e16e895d53
[Doc] fix some document warnings ( #645 )
...
* fix doc
* fix some format and warnings
* fix
2019-06-11 13:41:41 -04:00
463807c511
[Doc] indexing missing docs. ( #625 )
...
* add doc of NodeFlow.
* add missing API in nodeflow.
* add docs and two more API to NodeFlow.
* add more docs.
* fix.
* fix.
* fix.
* add docs for distributed sampler.
2019-06-10 18:11:36 -07:00
ebbb6296f9
[Doc] doc page for builtin functions ( #642 )
...
* doc page for builtin functions; install from source doc
* upload rst
* update
2019-06-10 18:29:28 -04:00
fb9dcc51ff
[Feature] Add API to convert graph to bidirected graph ( #598 )
...
* to_bidirected
* to_bidirected
* Fix style
* Fix
* Update
* Fix
* Fix
* Update
* Add examples
2019-06-10 14:02:29 +08:00
993fd3f94b
[Enhancement] Add DGLGraph.to for PyTorch and MXNet backend ( #600 )
...
* add graph_to
* use backend copy_to
* add test
* fix test
* framework agnostic to() test
* disable pylint complaint
* add examples
* fix docstring
* formatting
* Format
* Update test_to_device.py
2019-06-08 16:21:29 +08:00
baa16231f3
[Feature] Remove nodes/edges. ( #599 )
...
* upd
* upd
* reformat
* upd
* upd
* add test
* fix arange
* fix slight bug
* upd
* trigger
* upd docs
* upd
* upd
* upd
* change subgraph to be raw data wrapper
* upd
* fix test
2019-06-08 13:44:36 +08:00
acefb9a9f0
[BUGFIX] fix the problems in the sampling tutorial. ( #523 )
...
* add index.
* update.
* update tutorial.
2019-05-07 18:19:07 -07:00
a3febc061b
[Model] Add GIN Model ( #471 )
...
* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
00fc680aae
[Dataset] Add TUDataset ( #473 )
...
* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
9b4fb2fb32
[Doc]Fix 'git remote' command in contribution doc ( #470 )
...
* fix docs remote instead of remove
* Update CONTRIBUTORS.md
2019-04-01 09:05:17 +08:00
d1d580ecc1
[feature & bugfix] adjacency_matrix_scipy, wrong order of edges in immutable graph. ( #437 )
...
* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
* fix adj mat
* fix edges() order
* add test
* revert
* upd
* fix
* upd
2019-03-12 23:57:13 -04:00
ca2a7e1ca1
[Refactor] Nodeflow, sampling, CAPI ( #430 )
...
* enable cython
* add helper function and data structure for void_p vector return
* move sampler from graph index to contrib.sampling
* WIP
* WIP
* refactor layer sampling
* pass tests
* fix lint
* fix graphsage
* remove comments
* pickle test
* fix comments
* update dev guide for cython build
2019-03-05 14:07:22 -05:00
a88f351174
[Doc] update doc string ( #426 )
2019-03-02 14:00:52 -05:00
dba2a5b628
[Doc] Add DGLSubGraph, and DGLGraph.readonly() interface to docs ( #421 )
...
* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
2019-03-01 10:10:24 -05:00
565f0c88fc
[WIP] [NN] Refactor NN package ( #406 )
...
* refactor graph conv
* docs & tests
* fix lint
* fix lint
* fix lint
* fix lint script
* fix lint
* Update
* Style fix
* Fix style
* Fix style
* Fix gpu case
* Fix for gpu case
* Hotfix edgesoftmax docs
* Handle repeated features
* Add docstring
* Set default arguments
* Remove dropout from nn.conv
* Fix
* add util fn for renaming
* revert gcn_spmv.py
* mx folder
* fix wierd bug
* fix mx
* fix lint
2019-02-25 18:41:21 -05:00
bd9171d6cd
[Doc Fix] Fix group_apply_edges docs display
2019-02-21 00:19:39 +08:00
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
...
* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
59ec7a9c93
MSBuild instructions ( #393 )
2019-02-14 11:56:32 -05:00
3cbfc25a32
[Tutorial] Batched Graph Classification ( #360 )
...
* batched_graph_classification
* Fix
* Fix
* update tutorial with new dataset
* Final
* Fix doc for dataset
* small fix
2019-01-25 15:13:52 -05:00
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
...
* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
19e1b14031
[Docs] Move file_pattern option from Makefile to conf.py ( #352 )
...
* add rtfd
* rrr
* update
* change env
* temp fix
* update
* fix
* fix
* add
* conf
* Move file_pattern from Makefile to conf.py
* remove yml
* fix
* fix
* fix
* fix
* remove yml
* remove yml
* add doc docker
* add dgl install script
* change name
* change dockerfile
* fix
* name
* add
* fix
* fix
* fix
* fix
* add doc-build files
* remove unnecessary import os
2019-01-12 09:51:50 -05:00
3a868eb04b
[Feature] Max readout and consecutive labeling for networkx ( #341 )
...
* Max readout and consecutive labeling
* Delete test_readout.py
* Delete test_basics.py
* Test case and fix
* Recover accidentally removed file
* Fix import order
* Fix test case
* Fix
* Fix
* Fix
* Fix
* Fix
* revert
* Fix
* Fix
* Fix
2019-01-10 12:58:05 -05:00
192bd952de
[Doc] fix broken link in doc ( #344 )
2019-01-07 17:51:36 -05:00
e19cd62ecd
[Test] Unify tests for different backends ( #333 )
...
* test basics
* batched graph & filter, mxnet filter fix
* frame and function; bugfix
* test graph adj and inc matrices
* fixing start = 0 for mxnet
* test index
* inplace update & line graph
* multi send recv
* more tests
* oops
* more tests
* removing old test files; readonly graphs for mxnet still kept
* modifying test scripts
* adding a placeholder for pytorch to reserve directory
* torch 0.4.1 compat fixes
* moving backend out of compute to avoid nose detection
* tests guide
* mx sparse-to-dense/sparse-to-numpy is buggy
* oops
* contribution guide for unit tests
* printing incmat
* printing dlpack
* small push
* typo
* fixing duplicate entries that causes undefined behavior
* move equal comparison to backend
2019-01-05 23:32:33 -05:00
3edcaa1ed6
[Doc] small fix on the doc ref ( #337 )
2019-01-04 17:10:42 -05:00
6f9ae8d61e
[Doc] main doc page update and contribute guide ( #336 )
...
* reorg the doc mainpage
* contribute guide
2019-01-04 17:02:37 -05:00
24bbdb745e
[Feature] Reversed Graph and Transform Module ( #331 )
...
* reverse a graph
* Reverse a graph
* Fix
* Revert "Fix"
This reverts commit 1728826b4f3a083b76dfc0fdecd2bbf943a971b2.
* Fix
* Fix
* Delete vcs.xml
* Delete Project_Default.xml
* Fix
* Fix
* Fix
* Remove outdated test
* Reorg transform and update reverse (#2 )
* Reorg transform and update reverse
* Fix doc and test
* Update test
* Resolve conflict
* CI oriented fix
* Remove outdated import
* Fix import
* Fix import
* define __all__ for wildcard imports
* Fix import
* Address circular imports
* Fix
* Fix test case
* Fix
* Fix
* Remove unused import
* Fix
* Fix
* Fix
2019-01-04 13:51:19 -05:00
534ea8c970
[Doc] Update index.rst ( #328 )
2018-12-26 19:29:00 -05:00
0cbe521b99
[Doc] Fix document building for multiple tensor backends ( #301 )
...
* remove loading backend in sse
* build mxnet in a second run
* a third run to fix everything
* fix docstring in sampler
* fix docstring in transformer
* README for doc build
* some reordering and printing
* use filename_pattern instead of ignore_pattern to reduce warning at the cost of redundant work...
* add env var to use mxnet in Jenkinsfile
* remove step 3, it's already fixed by previous commit
2018-12-12 11:07:46 -05:00
d10baaeff6
[DOC] Fix repo link ( #295 )
...
* Update index.rst
* Update index.rst
2018-12-11 14:41:15 -05:00
322bd713e4
[Release] 0.1.2: Require Windows 10 ( #277 )
...
* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
* windows 7 -> 10
* doc update
2018-12-07 04:46:21 -05:00
37feb479fd
[Release] 0.1.2 updates ( #276 )
...
* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
2018-12-07 01:54:13 -05:00
7aa494b3bc
[Bugfix][Doc] explain the batch dimension in the doc and many fix ( #266 )
...
* add more unit tests for mxnet.
* fix.
* explain the batch dimension.
* update doc.
* disable unit tests on DFS.
* fix graph traversal.
2018-12-06 00:48:57 -05:00
c620bfc2b7
[Doc] faq & env ( #263 )
...
* faq & env
* add update version script; 0.0.1 -> 0.1.0
2018-12-05 19:18:33 -05:00
a1d50f0f53
[Refactor] Rename before release ( #261 )
...
* include/dgl/runtime
* include
* src/runtime
* src/graph
* src/scheduler
* src
* clean up CMakeLists
* further clean up in cmake
* install commands
* python/dgl/_ffi/_cython
* python/dgl/_ffi/_ctypes
* python/dgl/_ffi
* python/dgl
* some fix
* copy right
2018-12-05 16:45:36 -05:00
aabba9d4d9
[Doc] minor fix in overview ( #256 )
2018-12-05 16:27:52 -05:00
cd907cddfa
[Tutorial] Add sse tutorial & MXNet Tutorial CI ( #252 )
...
* add sse tutorial
* add mxnet tutorial ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix ci
* Fix ci
* Fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix CI
Fix CI image
* permission fix
* fix a bug in the code.
* small fix
* fix doc
* fix ci
* shorten the iters
* fix
* remove extra file
* add load_backend api to dynamically switch to another backend
* try fix
* fix tutorial
* fix tutorial
* fix bug in tutorial
2018-12-05 16:21:44 -05:00
71fa26acac
Fix windows line seprator problems ( #248 )
2018-12-05 15:40:32 +08:00
274e1082f5
[Doc] API doc string for many components ( #245 )
...
* builtin function docstring
* init docstring
* view docstring
* add init to index and fix
* node /edge feature
* Example -> Examples
* fix func hyperlink
* traversal
* fix
* from/to_networkx docstring
* minor
* fix duplicate label
* comment about tensor framework
* from scipy sparse matrix
* fix format errors
2018-12-04 17:52:00 -05:00
7cca500787
[Doc] Computing with DGLGraph ( #212 )
...
* Docs for graph computing
* Docs for graph computing
* Fix
* WIP
* update the docstring
2018-12-04 16:51:46 -05:00
31800e7170
[Doc] Fix typo at doc index ( #241 )
...
Fix typo at doc index
2018-12-04 15:05:37 -05:00
16cc528757
[Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout ( #236 )
...
* improve capsule tutorial with jinyang
* fix wrong layout of second-level tutorial
* delete transformer
2018-12-04 10:46:49 -05:00
10e18ed982
[Doc] overview and others ( #222 )
...
* model tutorials overview
* update the 1_first
* revised overview and summarized "what is DGL" in glance
2018-12-03 17:31:35 -05:00
419ffbded9
[Doc] Installation guide ( #223 )
...
* docstrings for graph mutation & queries
* [Doc] contrib.sampler. (#200 )
* subgraph docs
* updates
* added installation guide
* style fix
* package name fixes
* adding it back...
* fix as requested
* adding link
* mac os build instructions
* OS -> macOS
2018-12-03 14:33:21 -05:00
5680f8dc13
[DOC] Documentation strings for graph mutation, queries, and subgraphing ( #207 )
...
* docstrings for graph mutation & queries
* [Doc] contrib.sampler. (#200 )
* subgraph docs
* updates
2018-12-02 14:41:25 -05:00
5278220f85
update s3 links ( #215 )
2018-12-02 20:48:29 +08:00
3a0f86a663
[Doc] data ( #198 )
...
* Fix dataset
* Track data APIs
2018-11-30 11:40:22 -05:00
485f6d3abd
[Doc] udf ( #195 )
...
* Docstring for udf
* Track udf docs
* Improve
* Improved
* Delete udf.py
* Improve
2018-11-30 00:38:58 -05:00
8dc6784b12
[Doc] docstring for BatchedDGLGraph + some fix ( #184 )
...
* Update doc
* Update batched_graph.py
* Fix
* Fix
* Fix
* Fix
2018-11-29 09:53:16 -05:00
a8fa85c7d5
Conda builds ( #187 )
...
* conda recipe
* switching to source build
* trying windows build
* wip
* windows build works
2018-11-29 02:21:53 -05:00
Minjie Wang