文件历史

17 次代码提交

作者 SHA1 备注 提交日期
Quan (Andy) Gan 75e2af7993 [CI] Jenkins on Windows builds (#324)
* Jenkins build & test on Windows

* oops

* still running nohup on Windows slaves

* ooops again

* squishing vcvars and cmake

* another try

* reverting back

* --user

* switching to msbuild

* made the graph size in cache testing bigger

* put commands into script files

* oooops
2018-12-22 00:39:29 -05:00
Lingfan Yu 0cbe521b99 [Doc] Fix document building for multiple tensor backends (#301)
* remove loading backend in sse

* build mxnet in a second run

* a third run to fix everything

* fix docstring in sampler

* fix docstring in transformer

* README for doc build

* some reordering and printing

* use filename_pattern instead of ignore_pattern to reduce warning at the cost of redundant work...

* add env var to use mxnet in Jenkinsfile

* remove step 3, it's already fixed by previous commit
2018-12-12 11:07:46 -05:00
Minjie Wang 2194b7dfa6 [Bugfix] edge order is not preserved when converting from edge list (#262) 2018-12-05 17:41:26 -05:00
VoVAllen cd907cddfa [Tutorial] Add sse tutorial & MXNet Tutorial CI (#252)
* add sse tutorial

* add mxnet tutorial ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix ci

* Fix ci

* Fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix CI

Fix CI image

* permission fix

* fix a bug in the code.

* small fix

* fix doc

* fix ci

* shorten the iters

* fix

* remove extra file

* add load_backend api to dynamically switch to another backend

* try fix

* fix tutorial

* fix tutorial

* fix bug in tutorial
2018-12-05 16:21:44 -05:00
Minjie Wang bcf8e1194b [Bugfix][CI] force download data everything (#208)
* poke ci

* poke again

* force download data everytime
2018-11-30 23:44:40 -05:00
Minjie Wang 2c2b747808 [Install] pip install (#180)
* add bdist_wheel build

* fix wheel build

* fix setup

* fix ci

* fix setup

* fix

* fix setup

* poke ci

* fix

* poke ci

* clean build

* fix ci

* addback the env
2018-11-27 00:47:01 -05:00
Minjie Wang a95459e3a2 [CI] Improved CI (#141)
* change ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* update ci

* nx package

* update ci

* update ci

* update ci

* fix

* mx dockerfile by zhengda

* python3.6->3.5

* update ci image

* add tutorial test

* fix ci

* fix ssl problem

* minor change

* small fix on traversal utest

* fix syntax

* add matplotlib in image

* fix

* update ci

* update ci
2018-11-12 01:06:05 -05:00
Minjie Wang 68ec624782 [API][Doc] API change & basic tutorials (#113)
* Add SH tutorials

* setup sphinx-gallery; work on graph tutorial

* draft dglgraph tutorial

* update readme to include document url

* rm obsolete file

* Draft the message passing tutorial

* Capsule code (#102)

* add capsule example

* clean code

* better naming

* better naming

* [GCN]tutorial scaffold

* fix capsule example code

* remove previous capsule example code

* graph struc edit

* modified:   2_graph.py

* update doc of capsule

* update capsule docs

* update capsule docs

* add msg passing prime

* GCN-GAT tutorial Section 1 and 2

* comment for API improvement

* section 3

* Tutorial API change (#115)

* change the API as discusses; toy example

* enable the new set/get syntax

* fixed pytorch utest

* fixed gcn example

* fixed gat example

* fixed mx utests

* fix mx utest

* delete apply edges; add utest for update_edges

* small change on toy example

* fix utest

* fix out in degrees bug

* update pagerank example and add it to CI

* add delitem for dataview

* make edges() return form that is compatible with send/update_edges etc

* fix index bug when the given data is one-int-tensor

* fix doc
2018-11-02 17:19:14 -04:00
Da Zheng 9e9a9488f1 [GraphIndex] Immutable graph index using MXNet CSRArray (#86)
* add immutable graph index.

* update ImmutableGraphIndex.

* add benchmarks of subgraph generation.

* fix node_subgraphs.

* use scipy synthetic data in immutable graph.

* create immutable_graph.

* use spmv in gcn.

* fix immutable graph index.

* update graph index.

* create ImmutableSubgraphIndex.

* return subgraph node and edge mapping.

* fix benchmark.

* add mapping to subgraph nid.

* test in_edges and out_edges.

* update benchmark.

* Fix immutable subgraph.

* complete in_edges and out_edges.

* fix benchmarks.

* add test on node_subgraphs

* add sse.

* construct subgraphs in parallel.

* add in/out degree(s).

* make immutable graph index backend-specific.

* implement has_edge(s) and edge_id(s).

* Revert "use spmv in gcn."

This reverts commit 9cfed5f5fb3dd2ed9b98745348b1c0e9731ed7f7.

* implement node_subgraphs in GraphIndex.

* fix sse.

* address comments.

* address comments.

* Update mxnet docker.
2018-10-26 11:28:25 -07:00
Da Zheng 0d6cd30be3 [CI] Enable mxnet CI. (#105)
* fix tests.

* enable mxnet CI.

* add mxnet tests.

* update jenkins.

* update mxnet docker image.
2018-10-26 12:04:41 -04:00
Lingfan Yu dce1f44d46 CI lint check (#93)
* CI for lint check

* init submodule before run lint

* install ubuntu core for lint docker

* remove generator import in dgl
2018-10-18 23:50:24 -04:00
Lingfan Yu 49ea781cc3 Improve CI (#92)
* gcn example test code

* GPU test

* use python3

* use functions

* gpu test use functions

* remove root

* use one script to run both cpu and gpu tests
2018-10-18 22:42:25 -04:00
Gan Quan bc3f852dab [GRAPHINDEX] Multigraph support (#79)
* multigraph support on graph index

* more tests

* multigraph flag, bugfix on clear & copy

* networkx interfaces

* including graph index tests in Jenkins

* node subgraph test

* edge subgraphs

* removing duplicates in pred/succ

* more explicit test and doc

* query source and destination from edge id

* subgraphindex

* renaming has_edge to has_edge_between, apply_edges adding eid

* send_on and send_and_recv_on

* DGLGraph edge subgraph

* merged send_on and send_and_recv_on

* change request

* removing hashmap

* creating multigraph by flag; mingw support

* changes per request

* reverting networkx auto multigraph discovery

* notes on send/send_and_recv on multigraphs

* changing test reducer from sum to max

* added a fixme note in spmv scheduler
2018-10-17 21:46:10 -04:00
Lingfan Yu 750e50372a Efficient send_and_recv (#83)
* python side send_and_recv shortcut

* common util function for c apis

* degree bucketing scheduler

* scheduler c apis

* cmake

* python side logics

* minor

* fix multiple msg/red func cases

* remove shell echo command in Jenkinsfile...

* fuse apply for send_and_recv

* fuse update func for update_all

* typo...

* handle anonymous

* add degree bucketing for entire graph

* degree bucketing executor

* minor

* style

* rename graph_mapping to recv_nodes

* fix some comments
2018-10-17 11:14:52 -04:00
Lingfan Yu cdf7334cc6 Dockerfile and CI (#74)
* Test CPP branch CI (#2)

* Fix batching node-only graphs (#62)

* fixing batching with graphs with no edges

* oops forgot test

* fix readme

* Docker and Jenkins (#1)

* docker ci cpu

* install python packages

* docker ci gpu

* add readme

* use dgl cpu image

* run command in container as root

* use python3

* fix test case

* remove nose from docker file

* docker folder readme

* parallelize cpu and gpu

* top level stages

* comment out python2 related installation

* fix

* remove igraph

* building for cpp

* change building order

* export env in test stage

* withEnv

* run docker container as root

* fix test cases

* fix test cases

* minor

* remove old build
2018-10-07 19:18:43 -04:00
Minjie Wang 11e42d1094 Batching semantics and naive frame storage (#31)
* batch message_func, reduce_func and update_func

Conflicts:
	python/dgl/backend/pytorch.py

* test cases for batching

Conflicts:
	python/dgl/graph.py

* resolve conflicts

* setter/getter

Conflicts:
	python/dgl/graph.py

* test setter/getter

Conflicts:
	python/dgl/graph.py

* merge DGLGraph and DGLBGraph

Conflicts:
	python/dgl/graph.py

Conflicts:
	python/dgl/graph.py

* batchability test

Conflicts:
	python/dgl/graph.py

Conflicts:
	python/dgl/graph.py

* New interface (draft)

Conflicts:
	_reference/gat_mx.py
	_reference/molecular-gcn.py
	_reference/molecular-gcn_mx.py
	_reference/multi-gcn.py
	_reference/multi-gcn_mx.py
	_reference/mx.py
	python/dgl/graph.py

* Batch operations on graph

Conflicts:
	.gitignore
	python/dgl/backend/__init__.py
	python/dgl/backend/numpy.py
	python/dgl/graph.py

* sendto

* storage

* NodeDict

* DGLFrame/DGLArray

* scaffold code for graph.py

* clean up files; initial frame code

* basic frame tests using pytorch

* frame autograd test passed

* fix non-batched tests

* initial code for cached graph; tested

* batch sendto

* batch recv

* update routines

* update all

* anonymous repr batching

* specialize test

* igraph dep

* fix

* fix

* fix

* fix

* fix

* clean some files

* batch setter and getter

* fix utests
2018-07-30 14:10:37 -04:00
Minjie Wang beaeb8a827 Setup Jenkins (#30)
* jenkins init

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* fix

* test succ (#1)

* test succ

* test fail

* fix fail

* fix jenkins

* icon

* icon

* icon
2018-07-22 18:38:37 -04:00