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Quan (Andy) Gan 16061925d5 [NodeFlow] Non-uniform neighbor sampling (#711)
* nonuniform sampler

* unit test

* test on out neighbors

* error checks

* lint

* fix

* clarification

* use macro switcher

* use empty array for uniform sampling

* oops

* Revert "oops"

This reverts commit a11f9ae707aaeb67fb5921c887a17d3711d5b04a.

* Revert "use empty array for uniform sampling"

This reverts commit 8526ce4cade89f2c1b09a08aca8830375ebafb31.

* re-reverting

* use a method
2019-08-07 09:42:08 +08:00

141 行
5.0 KiB
C++

/*!
* Copyright (c) 2018 by Contributors
* \file dgl/sampler.h
* \brief DGL sampler header.
*/
#ifndef DGL_SAMPLER_H_
#define DGL_SAMPLER_H_
#include <vector>
#include <string>
#include <cstdlib>
#include <ctime>
#include "graph_interface.h"
#include "nodeflow.h"
namespace dgl {
class ImmutableGraph;
struct RandomWalkTraces {
/*! \brief number of traces generated for each seed */
IdArray trace_counts;
/*! \brief length of each trace, concatenated */
IdArray trace_lengths;
/*! \brief the vertices, concatenated */
IdArray vertices;
};
class SamplerOp {
public:
/*!
* \brief Sample a graph from the seed vertices with neighbor sampling.
* The neighbors are sampled with a uniform distribution.
*
* \param graphs A graph for sampling.
* \param seeds the nodes where we should start to sample.
* \param edge_type the type of edges we should sample neighbors.
* \param num_hops the number of hops to sample neighbors.
* \param expand_factor the max number of neighbors to sample.
* \param add_self_loop whether to add self loop to the sampled subgraph
* \param probability the transition probability (float/double).
* \return a NodeFlow graph.
*/
template<typename ValueType>
static NodeFlow NeighborSample(const ImmutableGraph *graph,
const std::vector<dgl_id_t>& seeds,
const std::string &edge_type,
int num_hops, int expand_factor,
const bool add_self_loop,
const ValueType *probability);
/*!
* \brief Sample a graph from the seed vertices with layer sampling.
* The layers are sampled with a uniform distribution.
*
* \param graphs A graph for sampling.
* \param seeds the nodes where we should start to sample.
* \param edge_type the type of edges we should sample neighbors.
* \param layer_sizes The size of layers.
* \return a NodeFlow graph.
*/
static NodeFlow LayerUniformSample(const ImmutableGraph *graph,
const std::vector<dgl_id_t>& seeds,
const std::string &neigh_type,
IdArray layer_sizes);
};
/*!
* \brief Batch-generate random walk traces
* \param seeds The array of starting vertex IDs
* \param num_traces The number of traces to generate for each seed
* \param num_hops The number of hops for each trace
* \return a flat ID array with shape (num_seeds, num_traces, num_hops + 1)
*/
IdArray RandomWalk(const GraphInterface *gptr,
IdArray seeds,
int num_traces,
int num_hops);
/*!
* \brief Batch-generate random walk traces with restart
*
* Stop generating traces if max_frequrent_visited_nodes nodes are visited more than
* max_visit_counts times.
*
* \param seeds The array of starting vertex IDs
* \param restart_prob The restart probability
* \param visit_threshold_per_seed Stop generating more traces once the number of nodes
* visited for a seed exceeds this number. (Algorithm 1 in [1])
* \param max_visit_counts Alternatively, stop generating traces for a seed if no less
* than \c max_frequent_visited_nodes are visited no less than \c max_visit_counts
* times. (Algorithm 2 in [1])
* \param max_frequent_visited_nodes See \c max_visit_counts
* \return A RandomWalkTraces instance.
*
* \sa [1] Eksombatchai et al., 2017 https://arxiv.org/abs/1711.07601
*/
RandomWalkTraces RandomWalkWithRestart(
const GraphInterface *gptr,
IdArray seeds,
double restart_prob,
uint64_t visit_threshold_per_seed,
uint64_t max_visit_counts,
uint64_t max_frequent_visited_nodes);
/*
* \brief Batch-generate random walk traces with restart on a bipartite graph, walking two
* hops at a time.
*
* Since it is walking on a bipartite graph, the vertices of a trace will always stay on the
* same side.
*
* Stop generating traces if max_frequrent_visited_nodes nodes are visited more than
* max_visit_counts times.
*
* \param seeds The array of starting vertex IDs
* \param restart_prob The restart probability
* \param visit_threshold_per_seed Stop generating more traces once the number of nodes
* visited for a seed exceeds this number. (Algorithm 1 in [1])
* \param max_visit_counts Alternatively, stop generating traces for a seed if no less
* than \c max_frequent_visited_nodes are visited no less than \c max_visit_counts
* times. (Algorithm 2 in [1])
* \param max_frequent_visited_nodes See \c max_visit_counts
* \return A RandomWalkTraces instance.
*
* \note Doesn't verify whether the graph is indeed a bipartite graph
*
* \sa [1] Eksombatchai et al., 2017 https://arxiv.org/abs/1711.07601
*/
RandomWalkTraces BipartiteSingleSidedRandomWalkWithRestart(
const GraphInterface *gptr,
IdArray seeds,
double restart_prob,
uint64_t visit_threshold_per_seed,
uint64_t max_visit_counts,
uint64_t max_frequent_visited_nodes);
} // namespace dgl
#endif // DGL_SAMPLER_H_