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Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00

98 行
3.4 KiB
Python

"""MXNet Module for Gated Graph Convolution layer"""
# pylint: disable= no-member, arguments-differ, invalid-name, cell-var-from-loop
import mxnet as mx
from mxnet import gluon, nd
from mxnet.gluon import nn
from .... import function as fn
class GatedGraphConv(nn.Block):
r"""Gated Graph Convolution layer from paper `Gated Graph Sequence
Neural Networks <https://arxiv.org/pdf/1511.05493.pdf>`__.
.. math::
h_{i}^{0} & = [ x_i \| \mathbf{0} ]
a_{i}^{t} & = \sum_{j\in\mathcal{N}(i)} W_{e_{ij}} h_{j}^{t}
h_{i}^{t+1} & = \mathrm{GRU}(a_{i}^{t}, h_{i}^{t})
Parameters
----------
in_feats : int
Input feature size.
out_feats : int
Output feature size.
n_steps : int
Number of recurrent steps.
n_etypes : int
Number of edge types.
bias : bool
If True, adds a learnable bias to the output. Default: ``True``.
Can only be set to True in MXNet.
"""
def __init__(self,
in_feats,
out_feats,
n_steps,
n_etypes,
bias=True):
super(GatedGraphConv, self).__init__()
self._in_feats = in_feats
self._out_feats = out_feats
self._n_steps = n_steps
self._n_etypes = n_etypes
if not bias:
raise KeyError('MXNet do not support disabling bias in GRUCell.')
with self.name_scope():
self.linears = nn.Sequential()
for _ in range(n_etypes):
self.linears.add(
nn.Dense(out_feats,
weight_initializer=mx.init.Xavier(),
in_units=out_feats)
)
self.gru = gluon.rnn.GRUCell(out_feats, input_size=out_feats)
def forward(self, graph, feat, etypes):
"""Compute Gated Graph Convolution layer.
Parameters
----------
graph : DGLGraph
The graph.
feat : mxnet.NDArray
The input feature of shape :math:`(N, D_{in})` where :math:`N`
is the number of nodes of the graph and :math:`D_{in}` is the
input feature size.
etypes : torch.LongTensor
The edge type tensor of shape :math:`(E,)` where :math:`E` is
the number of edges of the graph.
Returns
-------
mxnet.NDArray
The output feature of shape :math:`(N, D_{out})` where :math:`D_{out}`
is the output feature size.
"""
assert graph.is_homograph(), \
"not a homograph; convert it with to_homo and pass in the edge type as argument"
graph = graph.local_var()
zero_pad = nd.zeros((feat.shape[0], self._out_feats - feat.shape[1]), ctx=feat.context)
feat = nd.concat(feat, zero_pad, dim=-1)
for _ in range(self._n_steps):
graph.ndata['h'] = feat
for i in range(self._n_etypes):
eids = (etypes.asnumpy() == i).nonzero()[0]
eids = nd.from_numpy(eids, zero_copy=True)
if len(eids) > 0:
graph.apply_edges(
lambda edges: {'W_e*h': self.linears[i](edges.src['h'])},
eids
)
graph.update_all(fn.copy_e('W_e*h', 'm'), fn.sum('m', 'a'))
a = graph.ndata.pop('a')
feat = self.gru(a, [feat])[0]
return feat