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Quan (Andy) Gan 4af02022b2 [Bug] Multiple fixes (#1374)
* multiple fixes

* lint

* lint x2
2020-03-19 11:19:44 +08:00

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6.3 KiB
Python

"""Torch modules for graph related softmax."""
# pylint: disable= no-member, arguments-differ
import torch as th
from ...function import TargetCode
from ...base import ALL, is_all
from ... import backend as F
from ... import utils
from ...graph import DGLGraph
from ...heterograph import DGLHeteroGraph
__all__ = ['edge_softmax']
class EdgeSoftmax(th.autograd.Function):
r"""Apply softmax over signals of incoming edges.
For a node :math:`i`, edgesoftmax is an operation of computing
.. math::
a_{ij} = \frac{\exp(z_{ij})}{\sum_{j\in\mathcal{N}(i)}\exp(z_{ij})}
where :math:`z_{ij}` is a signal of edge :math:`j\rightarrow i`, also
called logits in the context of softmax. :math:`\mathcal{N}(i)` is
the set of nodes that have an edge to :math:`i`.
An example of using edgesoftmax is in
`Graph Attention Network <https://arxiv.org/pdf/1710.10903.pdf>`__ where
the attention weights are computed with such an edgesoftmax operation.
"""
@staticmethod
def forward(ctx, g, score, eids):
"""Forward function.
Pseudo-code:
.. code:: python
score = dgl.EData(g, score)
score_max = score.dst_max() # of type dgl.NData
score = score - score_max # edge_sub_dst, ret dgl.EData
score_sum = score.dst_sum() # of type dgl.NData
out = score / score_sum # edge_div_dst, ret dgl.EData
return out.data
"""
# remember to save the graph to backward cache before making it
# a local variable
if not is_all(eids):
g = g.edge_subgraph(eids.long())
n_nodes = g.number_of_dst_nodes()
n_edges = g.number_of_edges()
# TODO(BarclayII): this is a temporary fix of memory leakage in PyTorch
# in PR #1139. We should investigate further on what was actually happening
# when implementing EdgeSoftmax with message passing API instead of
# operators.
score_context = utils.to_dgl_context(score.device)
if isinstance(g, DGLGraph):
gidx = g._graph.get_immutable_gidx(score_context)
elif isinstance(g, DGLHeteroGraph):
assert g._graph.number_of_etypes() == 1, \
"EdgeSoftmax only support one edge type"
gidx = g._graph.get_unitgraph(0, score_context)
ctx.backward_cache = n_nodes, n_edges, gidx
#g.update_all(fn.copy_e('s', 'm'), fn.max('m', 'smax'))
smax = F.copy_reduce('max', gidx, TargetCode.EDGE, score, n_nodes)
#g.apply_edges(fn.e_sub_v('s', 'smax', 'out'))
out = F.binary_reduce(
'none', 'sub', gidx, TargetCode.EDGE, TargetCode.DST, score, smax, n_edges)
#g.edata['out'] = th.exp(g.edata['out'])
out = th.exp(out)
#g.update_all(fn.copy_e('out', 'm'), fn.sum('m', 'out_sum'))
out_sum = F.copy_reduce('sum', gidx, TargetCode.EDGE, out, n_nodes)
#g.apply_edges(fn.e_div_v('out', 'out_sum', 'out'))
out = F.binary_reduce(
'none', 'div', gidx, TargetCode.EDGE, TargetCode.DST, out, out_sum, n_edges)
ctx.save_for_backward(out)
return out
@staticmethod
def backward(ctx, grad_out):
"""Backward function.
Pseudo-code:
.. code:: python
g, out = ctx.backward_cache
grad_out = dgl.EData(g, grad_out)
out = dgl.EData(g, out)
sds = out * grad_out # type dgl.EData
sds_sum = sds.dst_sum() # type dgl.NData
grad_score = sds - sds * sds_sum # multiple expressions
return grad_score.data
"""
n_nodes, n_edges, gidx = ctx.backward_cache
out, = ctx.saved_tensors
#g.edata['grad_s'] = out * grad_out
grad_s = out * grad_out
#g.update_all(fn.copy_e('grad_s', 'm'), fn.sum('m', 'accum'))
accum = F.copy_reduce('sum', gidx, TargetCode.EDGE, grad_s, n_nodes)
#g.apply_edges(fn.e_mul_v('out', 'accum', 'out'))
out = F.binary_reduce(
'none', 'mul', gidx, TargetCode.EDGE, TargetCode.DST, out, accum, n_edges)
#grad_score = g.edata['grad_s'] - g.edata['out']
grad_score = grad_s - out
return None, grad_score, None
def edge_softmax(graph, logits, eids=ALL):
r"""Compute edge softmax.
For a node :math:`i`, edge softmax is an operation of computing
.. math::
a_{ij} = \frac{\exp(z_{ij})}{\sum_{j\in\mathcal{N}(i)}\exp(z_{ij})}
where :math:`z_{ij}` is a signal of edge :math:`j\rightarrow i`, also
called logits in the context of softmax. :math:`\mathcal{N}(i)` is
the set of nodes that have an edge to :math:`i`.
An example of using edge softmax is in
`Graph Attention Network <https://arxiv.org/pdf/1710.10903.pdf>`__ where
the attention weights are computed with such an edge softmax operation.
Parameters
----------
graph : DGLGraph
The graph to perform edge softmax
logits : torch.Tensor
The input edge feature
eids : torch.Tensor or ALL, optional
Edges on which to apply edge softmax. If ALL, apply edge
softmax on all edges in the graph. Default: ALL.
Returns
-------
Tensor
Softmax value
Notes
-----
* Input shape: :math:`(E, *, 1)` where * means any number of
additional dimensions, :math:`E` equals the length of eids.
If eids is ALL, :math:`E` equals number of edges in the graph.
* Return shape: :math:`(E, *, 1)`
Examples
--------
>>> from dgl.nn.pytorch.softmax import edge_softmax
>>> import dgl
>>> import torch as th
Create a :code:`DGLGraph` object and initialize its edge features.
>>> g = dgl.DGLGraph()
>>> g.add_nodes(3)
>>> g.add_edges([0, 0, 0, 1, 1, 2], [0, 1, 2, 1, 2, 2])
>>> edata = th.ones(6, 1).float()
>>> edata
tensor([[1.],
[1.],
[1.],
[1.],
[1.],
[1.]])
Apply edge softmax on g:
>>> edge_softmax(g, edata)
tensor([[1.0000],
[0.5000],
[0.3333],
[0.5000],
[0.3333],
[0.3333]])
Apply edge softmax on first 4 edges of g:
>>> edge_softmax(g, edata[:4], th.Tensor([0,1,2,3]))
tensor([[1.0000],
[0.5000],
[1.0000],
[0.5000]])
"""
return EdgeSoftmax.apply(graph, logits, eids)