dmlc--dgl
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213 行
8.7 KiB
Python
213 行
8.7 KiB
Python
import dgl
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import backend as F
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from dgl.base import ALL
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def check_equivalence_between_heterographs(g1, g2, node_attrs=None, edge_attrs=None):
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assert g1.ntypes == g2.ntypes
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assert g1.etypes == g2.etypes
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assert g1.canonical_etypes == g2.canonical_etypes
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for nty in g1.ntypes:
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assert g1.number_of_nodes(nty) == g2.number_of_nodes(nty)
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for ety in g1.etypes:
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if len(g1._etype2canonical[ety]) > 0:
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assert g1.number_of_edges(ety) == g2.number_of_edges(ety)
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for ety in g1.canonical_etypes:
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assert g1.number_of_edges(ety) == g2.number_of_edges(ety)
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src1, dst1 = g1.all_edges(etype=ety)
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src2, dst2 = g2.all_edges(etype=ety)
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assert F.allclose(src1, src2)
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assert F.allclose(dst1, dst2)
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if node_attrs is not None:
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for nty in node_attrs.keys():
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for feat_name in node_attrs[nty]:
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assert F.allclose(g1.nodes[nty].data[feat_name], g2.nodes[nty].data[feat_name])
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if edge_attrs is not None:
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for ety in edge_attrs.keys():
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for feat_name in edge_attrs[ety]:
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assert F.allclose(g1.edges[ety].data[feat_name], g2.edges[ety].data[feat_name])
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def test_batching_hetero_topology():
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"""Test batching two DGLHeteroGraphs where some nodes are isolated in some relations"""
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g1 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'follows', 'developer'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0), (2, 1), (3, 1)]
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})
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g2 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'follows', 'developer'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0), (2, 1)]
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})
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bg = dgl.batch_hetero([g1, g2])
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assert bg.ntypes == g2.ntypes
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assert bg.etypes == g2.etypes
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assert bg.canonical_etypes == g2.canonical_etypes
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assert bg.batch_size == 2
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# Test number of nodes
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for ntype in bg.ntypes:
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assert bg.batch_num_nodes(ntype) == [
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g1.number_of_nodes(ntype), g2.number_of_nodes(ntype)]
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assert bg.number_of_nodes(ntype) == (
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g1.number_of_nodes(ntype) + g2.number_of_nodes(ntype))
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# Test number of edges
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assert bg.batch_num_edges('plays') == [
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g1.number_of_edges('plays'), g2.number_of_edges('plays')]
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assert bg.number_of_edges('plays') == (
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g1.number_of_edges('plays') + g2.number_of_edges('plays'))
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for etype in bg.canonical_etypes:
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assert bg.batch_num_edges(etype) == [
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g1.number_of_edges(etype), g2.number_of_edges(etype)]
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assert bg.number_of_edges(etype) == (
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g1.number_of_edges(etype) + g2.number_of_edges(etype))
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# Test relabeled nodes
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for ntype in bg.ntypes:
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assert list(F.asnumpy(bg.nodes(ntype))) == list(range(bg.number_of_nodes(ntype)))
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# Test relabeled edges
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src, dst = bg.all_edges(etype=('user', 'follows', 'user'))
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assert list(F.asnumpy(src)) == [0, 1, 4, 5]
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assert list(F.asnumpy(dst)) == [1, 2, 5, 6]
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src, dst = bg.all_edges(etype=('user', 'follows', 'developer'))
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assert list(F.asnumpy(src)) == [0, 1, 4, 5]
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assert list(F.asnumpy(dst)) == [1, 2, 4, 5]
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src, dst = bg.all_edges(etype='plays')
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assert list(F.asnumpy(src)) == [0, 1, 2, 3, 4, 5, 6]
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assert list(F.asnumpy(dst)) == [0, 0, 1, 1, 2, 2, 3]
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# Test unbatching graphs
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g3, g4 = dgl.unbatch_hetero(bg)
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check_equivalence_between_heterographs(g1, g3)
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check_equivalence_between_heterographs(g2, g4)
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def test_batching_hetero_and_batched_hetero_topology():
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"""Test batching a DGLHeteroGraph and a BatchedDGLHeteroGraph."""
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g1 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0)]
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})
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g2 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0)]
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})
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bg1 = dgl.batch_hetero([g1, g2])
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g3 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1)],
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('user', 'plays', 'game'): [(1, 0)]
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})
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bg2 = dgl.batch_hetero([bg1, g3])
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assert bg2.ntypes == g3.ntypes
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assert bg2.etypes == g3.etypes
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assert bg2.canonical_etypes == g3.canonical_etypes
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assert bg2.batch_size == 3
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# Test number of nodes
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for ntype in bg2.ntypes:
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assert bg2.batch_num_nodes(ntype) == [
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g1.number_of_nodes(ntype), g2.number_of_nodes(ntype), g3.number_of_nodes(ntype)]
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assert bg2.number_of_nodes(ntype) == (
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g1.number_of_nodes(ntype) + g2.number_of_nodes(ntype) + g3.number_of_nodes(ntype))
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# Test number of edges
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for etype in bg2.etypes:
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assert bg2.batch_num_edges(etype) == [
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g1.number_of_edges(etype), g2.number_of_edges(etype), g3.number_of_edges(etype)]
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assert bg2.number_of_edges(etype) == (
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g1.number_of_edges(etype) + g2.number_of_edges(etype) + g3.number_of_edges(etype))
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for etype in bg2.canonical_etypes:
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assert bg2.batch_num_edges(etype) == [
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g1.number_of_edges(etype), g2.number_of_edges(etype), g3.number_of_edges(etype)]
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assert bg2.number_of_edges(etype) == (
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g1.number_of_edges(etype) + g2.number_of_edges(etype) + g3.number_of_edges(etype))
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# Test relabeled nodes
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for ntype in bg2.ntypes:
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assert list(F.asnumpy(bg2.nodes(ntype))) == list(range(bg2.number_of_nodes(ntype)))
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# Test relabeled edges
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src, dst = bg2.all_edges(etype='follows')
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assert list(F.asnumpy(src)) == [0, 1, 3, 4, 6]
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assert list(F.asnumpy(dst)) == [1, 2, 4, 5, 7]
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src, dst = bg2.all_edges(etype='plays')
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assert list(F.asnumpy(src)) == [0, 1, 3, 4, 7]
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assert list(F.asnumpy(dst)) == [0, 0, 1, 1, 2]
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# Test unbatching graphs
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g4, g5, g6 = dgl.unbatch_hetero(bg2)
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check_equivalence_between_heterographs(g1, g4)
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check_equivalence_between_heterographs(g2, g5)
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check_equivalence_between_heterographs(g3, g6)
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def test_batched_features():
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"""Test the features of batched DGLHeteroGraphs"""
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g1 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0)]
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})
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g1.nodes['user'].data['h1'] = F.tensor([[0.], [1.], [2.]])
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g1.nodes['user'].data['h2'] = F.tensor([[3.], [4.], [5.]])
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g1.nodes['game'].data['h1'] = F.tensor([[0.]])
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g1.nodes['game'].data['h2'] = F.tensor([[1.]])
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g1.edges['follows'].data['h1'] = F.tensor([[0.], [1.]])
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g1.edges['follows'].data['h2'] = F.tensor([[2.], [3.]])
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g1.edges['plays'].data['h1'] = F.tensor([[0.], [1.]])
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g2 = dgl.heterograph({
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('user', 'follows', 'user'): [(0, 1), (1, 2)],
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('user', 'plays', 'game'): [(0, 0), (1, 0)]
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})
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g2.nodes['user'].data['h1'] = F.tensor([[0.], [1.], [2.]])
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g2.nodes['user'].data['h2'] = F.tensor([[3.], [4.], [5.]])
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g2.nodes['game'].data['h1'] = F.tensor([[0.]])
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g2.nodes['game'].data['h2'] = F.tensor([[1.]])
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g2.edges['follows'].data['h1'] = F.tensor([[0.], [1.]])
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g2.edges['follows'].data['h2'] = F.tensor([[2.], [3.]])
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g2.edges['plays'].data['h1'] = F.tensor([[0.], [1.]])
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bg = dgl.batch_hetero([g1, g2],
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node_attrs=ALL,
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edge_attrs={
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('user', 'follows', 'user'): 'h1',
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('user', 'plays', 'game'): None
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})
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assert F.allclose(bg.nodes['user'].data['h1'],
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F.cat([g1.nodes['user'].data['h1'], g2.nodes['user'].data['h1']], dim=0))
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assert F.allclose(bg.nodes['user'].data['h2'],
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F.cat([g1.nodes['user'].data['h2'], g2.nodes['user'].data['h2']], dim=0))
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assert F.allclose(bg.nodes['game'].data['h1'],
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F.cat([g1.nodes['game'].data['h1'], g2.nodes['game'].data['h1']], dim=0))
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assert F.allclose(bg.nodes['game'].data['h2'],
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F.cat([g1.nodes['game'].data['h2'], g2.nodes['game'].data['h2']], dim=0))
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assert F.allclose(bg.edges['follows'].data['h1'],
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F.cat([g1.edges['follows'].data['h1'], g2.edges['follows'].data['h1']], dim=0))
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assert 'h2' not in bg.edges['follows'].data.keys()
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assert 'h1' not in bg.edges['plays'].data.keys()
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# Test unbatching graphs
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g3, g4 = dgl.unbatch_hetero(bg)
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check_equivalence_between_heterographs(
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g1, g3,
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node_attrs={'user': ['h1', 'h2'], 'game': ['h1', 'h2']},
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edge_attrs={('user', 'follows', 'user'): ['h1']})
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check_equivalence_between_heterographs(
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g2, g4,
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node_attrs={'user': ['h1', 'h2'], 'game': ['h1', 'h2']},
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edge_attrs={('user', 'follows', 'user'): ['h1']})
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if __name__ == '__main__':
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test_batching_hetero_topology()
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test_batching_hetero_and_batched_hetero_topology()
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test_batched_features()
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