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Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00

132 行
5.0 KiB
Python

"""Torch Module for GMM Conv"""
# pylint: disable= no-member, arguments-differ, invalid-name
import torch as th
from torch import nn
from torch.nn import init
from .... import function as fn
from ..utils import Identity
from ....utils import expand_as_pair
class GMMConv(nn.Module):
r"""The Gaussian Mixture Model Convolution layer from `Geometric Deep
Learning on Graphs and Manifolds using Mixture Model CNNs
<http://openaccess.thecvf.com/content_cvpr_2017/papers/Monti_Geometric_Deep_Learning_CVPR_2017_paper.pdf>`__.
.. math::
h_i^{l+1} & = \mathrm{aggregate}\left(\left\{\frac{1}{K}
\sum_{k}^{K} w_k(u_{ij}), \forall j\in \mathcal{N}(i)\right\}\right)
w_k(u) & = \exp\left(-\frac{1}{2}(u-\mu_k)^T \Sigma_k^{-1} (u - \mu_k)\right)
Parameters
----------
in_feats : int
Number of input features.
out_feats : int
Number of output features.
dim : int
Dimensionality of pseudo-coordinte.
n_kernels : int
Number of kernels :math:`K`.
aggregator_type : str
Aggregator type (``sum``, ``mean``, ``max``).
residual : bool
If True, use residual connection inside this layer. Default: ``False``.
bias : bool
If True, adds a learnable bias to the output. Default: ``True``.
"""
def __init__(self,
in_feats,
out_feats,
dim,
n_kernels,
aggregator_type='sum',
residual=False,
bias=True):
super(GMMConv, self).__init__()
self._in_src_feats, self._in_dst_feats = expand_as_pair(in_feats)
self._out_feats = out_feats
self._dim = dim
self._n_kernels = n_kernels
if aggregator_type == 'sum':
self._reducer = fn.sum
elif aggregator_type == 'mean':
self._reducer = fn.mean
elif aggregator_type == 'max':
self._reducer = fn.max
else:
raise KeyError("Aggregator type {} not recognized.".format(aggregator_type))
self.mu = nn.Parameter(th.Tensor(n_kernels, dim))
self.inv_sigma = nn.Parameter(th.Tensor(n_kernels, dim))
self.fc = nn.Linear(self._in_src_feats, n_kernels * out_feats, bias=False)
if residual:
if self._in_dst_feats != out_feats:
self.res_fc = nn.Linear(self._in_dst_feats, out_feats, bias=False)
else:
self.res_fc = Identity()
else:
self.register_buffer('res_fc', None)
if bias:
self.bias = nn.Parameter(th.Tensor(out_feats))
else:
self.register_buffer('bias', None)
self.reset_parameters()
def reset_parameters(self):
"""Reinitialize learnable parameters."""
gain = init.calculate_gain('relu')
init.xavier_normal_(self.fc.weight, gain=gain)
if isinstance(self.res_fc, nn.Linear):
init.xavier_normal_(self.res_fc.weight, gain=gain)
init.normal_(self.mu.data, 0, 0.1)
init.constant_(self.inv_sigma.data, 1)
if self.bias is not None:
init.zeros_(self.bias.data)
def forward(self, graph, feat, pseudo):
"""Compute Gaussian Mixture Model Convolution layer.
Parameters
----------
graph : DGLGraph
The graph.
feat : torch.Tensor
If a single tensor is given, the input feature of shape :math:`(N, D_{in})` where
:math:`D_{in}` is size of input feature, :math:`N` is the number of nodes.
If a pair of tensors are given, the pair must contain two tensors of shape
:math:`(N_{in}, D_{in_{src}})` and :math:`(N_{out}, D_{in_{dst}})`.
pseudo : torch.Tensor
The pseudo coordinate tensor of shape :math:`(E, D_{u})` where
:math:`E` is the number of edges of the graph and :math:`D_{u}`
is the dimensionality of pseudo coordinate.
Returns
-------
torch.Tensor
The output feature of shape :math:`(N, D_{out})` where :math:`D_{out}`
is the output feature size.
"""
with graph.local_scope():
feat_src, feat_dst = expand_as_pair(feat)
graph.srcdata['h'] = self.fc(feat_src).view(-1, self._n_kernels, self._out_feats)
E = graph.number_of_edges()
# compute gaussian weight
gaussian = -0.5 * ((pseudo.view(E, 1, self._dim) -
self.mu.view(1, self._n_kernels, self._dim)) ** 2)
gaussian = gaussian * (self.inv_sigma.view(1, self._n_kernels, self._dim) ** 2)
gaussian = th.exp(gaussian.sum(dim=-1, keepdim=True)) # (E, K, 1)
graph.edata['w'] = gaussian
graph.update_all(fn.u_mul_e('h', 'w', 'm'), self._reducer('m', 'h'))
rst = graph.dstdata['h'].sum(1)
# residual connection
if self.res_fc is not None:
rst = rst + self.res_fc(feat_dst)
# bias
if self.bias is not None:
rst = rst + self.bias
return rst