
net = nn.Sequential(ExampleLayer(), ExampleLayer(), ExampleLayer())
net = net.to(ctx)
n_feat = F.randn((32, 4))
n_feat = net([g1, g2, g3], n_feat)
assert n_feat.shape == (4, 4)
def test_atomic_conv():
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
aconv = nn.AtomicConv(interaction_cutoffs=F.tensor([12.0, 12.0]),
rbf_kernel_means=F.tensor([0.0, 2.0]),
rbf_kernel_scaling=F.tensor([4.0, 4.0]),
features_to_use=F.tensor([6.0, 8.0]))
ctx = F.ctx()
if F.gpu_ctx():
aconv = aconv.to(ctx)
feat = F.randn((100, 1))
dist = F.randn((g.number_of_edges(), 1))
h = aconv(g, feat, dist)
# current we only do shape check
assert h.shape[-1] == 4
def test_cf_conv():
g = dgl.DGLGraph(sp.sparse.random(100, 100, density=0.1), readonly=True)
cfconv = nn.CFConv(node_in_feats=2,
edge_in_feats=3,
hidden_feats=2,
out_feats=3)
ctx = F.ctx()
if F.gpu_ctx():
cfconv = cfconv.to(ctx)
node_feats = F.randn((100, 2))
edge_feats = F.randn((g.number_of_edges(), 3))
h = cfconv(g, node_feats, edge_feats)
# current we only do shape check
assert h.shape[-1] == 3
def myagg(alist, dsttype):
rst = alist[0]
for i in range(1, len(alist)):
rst = rst + (i + 1) * alist[i]
return rst
@pytest.mark.parametrize('agg', ['sum', 'max', 'min', 'mean', 'stack', myagg])
def test_hetero_conv(agg):
g = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (0, 2), (2, 1), (1, 3)],
('user', 'plays', 'game'): [(0, 0), (0, 2), (0, 3), (1, 0), (2, 2)],
('store', 'sells', 'game'): [(0, 0), (0, 3), (1, 1), (1, 2)]})
conv = nn.HeteroGraphConv({
'follows': nn.GraphConv(2, 3),
'plays': nn.GraphConv(2, 4),
'sells': nn.GraphConv(3, 4)},
agg)
if F.gpu_ctx():
conv = conv.to(F.ctx())
uf = F.randn((4, 2))
gf = F.randn((4, 4))
sf = F.randn((2, 3))
uf_dst = F.randn((4, 3))
gf_dst = F.randn((4, 4))
h = conv(g, {'user': uf})
assert set(h.keys()) == {'user', 'game'}
if agg != 'stack':
assert h['user'].shape == (4, 3)
assert h['game'].shape == (4, 4)
else:
assert h['user'].shape == (4, 1, 3)
assert h['game'].shape == (4, 1, 4)
h = conv(g, {'user': uf, 'store': sf})
assert set(h.keys()) == {'user', 'game'}
if agg != 'stack':
assert h['user'].shape == (4, 3)
assert h['game'].shape == (4, 4)
else:
assert h['user'].shape == (4, 1, 3)
assert h['game'].shape == (4, 2, 4)
h = conv(g, {'store': sf})
assert set(h.keys()) == {'game'}
if agg != 'stack':
assert h['game'].shape == (4, 4)
else:
assert h['game'].shape == (4, 1, 4)
# test with pair input
conv = nn.HeteroGraphConv({
'follows': nn.SAGEConv(2, 3, 'mean'),
'plays': nn.SAGEConv((2, 4), 4, 'mean'),
'sells': nn.SAGEConv(3, 4, 'mean')},
agg)
if F.gpu_ctx():
conv = conv.to(F.ctx())
h = conv(g, ({'user': uf}, {'user' : uf, 'game' : gf}))
assert set(h.keys()) == {'user', 'game'}
if agg != 'stack':
assert h['user'].shape == (4, 3)
assert h['game'].shape == (4, 4)
else:
assert h['user'].shape == (4, 1, 3)
assert h['game'].shape == (4, 1, 4)
# pair input requires both src and dst type features to be provided
h = conv(g, ({'user': uf}, {'game' : gf}))
assert set(h.keys()) == {'game'}
if agg != 'stack':
assert h['game'].shape == (4, 4)
else:
assert h['game'].shape == (4, 1, 4)
# test with mod args
class MyMod(th.nn.Module):
def __init__(self, s1, s2):
super(MyMod, self).__init__()
self.carg1 = 0
self.carg2 = 0
self.s1 = s1
self.s2 = s2
def forward(self, g, h, arg1=None, *, arg2=None):
if arg1 is not None:
self.carg1 += 1
if arg2 is not None:
self.carg2 += 1
return th.zeros((g.number_of_dst_nodes(), self.s2))
mod1 = MyMod(2, 3)
mod2 = MyMod(2, 4)
mod3 = MyMod(3, 4)
conv = nn.HeteroGraphConv({
'follows': mod1,
'plays': mod2,
'sells': mod3},
agg)
if F.gpu_ctx():
conv = conv.to(F.ctx())
mod_args = {'follows' : (1,), 'plays' : (1,)}
mod_kwargs = {'sells' : {'arg2' : 'abc'}}
h = conv(g, {'user' : uf, 'store' : sf}, mod_args=mod_args, mod_kwargs=mod_kwargs)
assert mod1.carg1 == 1
assert mod1.carg2 == 0
assert mod2.carg1 == 1
assert mod2.carg2 == 0
assert mod3.carg1 == 0
assert mod3.carg2 == 1
if __name__ == '__main__':
test_graph_conv()
test_edge_softmax()
test_partial_edge_softmax()
test_set2set()
test_glob_att_pool()
test_simple_pool()
test_set_trans()
test_rgcn()
test_tagconv()
test_gat_conv()
test_sage_conv()
test_sgc_conv()
test_appnp_conv()
test_gin_conv()
test_agnn_conv()
test_gated_graph_conv()
test_nn_conv()
test_gmm_conv()
test_dense_graph_conv()
test_dense_sage_conv()
test_dense_cheb_conv()
test_sequential()
test_atomic_conv()
test_cf_conv()