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Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00

141 行
5.7 KiB
Python

"""Torch Module for GMM Conv"""
# pylint: disable= no-member, arguments-differ, invalid-name
import math
import mxnet as mx
from mxnet import nd
from mxnet.gluon import nn
from mxnet.gluon.contrib.nn import Identity
from .... import function as fn
from ....utils import expand_as_pair
class GMMConv(nn.Block):
r"""The Gaussian Mixture Model Convolution layer from `Geometric Deep
Learning on Graphs and Manifolds using Mixture Model CNNs
<http://openaccess.thecvf.com/content_cvpr_2017/papers/Monti_Geometric_Deep_Learning_CVPR_2017_paper.pdf>`__.
.. math::
h_i^{l+1} & = \mathrm{aggregate}\left(\left\{\frac{1}{K}
\sum_{k}^{K} w_k(u_{ij}), \forall j\in \mathcal{N}(i)\right\}\right)
w_k(u) & = \exp\left(-\frac{1}{2}(u-\mu_k)^T \Sigma_k^{-1} (u - \mu_k)\right)
Parameters
----------
in_feats : int, or pair of ints
Number of input features.
If the layer is to be applied on a unidirectional bipartite graph, ``in_feats``
specifies the input feature size on both the source and destination nodes. If
a scalar is given, the source and destination node feature size would take the
same value.
out_feats : int
Number of output features.
dim : int
Dimensionality of pseudo-coordinte.
n_kernels : int
Number of kernels :math:`K`.
aggregator_type : str
Aggregator type (``sum``, ``mean``, ``max``). Default: ``sum``.
residual : bool
If True, use residual connection inside this layer. Default: ``False``.
bias : bool
If True, adds a learnable bias to the output. Default: ``True``.
"""
def __init__(self,
in_feats,
out_feats,
dim,
n_kernels,
aggregator_type='sum',
residual=False,
bias=True):
super(GMMConv, self).__init__()
self._in_src_feats, self._in_dst_feats = expand_as_pair(in_feats)
self._out_feats = out_feats
self._dim = dim
self._n_kernels = n_kernels
if aggregator_type == 'sum':
self._reducer = fn.sum
elif aggregator_type == 'mean':
self._reducer = fn.mean
elif aggregator_type == 'max':
self._reducer = fn.max
else:
raise KeyError("Aggregator type {} not recognized.".format(aggregator_type))
with self.name_scope():
self.mu = self.params.get('mu',
shape=(n_kernels, dim),
init=mx.init.Normal(0.1))
self.inv_sigma = self.params.get('inv_sigma',
shape=(n_kernels, dim),
init=mx.init.Constant(1))
self.fc = nn.Dense(n_kernels * out_feats,
in_units=self._in_src_feats,
use_bias=False,
weight_initializer=mx.init.Xavier(magnitude=math.sqrt(2.0)))
if residual:
if self._in_dst_feats != out_feats:
self.res_fc = nn.Dense(out_feats, in_units=self._in_dst_feats, use_bias=False)
else:
self.res_fc = Identity()
else:
self.res_fc = None
if bias:
self.bias = self.params.get('bias',
shape=(out_feats,),
init=mx.init.Zero())
else:
self.bias = None
def forward(self, graph, feat, pseudo):
"""Compute Gaussian Mixture Model Convolution layer.
Parameters
----------
graph : DGLGraph
The graph.
feat : mxnet.NDArray
If a single tensor is given, the input feature of shape :math:`(N, D_{in})` where
:math:`D_{in}` is size of input feature, :math:`N` is the number of nodes.
If a pair of tensors are given, the pair must contain two tensors of shape
:math:`(N_{in}, D_{in_{src}})` and :math:`(N_{out}, D_{in_{dst}})`.
pseudo : mxnet.NDArray
The pseudo coordinate tensor of shape :math:`(E, D_{u})` where
:math:`E` is the number of edges of the graph and :math:`D_{u}`
is the dimensionality of pseudo coordinate.
Returns
-------
mxnet.NDArray
The output feature of shape :math:`(N, D_{out})` where :math:`D_{out}`
is the output feature size.
"""
feat_src, feat_dst = expand_as_pair(feat)
with graph.local_scope():
graph.srcdata['h'] = self.fc(feat_src).reshape(
-1, self._n_kernels, self._out_feats)
E = graph.number_of_edges()
# compute gaussian weight
gaussian = -0.5 * ((pseudo.reshape(E, 1, self._dim) -
self.mu.data(feat_src.context)
.reshape(1, self._n_kernels, self._dim)) ** 2)
gaussian = gaussian *\
(self.inv_sigma.data(feat_src.context)
.reshape(1, self._n_kernels, self._dim) ** 2)
gaussian = nd.exp(gaussian.sum(axis=-1, keepdims=True)) # (E, K, 1)
graph.edata['w'] = gaussian
graph.update_all(fn.u_mul_e('h', 'w', 'm'), self._reducer('m', 'h'))
rst = graph.dstdata['h'].sum(1)
# residual connection
if self.res_fc is not None:
rst = rst + self.res_fc(feat_dst)
# bias
if self.bias is not None:
rst = rst + self.bias.data(feat_dst.context)
return rst