项目文件夹

文件
Mufei Li ead64de98e [Hetero] Batching/Unbatching DGLHeteroGraph (#1017)
* Update

* Update

* Update

* Fix

* CI style fix

* CI fix style

* Fix

* Try CI

* Fix test

* Update

* Update

* Update

* Update
2019-11-26 14:40:50 +08:00

213 行
8.7 KiB
Python

import dgl
import backend as F
from dgl.base import ALL
def check_equivalence_between_heterographs(g1, g2, node_attrs=None, edge_attrs=None):
assert g1.ntypes == g2.ntypes
assert g1.etypes == g2.etypes
assert g1.canonical_etypes == g2.canonical_etypes
for nty in g1.ntypes:
assert g1.number_of_nodes(nty) == g2.number_of_nodes(nty)
for ety in g1.etypes:
if len(g1._etype2canonical[ety]) > 0:
assert g1.number_of_edges(ety) == g2.number_of_edges(ety)
for ety in g1.canonical_etypes:
assert g1.number_of_edges(ety) == g2.number_of_edges(ety)
src1, dst1 = g1.all_edges(etype=ety)
src2, dst2 = g2.all_edges(etype=ety)
assert F.allclose(src1, src2)
assert F.allclose(dst1, dst2)
if node_attrs is not None:
for nty in node_attrs.keys():
for feat_name in node_attrs[nty]:
assert F.allclose(g1.nodes[nty].data[feat_name], g2.nodes[nty].data[feat_name])
if edge_attrs is not None:
for ety in edge_attrs.keys():
for feat_name in edge_attrs[ety]:
assert F.allclose(g1.edges[ety].data[feat_name], g2.edges[ety].data[feat_name])
def test_batching_hetero_topology():
"""Test batching two DGLHeteroGraphs where some nodes are isolated in some relations"""
g1 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'follows', 'developer'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0), (2, 1), (3, 1)]
})
g2 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'follows', 'developer'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0), (2, 1)]
})
bg = dgl.batch_hetero([g1, g2])
assert bg.ntypes == g2.ntypes
assert bg.etypes == g2.etypes
assert bg.canonical_etypes == g2.canonical_etypes
assert bg.batch_size == 2
# Test number of nodes
for ntype in bg.ntypes:
assert bg.batch_num_nodes(ntype) == [
g1.number_of_nodes(ntype), g2.number_of_nodes(ntype)]
assert bg.number_of_nodes(ntype) == (
g1.number_of_nodes(ntype) + g2.number_of_nodes(ntype))
# Test number of edges
assert bg.batch_num_edges('plays') == [
g1.number_of_edges('plays'), g2.number_of_edges('plays')]
assert bg.number_of_edges('plays') == (
g1.number_of_edges('plays') + g2.number_of_edges('plays'))
for etype in bg.canonical_etypes:
assert bg.batch_num_edges(etype) == [
g1.number_of_edges(etype), g2.number_of_edges(etype)]
assert bg.number_of_edges(etype) == (
g1.number_of_edges(etype) + g2.number_of_edges(etype))
# Test relabeled nodes
for ntype in bg.ntypes:
assert list(F.asnumpy(bg.nodes(ntype))) == list(range(bg.number_of_nodes(ntype)))
# Test relabeled edges
src, dst = bg.all_edges(etype=('user', 'follows', 'user'))
assert list(F.asnumpy(src)) == [0, 1, 4, 5]
assert list(F.asnumpy(dst)) == [1, 2, 5, 6]
src, dst = bg.all_edges(etype=('user', 'follows', 'developer'))
assert list(F.asnumpy(src)) == [0, 1, 4, 5]
assert list(F.asnumpy(dst)) == [1, 2, 4, 5]
src, dst = bg.all_edges(etype='plays')
assert list(F.asnumpy(src)) == [0, 1, 2, 3, 4, 5, 6]
assert list(F.asnumpy(dst)) == [0, 0, 1, 1, 2, 2, 3]
# Test unbatching graphs
g3, g4 = dgl.unbatch_hetero(bg)
check_equivalence_between_heterographs(g1, g3)
check_equivalence_between_heterographs(g2, g4)
def test_batching_hetero_and_batched_hetero_topology():
"""Test batching a DGLHeteroGraph and a BatchedDGLHeteroGraph."""
g1 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0)]
})
g2 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0)]
})
bg1 = dgl.batch_hetero([g1, g2])
g3 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1)],
('user', 'plays', 'game'): [(1, 0)]
})
bg2 = dgl.batch_hetero([bg1, g3])
assert bg2.ntypes == g3.ntypes
assert bg2.etypes == g3.etypes
assert bg2.canonical_etypes == g3.canonical_etypes
assert bg2.batch_size == 3
# Test number of nodes
for ntype in bg2.ntypes:
assert bg2.batch_num_nodes(ntype) == [
g1.number_of_nodes(ntype), g2.number_of_nodes(ntype), g3.number_of_nodes(ntype)]
assert bg2.number_of_nodes(ntype) == (
g1.number_of_nodes(ntype) + g2.number_of_nodes(ntype) + g3.number_of_nodes(ntype))
# Test number of edges
for etype in bg2.etypes:
assert bg2.batch_num_edges(etype) == [
g1.number_of_edges(etype), g2.number_of_edges(etype), g3.number_of_edges(etype)]
assert bg2.number_of_edges(etype) == (
g1.number_of_edges(etype) + g2.number_of_edges(etype) + g3.number_of_edges(etype))
for etype in bg2.canonical_etypes:
assert bg2.batch_num_edges(etype) == [
g1.number_of_edges(etype), g2.number_of_edges(etype), g3.number_of_edges(etype)]
assert bg2.number_of_edges(etype) == (
g1.number_of_edges(etype) + g2.number_of_edges(etype) + g3.number_of_edges(etype))
# Test relabeled nodes
for ntype in bg2.ntypes:
assert list(F.asnumpy(bg2.nodes(ntype))) == list(range(bg2.number_of_nodes(ntype)))
# Test relabeled edges
src, dst = bg2.all_edges(etype='follows')
assert list(F.asnumpy(src)) == [0, 1, 3, 4, 6]
assert list(F.asnumpy(dst)) == [1, 2, 4, 5, 7]
src, dst = bg2.all_edges(etype='plays')
assert list(F.asnumpy(src)) == [0, 1, 3, 4, 7]
assert list(F.asnumpy(dst)) == [0, 0, 1, 1, 2]
# Test unbatching graphs
g4, g5, g6 = dgl.unbatch_hetero(bg2)
check_equivalence_between_heterographs(g1, g4)
check_equivalence_between_heterographs(g2, g5)
check_equivalence_between_heterographs(g3, g6)
def test_batched_features():
"""Test the features of batched DGLHeteroGraphs"""
g1 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0)]
})
g1.nodes['user'].data['h1'] = F.tensor([[0.], [1.], [2.]])
g1.nodes['user'].data['h2'] = F.tensor([[3.], [4.], [5.]])
g1.nodes['game'].data['h1'] = F.tensor([[0.]])
g1.nodes['game'].data['h2'] = F.tensor([[1.]])
g1.edges['follows'].data['h1'] = F.tensor([[0.], [1.]])
g1.edges['follows'].data['h2'] = F.tensor([[2.], [3.]])
g1.edges['plays'].data['h1'] = F.tensor([[0.], [1.]])
g2 = dgl.heterograph({
('user', 'follows', 'user'): [(0, 1), (1, 2)],
('user', 'plays', 'game'): [(0, 0), (1, 0)]
})
g2.nodes['user'].data['h1'] = F.tensor([[0.], [1.], [2.]])
g2.nodes['user'].data['h2'] = F.tensor([[3.], [4.], [5.]])
g2.nodes['game'].data['h1'] = F.tensor([[0.]])
g2.nodes['game'].data['h2'] = F.tensor([[1.]])
g2.edges['follows'].data['h1'] = F.tensor([[0.], [1.]])
g2.edges['follows'].data['h2'] = F.tensor([[2.], [3.]])
g2.edges['plays'].data['h1'] = F.tensor([[0.], [1.]])
bg = dgl.batch_hetero([g1, g2],
node_attrs=ALL,
edge_attrs={
('user', 'follows', 'user'): 'h1',
('user', 'plays', 'game'): None
})
assert F.allclose(bg.nodes['user'].data['h1'],
F.cat([g1.nodes['user'].data['h1'], g2.nodes['user'].data['h1']], dim=0))
assert F.allclose(bg.nodes['user'].data['h2'],
F.cat([g1.nodes['user'].data['h2'], g2.nodes['user'].data['h2']], dim=0))
assert F.allclose(bg.nodes['game'].data['h1'],
F.cat([g1.nodes['game'].data['h1'], g2.nodes['game'].data['h1']], dim=0))
assert F.allclose(bg.nodes['game'].data['h2'],
F.cat([g1.nodes['game'].data['h2'], g2.nodes['game'].data['h2']], dim=0))
assert F.allclose(bg.edges['follows'].data['h1'],
F.cat([g1.edges['follows'].data['h1'], g2.edges['follows'].data['h1']], dim=0))
assert 'h2' not in bg.edges['follows'].data.keys()
assert 'h1' not in bg.edges['plays'].data.keys()
# Test unbatching graphs
g3, g4 = dgl.unbatch_hetero(bg)
check_equivalence_between_heterographs(
g1, g3,
node_attrs={'user': ['h1', 'h2'], 'game': ['h1', 'h2']},
edge_attrs={('user', 'follows', 'user'): ['h1']})
check_equivalence_between_heterographs(
g2, g4,
node_attrs={'user': ['h1', 'h2'], 'game': ['h1', 'h2']},
edge_attrs={('user', 'follows', 'user'): ['h1']})
if __name__ == '__main__':
test_batching_hetero_topology()
test_batching_hetero_and_batched_hetero_topology()
test_batched_features()