dmlc--dgl
165 行
4.9 KiB
Python
165 行
4.9 KiB
Python
"""Gluon layer for graph related softmax."""
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# pylint: disable= no-member, arguments-differ
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import mxnet as mx
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from ... import function as fn
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from ...base import ALL, is_all
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__all__ = ['edge_softmax']
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class EdgeSoftmax(mx.autograd.Function):
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r"""Apply softmax over signals of incoming edges.
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For a node :math:`i`, edgesoftmax is an operation of computing
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.. math::
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a_{ij} = \frac{\exp(z_{ij})}{\sum_{j\in\mathcal{N}(i)}\exp(z_{ij})}
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where :math:`z_{ij}` is a signal of edge :math:`j\rightarrow i`, also
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called logits in the context of softmax. :math:`\mathcal{N}(i)` is
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the set of nodes that have an edge to :math:`i`.
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An example of using edgesoftmax is in
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`Graph Attention Network <https://arxiv.org/pdf/1710.10903.pdf>`__ where
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the attention weights are computed with such an edgesoftmax operation.
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"""
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def __init__(self, g, eids):
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super(EdgeSoftmax, self).__init__()
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if not is_all(eids):
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g = g.edge_subgraph(eids.astype('int64'))
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self.g = g
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def forward(self, score):
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"""Forward function.
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Pseudo-code:
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.. code:: python
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score = dgl.EData(g, score)
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score_max = score.dst_max() # of type dgl.NData
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score = score - score_max # edge_sub_dst, ret dgl.EData
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score_sum = score.dst_sum() # of type dgl.NData
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out = score / score_sum # edge_div_dst, ret dgl.EData
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return out.data
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"""
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g = self.g.local_var()
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g.edata['s'] = score
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g.update_all(fn.copy_e('s', 'm'), fn.max('m', 'smax'))
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g.apply_edges(fn.e_sub_v('s', 'smax', 'out'))
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g.edata['out'] = g.edata['out'].exp()
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g.update_all(fn.copy_e('out', 'm'), fn.sum('m', 'out_sum'))
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g.apply_edges(fn.e_div_v('out', 'out_sum', 'out'))
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out = g.edata['out']
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self.save_for_backward(out)
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return out
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def backward(self, grad_out):
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"""Backward function.
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Pseudo-code:
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.. code:: python
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g, out = ctx.backward_cache
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grad_out = dgl.EData(g, grad_out)
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out = dgl.EData(g, out)
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sds = out * grad_out # type dgl.EData
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sds_sum = sds.dst_sum() # type dgl.NData
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grad_score = sds - sds * sds_sum # multiple expressions
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"""
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g = self.g.local_var()
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out, = self.saved_tensors # pylint: disable=access-member-before-definition, unpacking-non-sequence
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# clear saved tensors explicitly
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self.saved_tensors = None
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g.edata['out'] = out
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g.edata['grad_score'] = out * grad_out
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g.update_all(fn.copy_e('grad_score', 'm'), fn.sum('m', 'accum'))
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g.apply_edges(fn.e_mul_v('out', 'accum', 'out'))
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grad_score = g.edata['grad_score'] - g.edata['out']
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return grad_score
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def edge_softmax(graph, logits, eids=ALL):
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r"""Compute edge softmax.
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For a node :math:`i`, edge softmax is an operation of computing
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.. math::
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a_{ij} = \frac{\exp(z_{ij})}{\sum_{j\in\mathcal{N}(i)}\exp(z_{ij})}
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where :math:`z_{ij}` is a signal of edge :math:`j\rightarrow i`, also
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called logits in the context of softmax. :math:`\mathcal{N}(i)` is
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the set of nodes that have an edge to :math:`i`.
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An example of using edge softmax is in
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`Graph Attention Network <https://arxiv.org/pdf/1710.10903.pdf>`__ where
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the attention weights are computed with such an edge softmax operation.
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Parameters
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----------
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graph : DGLGraph
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The graph to perform edge softmax
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logits : mxnet.NDArray
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The input edge feature
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eids : mxnet.NDArray or ALL, optional
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Edges on which to apply edge softmax. If ALL, apply edge softmax
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on all edges in the graph. Default: ALL.
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Returns
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-------
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Tensor
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Softmax value
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Notes
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-----
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* Input shape: :math:`(E, *, 1)` where * means any number of
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additional dimensions, :math:`E` equals the length of eids.
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If eids is ALL, :math:`E` equals number of edges in the graph.
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* Return shape: :math:`(E, *, 1)`
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Examples
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--------
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>>> from dgl.nn.mxnet.softmax import edge_softmax
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>>> import dgl
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>>> from mxnet import nd
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Create a :code:`DGLGraph` object and initialize its edge features.
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>>> g = dgl.DGLGraph()
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>>> g.add_nodes(3)
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>>> g.add_edges([0, 0, 0, 1, 1, 2], [0, 1, 2, 1, 2, 2])
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>>> edata = nd.ones((6, 1))
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>>> edata
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[[1.]
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[1.]
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[1.]
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[1.]
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[1.]
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[1.]]
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<NDArray 6x1 @cpu(0)>
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Apply edge softmax on g:
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>>> edge_softmax(g, edata)
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[[1. ]
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[0.5 ]
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[0.33333334]
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[0.5 ]
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[0.33333334]
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[0.33333334]]
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<NDArray 6x1 @cpu(0)>
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Apply edge softmax on first 4 edges of g:
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>>> edge_softmax(g, edata, nd.array([0,1,2,3], dtype='int64'))
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[[1. ]
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[0.5]
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[1. ]
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[0.5]]
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<NDArray 4x1 @cpu(0)>
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"""
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softmax_op = EdgeSoftmax(graph, eids)
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return softmax_op(logits)
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