* Added code for Rectifying (TypeError: unhashable type: 'slice') when copying file
* 1) added distributed preprocessing code to create ParMetis Input from CSV files
2) add code to run pm_dglpart on multiple machines
3) added support for recreating heteregenous graph from homo geneous graph based on dropped edges, as ParMetis currently only supports homogeneous graphs
* move to pandas
* Added comments and remove drop_duplicates as it was redundant
* Addressed Pr Comments
* Rename variable
* Added comment
* Added comment
* updated ReadMe
Co-authored-by: Ankit Garg <gaank@amazon.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
* rename get_data_size.
* remove g from DistTensor.
* remove g from DistEmbedding.
* clean up API of graph partition book.
* fix DistGraph
* fix lint.
* collect all part policies.
* fix.
* fix.
* support distributed sampler.
* remove partition.py
* temp fix omp.
* set server threads.
* add CAPI to set up OMP threads.
* fix.
* fix.
* update namesapce.
* set cpi properly.
* allow to config num worker threads.
* set #threads.
* fix.
* initial version from distributed training.
This is copied from multiprocessing training.
* modify for distributed training.
* it's runnable now.
* measure time in neighbor sampling.
* simplify neighbor sampling.
* fix a bug in distributed neighbor sampling.
* allow single-machine training.
* fix a bug.
* fix a bug.
* fix openmp.
* make some improvement.
* fix.
* add prepare in the sampler.
* prepare nodeflow async.
* fix a bug.
* get id.
* simplify the code.
* improve.
* fix partition.py
* fix the example.
* add more features.
* fix the example.
* allow one partition
* use distributed kvstore.
* do g2l map manually.
* fix commandline.
* a temp script to save reddit.
* fix pull_handler.
* add pytorch version.
* estimate the time for copying data.
* delete unused code.
* fix a bug.
* print id.
* fix a bug
* fix a bug
* fix a bug.
* remove redundent code.
* revert modify in sampler.
* fix temp script.
* remove pytorch version.
* fix.
* distributed training with pytorch.
* add distributed graph store.
* fix.
* add metis_partition_assignment.
* fix a few bugs in distributed graph store.
* fix test.
* fix bugs in distributed graph store.
* fix tests.
* remove code of defining DistGraphStore.
* fix partition.
* fix example.
* update run.sh.
* only read necessary node data.
* batching data fetch of multiple NodeFlows.
* simplify gcn.
* remove unnecessary code.
* use the new copy_from_kvstore.
* update training script.
* print time in graphsage.
* make distributed training runnable.
* use val_nid.
* fix train_sampling.
* add distributed training.
* add run.sh
* add more timing.
* fix a bug.
* save graph metadata when partition.
* create ndata and edata in distributed graph store.
* add timing in minibatch training of GraphSage.
* use pytorch distributed.
* add checks.
* fix a bug in global vs. local ids.
* remove fast pull
* fix a compile error.
* update and add new APIs.
* implement more methods in DistGraphStore.
* update more APIs.
* rename it to DistGraph.
* rename to DistTensor
* remove some unnecessary API.
* remove unnecessary files.
* revert changes in sampler.
* Revert "simplify gcn."
This reverts commit 0ed3a34ca714203a5b45240af71555d4227ce452.
* Revert "simplify neighbor sampling."
This reverts commit 551c72d20f05a029360ba97f312c7a7a578aacec.
* Revert "measure time in neighbor sampling."
This reverts commit 63ae80c7b402bb626e24acbbc8fdfe9fffd0bc64.
* Revert "add timing in minibatch training of GraphSage."
This reverts commit e59dc8957a414c7df5c316f51d78bce822bdef5e.
* Revert "fix train_sampling."
This reverts commit ea6aea9a4aabb8ba0ff63070aa51e7ca81536ad9.
* fix lint.
* add comments and small update.
* add more comments.
* add more unit tests and fix bugs.
* check the existence of shared-mem graph index.
* use new partitioned graph storage.
* fix bugs.
* print error in fast pull.
* fix lint
* fix a compile error.
* save absolute path after partitioning.
* small fixes in the example
* Revert "[kvstore] support any data type for init_data() (#1465)"
This reverts commit 87b6997bf2.
* fix a bug.
* disable evaluation.
* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""
This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.
* support set and init data.
* support set and init data.
* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""
This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.
* fix bugs.
* fix unit test.
* move to dgl.distributed.
* fix lint.
* fix lint.
* remove local_nids.
* fix lint.
* fix test.
* remove train_dist.
* revert train_sampling.
* rename funcs.
* address comments.
* address comments.
Use NodeDataView/EdgeDataView to keep track of data.
* address comments.
* address comments.
* revert.
* save data with DGL serializer.
* use the right way of getting shape.
* fix lint.
* address comments.
* address comments.
* fix an error in mxnet.
* address comments.
* add edge_map.
* add more test and fix bugs.
Co-authored-by: Zheng <dzzhen@186590dc80ff.ant.amazon.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-6-131.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-250.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-135.us-west-2.compute.internal>
* add metis.
* add test.
* construct partition id.
* link to METIS github repo.
* update metis.
* add a tool for partitioning a graph.
* update metis.
* update.
* update.
* fix metis.
* fix lint
* fix indent.
* another way of building metis.
* disable metis in windows.
* test windows
* fix.
* disable metis for windows properly.
* fix for tensorflow.
* skip test for gpu.
* make graph symmetric
* address comments.
* more comments.
* fix compile
* fix a bug.
* add test.
* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
Rhett Ying