dmlc--dgl
16061925d5
* nonuniform sampler * unit test * test on out neighbors * error checks * lint * fix * clarification * use macro switcher * use empty array for uniform sampling * oops * Revert "oops" This reverts commit a11f9ae707aaeb67fb5921c887a17d3711d5b04a. * Revert "use empty array for uniform sampling" This reverts commit 8526ce4cade89f2c1b09a08aca8830375ebafb31. * re-reverting * use a method
141 行
5.0 KiB
C++
141 行
5.0 KiB
C++
/*!
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* Copyright (c) 2018 by Contributors
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* \file dgl/sampler.h
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* \brief DGL sampler header.
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*/
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#ifndef DGL_SAMPLER_H_
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#define DGL_SAMPLER_H_
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#include <vector>
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#include <string>
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#include <cstdlib>
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#include <ctime>
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#include "graph_interface.h"
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#include "nodeflow.h"
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namespace dgl {
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class ImmutableGraph;
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struct RandomWalkTraces {
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/*! \brief number of traces generated for each seed */
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IdArray trace_counts;
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/*! \brief length of each trace, concatenated */
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IdArray trace_lengths;
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/*! \brief the vertices, concatenated */
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IdArray vertices;
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};
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class SamplerOp {
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public:
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/*!
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* \brief Sample a graph from the seed vertices with neighbor sampling.
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* The neighbors are sampled with a uniform distribution.
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*
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* \param graphs A graph for sampling.
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* \param seeds the nodes where we should start to sample.
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* \param edge_type the type of edges we should sample neighbors.
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* \param num_hops the number of hops to sample neighbors.
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* \param expand_factor the max number of neighbors to sample.
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* \param add_self_loop whether to add self loop to the sampled subgraph
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* \param probability the transition probability (float/double).
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* \return a NodeFlow graph.
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*/
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template<typename ValueType>
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static NodeFlow NeighborSample(const ImmutableGraph *graph,
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const std::vector<dgl_id_t>& seeds,
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const std::string &edge_type,
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int num_hops, int expand_factor,
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const bool add_self_loop,
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const ValueType *probability);
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/*!
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* \brief Sample a graph from the seed vertices with layer sampling.
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* The layers are sampled with a uniform distribution.
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*
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* \param graphs A graph for sampling.
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* \param seeds the nodes where we should start to sample.
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* \param edge_type the type of edges we should sample neighbors.
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* \param layer_sizes The size of layers.
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* \return a NodeFlow graph.
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*/
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static NodeFlow LayerUniformSample(const ImmutableGraph *graph,
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const std::vector<dgl_id_t>& seeds,
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const std::string &neigh_type,
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IdArray layer_sizes);
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};
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/*!
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* \brief Batch-generate random walk traces
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* \param seeds The array of starting vertex IDs
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* \param num_traces The number of traces to generate for each seed
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* \param num_hops The number of hops for each trace
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* \return a flat ID array with shape (num_seeds, num_traces, num_hops + 1)
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*/
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IdArray RandomWalk(const GraphInterface *gptr,
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IdArray seeds,
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int num_traces,
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int num_hops);
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/*!
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* \brief Batch-generate random walk traces with restart
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*
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* Stop generating traces if max_frequrent_visited_nodes nodes are visited more than
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* max_visit_counts times.
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*
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* \param seeds The array of starting vertex IDs
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* \param restart_prob The restart probability
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* \param visit_threshold_per_seed Stop generating more traces once the number of nodes
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* visited for a seed exceeds this number. (Algorithm 1 in [1])
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* \param max_visit_counts Alternatively, stop generating traces for a seed if no less
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* than \c max_frequent_visited_nodes are visited no less than \c max_visit_counts
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* times. (Algorithm 2 in [1])
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* \param max_frequent_visited_nodes See \c max_visit_counts
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* \return A RandomWalkTraces instance.
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*
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* \sa [1] Eksombatchai et al., 2017 https://arxiv.org/abs/1711.07601
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*/
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RandomWalkTraces RandomWalkWithRestart(
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const GraphInterface *gptr,
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IdArray seeds,
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double restart_prob,
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uint64_t visit_threshold_per_seed,
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uint64_t max_visit_counts,
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uint64_t max_frequent_visited_nodes);
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/*
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* \brief Batch-generate random walk traces with restart on a bipartite graph, walking two
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* hops at a time.
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*
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* Since it is walking on a bipartite graph, the vertices of a trace will always stay on the
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* same side.
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*
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* Stop generating traces if max_frequrent_visited_nodes nodes are visited more than
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* max_visit_counts times.
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*
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* \param seeds The array of starting vertex IDs
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* \param restart_prob The restart probability
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* \param visit_threshold_per_seed Stop generating more traces once the number of nodes
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* visited for a seed exceeds this number. (Algorithm 1 in [1])
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* \param max_visit_counts Alternatively, stop generating traces for a seed if no less
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* than \c max_frequent_visited_nodes are visited no less than \c max_visit_counts
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* times. (Algorithm 2 in [1])
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* \param max_frequent_visited_nodes See \c max_visit_counts
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* \return A RandomWalkTraces instance.
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*
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* \note Doesn't verify whether the graph is indeed a bipartite graph
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*
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* \sa [1] Eksombatchai et al., 2017 https://arxiv.org/abs/1711.07601
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*/
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RandomWalkTraces BipartiteSingleSidedRandomWalkWithRestart(
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const GraphInterface *gptr,
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IdArray seeds,
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double restart_prob,
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uint64_t visit_threshold_per_seed,
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uint64_t max_visit_counts,
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uint64_t max_frequent_visited_nodes);
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} // namespace dgl
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#endif // DGL_SAMPLER_H_
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